1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ctaaaccacaccaaatcgatgacttgatgttcctcataatgacatggtattgggtgattagccactaatgatatctctctcctgtgatttgattttgcagGAGGTCCTGATGGGGAAGGACGAGTATTTCCAGTCGTTCCGCGTGAACGCCGACAACTTCATCTGCACCCTCCTCCCCGGCATCTCTAATCATCCCCAGA
species | Oryza sativa |
transcript | LOC_Os06g14540.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AACGTCCTCATCTCCAAG GAGGTCCTGATGGGGAAGGACGAGTATTTCCAGTCGTTCCGCGTGAACGCCEST: gi|58656381|gb|CK045061.1|CK045061
genomic: AACGTCCTCATCTCCAAGgtagtactag ... gattttgcagGAGGTCCTGATGGGGAAGGACGAGTATTTCCAGTCGTTCCGCGTGAACGCC
EST: AGTTCGGCTGGGACAACAAGCACGCCGGCATCAACGTCCTCATCTCCAAG GAGGTCCTGATGGGGAAGGACGAGTATTTCCAGTCGTTCCGCGTGAACGCCEST: gi|58654514|gb|CK043194.1|CK043194
genomic: AGTTCGGCTGGGACAACAAGCACGCCGGCATCAACGTCCTCATCTCCAAGgtagtactag ... gattttgcagGAGGTCCTGATGGGGAAGGACGAGTATTTCCAGTCGTTCCGCGTGAACGCC
EST: AGTTCGGCTGGGACAACAAGCACGCCGGCATCAACGTCCTCATCTCCAAG GAGGTCCTGATGGGGAAGGACGAGTATTTCCAGTCGTTCCGCGTGAACGCCEST: gi|58672435|gb|CK061121.1|CK061121
genomic: AGTTCGGCTGGGACAACAAGCACGCCGGCATCAACGTCCTCATCTCCAAGgtagtactag ... gattttgcagGAGGTCCTGATGGGGAAGGACGAGTATTTCCAGTCGTTCCGCGTGAACGCC
EST: AGTTCGGCTGGGACAACAAGCACGCCGGCATCAACGTCCTCATCTCCAAG GAGGTCCTGATGGGGAAGGACGAGTATTTCCAGTCGTTCCGCGTGAACGCCEST: gi|58685941|gb|CK074628.1|CK074628
genomic: AGTTCGGCTGGGACAACAAGCACGCCGGCATCAACGTCCTCATCTCCAAGgtagtactag ... gattttgcagGAGGTCCTGATGGGGAAGGACGAGTATTTCCAGTCGTTCCGCGTGAACGCC
EST: AAGCACGCCGGCATCAACGTCCTCATCTCCAAG GAGGTCCTGATGGGGAAGGACGAGTATTTCCAGTCGTTCCGCGTGAACGCC
genomic: AAGCACGCCGGCATCAACGTCCTCATCTCCAAGgtagtactag ... gattttgcagGAGGTCCTGATGGGGAAGGACGAGTATTTCCAGTCGTTCCGCGTGAACGCC
ggtattgggtgattagccactaatgatatctctctcctgtgatttgattttgcagGAGGTCCTGATGGGGAAGGACGAGTATTTCCAGTCGTTCCGCGTGAACGCCGACAACTTCATCTGCACCCTCCTCCCCGGCATCTCTAATCATCCCCAGA
atttgatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctaaaccacaccaaatcgatgacttgatgttcctcataatgacatggtattgggtgattagccactaatgatatctctctcctgtgatttgattttgcagGAGGTCCTGATGGGGAAGGACGAGTATTTCCAGTCGTTCCGCGTGAACGCCGACAACTTCATCTGCACCCTCCTCCCCGGCATCTCTAATCATCCCCAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - caccaaa
- - - - - - - - - - - cttgatg
- - - - - - - - - - - - - - - - - - - -tgacatg