1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tctcttgataatccccatatattttttttatggggatacctgtattatctatctggtttgtcacctgactggtcctttccctcgttggcacttcgatcagGAAACTTTTGATTCATCAAAACCGGTCACATCTGAAGATATACGAGCTGTTTTTGAGAATCTTGCTAAGAAGAAAAAACAGAGGTTGTCATGAAACTCAG
species | Oryza sativa |
transcript | LOC_Os06g33810.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AGATTTTGAGTGGCATCAATGACATGAAGAATGAGCTTCAGTCTTTTCTG GAAACTTTTGATTCATCAAAACCGGTCACATCTGAAGATATACGAGCTGTTEST: gi|88955992|gb|CI092280.1|CI092280
genomic: AGATTTTGAGTGGCATCAATGACATGAAGAATGAGCTTCAGTCTTTTCTGgtaaagttat ... cttcgatcagGAAACTTTTGATTCATCAAAACCGGTCACATCTGAAGATATACGAGCTGTT
EST: AGATTTTGAGTGGCATCAATGACATGAAGAATGAGCTTCAGTCTTTTCTG GAAACTTTTGATTCATCAAAACCGGTCACATCTGAAGATATACGAGCTGTTEST: gi|88968895|gb|CI098966.1|CI098966
genomic: AGATTTTGAGTGGCATCAATGACATGAAGAATGAGCTTCAGTCTTTTCTGgtaaagttat ... cttcgatcagGAAACTTTTGATTCATCAAAACCGGTCACATCTGAAGATATACGAGCTGTT
EST: AGATTTTGAGTGGCATCAATGACATGAAGAATGAGCTTCAGTCTTTTCTG GAAACTTTTGATTCATCAAAACCGGTCACATCTGAAGATATACGAGCTGTTEST: gi|86426445|gb|CI071542.1|CI071542
genomic: AGATTTTGAGTGGCATCAATGACATGAAGAATGAGCTTCAGTCTTTTCTGgtaaagttat ... cttcgatcagGAAACTTTTGATTCATCAAAACCGGTCACATCTGAAGATATACGAGCTGTT
EST: AGATTTTGAGTGGCATCAATGACATGAAGAATGAGCTTCAGTCTTTTCTG GAAACTTTTGATTCATCAAAACCGGTCACATCTGAAGATATACGAGCTGTTEST: gi|286325|gb|D15133.1|D15133
genomic: AGATTTTGAGTGGCATCAATGACATGAAGAATGAGCTTCAGTCTTTTCTGgtaaagttat ... cttcgatcagGAAACTTTTGATTCATCAAAACCGGTCACATCTGAAGATATACGAGCTGTT
EST: AGATTTTGAGTGGCATCAATGACATGAAGAATGAGCTTCAGTCTTTTCTG GAAACTTTTGATTCATCAAAACCGGTCACATCTGAAGATATACGAGCTGTTEST: gi|87006773|gb|CI285807.1|CI285807
genomic: AGATTTTGAGTGGCATCAATGACATGAAGAATGAGCTTCAGTCTTTTCTGgtaaagttat ... cttcgatcagGAAACTTTTGATTCATCAAAACCGGTCACATCTGAAGATATACGAGCTGTT
EST: AGATTTTGAGTGGCATCAATGACATGAAGAATGAGCTTCAGTCTTTTCTG GAAACTTTTGATTCATCAAAACCGGTCACATCTGAAGATATACGAGCTGTTEST: gi|87025988|gb|CI257146.1|CI257146
genomic: AGATTTTGAGTGGCATCAATGACATGAAGAATGAGCTTCAGTCTTTTCTGgtaaagttat ... cttcgatcagGAAACTTTTGATTCATCAAAACCGGTCACATCTGAAGATATACGAGCTGTT
EST: AGATTTTGAGTGGCATCAATGACATGAAGAATGAGCTTCAGTCTTTTCTG GAAACTTTTGATTCATCAAAACCGGTCACATCTGAAGATATACGAGCTGTTEST: gi|86527368|gb|CI167574.1|CI167574
genomic: AGATTTTGAGTGGCATCAATGACATGAAGAATGAGCTTCAGTCTTTTCTGgtaaagttat ... cttcgatcagGAAACTTTTGATTCATCAAAACCGGTCACATCTGAAGATATACGAGCTGTT
EST: AGATTTTGAGTGGCATCAATGACATGAAGAATGAGCTTCAGTCTTTTCTG GAAACTTTTGATTCATCAAAACCGGTCACATCTGAAGATATACGAGCTGTTEST: gi|163920947|gb|EG714057.1|EG714057
genomic: AGATTTTGAGTGGCATCAATGACATGAAGAATGAGCTTCAGTCTTTTCTGgtaaagttat ... cttcgatcagGAAACTTTTGATTCATCAAAACCGGTCACATCTGAAGATATACGAGCTGTT
EST: AGATTTTGAGTGGCATCAATGACATGAAGAATGAGCTTCAGTCTTTTCTG GAAACTTTTGATTCATCAAAACCGGTCGCATCTGAAGATATACGAGCTGTTEST: gi|86484160|gb|CI126793.1|CI126793
genomic: AGATTTTGAGTGGCATCAATGACATGAAGAATGAGCTTCAGTCTTTTCTGgtaaagttat ... cttcgatcagGAAACTTTTGATTCATCAAAACCGGTCACATCTGAAGATATACGAGCTGTT
EST: AGATTTTGAGTGGCATCAATGACATGAAGAATGAGCTTCAGTCTTTTCTG GAAACTTTTGATTCATCAAAACCGGTCACATCTGAAGATATACGAGCTGTTEST: gi|86484244|gb|CI126877.1|CI126877
genomic: AGATTTTGAGTGGCATCAATGACATGAAGAATGAGCTTCAGTCTTTTCTGgtaaagttat ... cttcgatcagGAAACTTTTGATTCATCAAAACCGGTCACATCTGAAGATATACGAGCTGTT
EST: AGATTTTGAGTGGCATCAATGACATGAAGAATGAGCTTCAGTCTTTTCTG GAAACTTTTGATTCATCAAAACCGGTCACATCTGAAGATATACGAGCTGTTEST: gi|86836293|gb|CI348245.1|CI348245
genomic: AGATTTTGAGTGGCATCAATGACATGAAGAATGAGCTTCAGTCTTTTCTGgtaaagttat ... cttcgatcagGAAACTTTTGATTCATCAAAACCGGTCACATCTGAAGATATACGAGCTGTT
EST: ATGACATGAAGAATGAGCTTCAGTCTTTTCTG G-AACTTTTGATTCATCAAAACCGGTCACATCTGAAGATATACGAGCTGTTEST: gi|87028959|gb|CI351262.1|CI351262
genomic: ATGACATGAAGAATGAGCTTCAGTCTTTTCTGgtaaagttat ... cttcgatcagGAAACTTTTGATTCATCAAAACCGGTCACATCTGAAGATATACGAGCTGTT
EST: ATCAATGACATGAAGAATGAGCTTCAGTCTTTTCTG GAAAC-TTTGATTCATCAAAACCGGTCACATCTGAAGATATACGAGCTGTTEST: gi|88256998|gb|CI359386.1|CI359386
genomic: ATCAATGACATGAAGAATGAGCTTCAGTCTTTTCTGgtaaagttat ... cttcgatcagGAAACTTTTGATTCATCAAAACCGGTCACATCTGAAGATATACGAGCTGTT
EST: AGATTTTGAGTGGCATCAATGACATGAAGAATGAGCTTCAGTCTTTTCTG GAAACTTTTGATTCATCAAAACCGGTCACATCTGAAGATATACGAGGCTGTEST: gi|29687764|gb|CB684039.1|CB684039
genomic: AGATTTTGAGTGGCATCAATGACATGAAGAATGAGCTTCAGTCTTTTCTGgtaaagttat ... cttcgatcagGAAACTTTTGATTCATCAAAACCGGTCACATCTGAAGATATACGA-GCTGT
EST: AGATTTTGAGTGGCATCAATGACATGAAGAATGAGCTTCAGTCTTTTCTG GAAACTTTTGATTCATCAAAACCGGTCACATCTGAAGATATACGAGCTGTT
genomic: AGATTTTGAGTGGCATCAATGACATGAAGAATGAGCTTCAGTCTTTTCTGgtaaagttat ... cttcgatcagGAAACTTTTGATTCATCAAAACCGGTCACATCTGAAGATATACGAGCTGTT
tatctatctggtttgtcacctgactggtcctttccctcgttggcacttcgatcagGAAACTTTTGATTCATCAAAACCGGTCACATCTGAAGATATACGAGCTGTTTTTGAGAATCTTGCTAAGAAGAAAAAACAGAGGTTGTCATGAAACTCAG
acctgac putative branch site (score: 34)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctcttgataatccccatatattttttttatggggatacctgtattatctatctggtttgtcacctgactggtcctttccctcgttggcacttcgatcagGAAACTTTTGATTCATCAAAACCGGTCACATCTGAAGATATACGAGCTGTTTTTGAGAATCTTGCTAAGAAGAAAAAACAGAGGTTGTCATGAAACTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - -acctgta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgactgg