1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...accagtcacttttcacttccaatttttgtggcatattactaaatactaaggatgatggtttttcggacattttatcctaactgaagtatttgaatcgcagACTATCTTTTCAATGGATTCATTTGTCAAGACTATAGCTCTGCAAGAGGATGTCATTGCTGGATGGCGCCCAAAGGTCATGGGTTAAATTGTAGCTGTAA
species | Oryza sativa |
transcript | LOC_Os06g12630.3 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TGTGAAAAAATATATGAAG ACTATCTTTTCAATGGATTCATTTGTCAAGACTATAGCTCTGCAAGAGGATEST: gi|86533872|gb|CI174078.1|CI174078
genomic: TGTGAAAAAATATATGAAGgtatactgtt ... tgaatcgcagACTATCTTTTCAATGGATTCATTTGTCAAGACTATAGCTCTGCAAGAGGAT
EST: AGAATTGGTCTGTTCCAGATTCACTCTCACATGTGAAAAAATATATGAAG ACTATCTTTTCAATGGATTCATTTGTCAAGACTATAGCTCTGCAAGAGGATEST: gi|88985497|gb|CI003000.1|CI003000
genomic: AGAATTGGTCTGTTCCAGATTCACTTTCACATGTGAAAAAATATATGAAGgtatactgtt ... tgaatcgcagACTATCTTTTCAATGGATTCATTTGTCAAGACTATAGCTCTGCAAGAGGAT
EST: AGAATTGGTCTGTTCCAGATTCACTTTCACATGTGAAAAAATATATGAAG ACTATCTTTTCAATGGATTCATTTGTCAAGACTATAGCTCTGCAAGAGGATEST: gi|5005315|gb|AU070477.1|AU070477
genomic: AGAATTGGTCTGTTCCAGATTCACTTTCACATGTGAAAAAATATATGAAGgtatactgtt ... tgaatcgcagACTATCTTTTCAATGGATTCATTTGTCAAGACTATAGCTCTGCAAGAGGAT
EST: AGAATTGGTCTGTTCCAGATTCACTTTCACATGTGAAAAAATATATGAAG ACTATCTTTTCAATGGATTCATTTGTCAAGACTATAGCTCTGCAAGAGGATEST: gi|88250367|gb|CI348597.1|CI348597
genomic: AGAATTGGTCTGTTCCAGATTCACTTTCACATGTGAAAAAATATATGAAGgtatactgtt ... tgaatcgcagACTATCTTTTCAATGGATTCATTTGTCAAGACTATAGCTCTGCAAGAGGAT
EST: AGAATTGGTCTGTTCCAGATTCACTTTCACATGTGAAAAAATATATGAAG ACTATCTTTTCAATGGATTCATTTGTCAAGACTATAGCTCTGCAAGAGGATEST: gi|86494994|gb|CI137627.1|CI137627
genomic: AGAATTGGTCTGTTCCAGATTCACTTTCACATGTGAAAAAATATATGAAGgtatactgtt ... tgaatcgcagACTATCTTTTCAATGGATTCATTTGTCAAGACTATAGCTCTGCAAGAGGAT
EST: TCCAGATTCACTTTCACATGTGAAAAAATATATGAAG ACTATCTTTTCAATGGATTCATTTGTCAAGACTATAGCTCTGCAAGAGGATEST: gi|86413068|gb|CI067473.1|CI067473
genomic: TCCAGATTCACTTTCACATGTGAAAAAATATATGAAGgtatactgtt ... tgaatcgcagACTATCTTTTCAATGGATTCATTTGTCAAGACTATAGCTCTGCAAGAGGAT
EST: AGAATTGGTCTGTTCCAGATTCACTTTCACATGTGAAAAAATATATGAAG ACTATCTTTTCAATGGATTCATTTGTCAAGACTATAGCTCTGCAAGAGGATEST: gi|86826938|gb|CI268819.1|CI268819
genomic: AGAATTGGTCTGTTCCAGATTCACTTTCACATGTGAAAAAATATATGAAGgtatactgtt ... tgaatcgcagACTATCTTTTCAATGGATTCATTTGTCAAGACTATAGCTCTGCAAGAGGAT
EST: AGAATTGGTCTGTTCCAGATTCACTTTCACATGTGAAAAAATATATGAAG ACTATCTTTTCAATGGATTCATTTGTCAAGACTATAGCTCTGCAAGAGGAT
genomic: AGAATTGGTCTGTTCCAGATTCACTTTCACATGTGAAAAAATATATGAAGgtatactgtt ... tgaatcgcagACTATCTTTTCAATGGATTCATTTGTCAAGACTATAGCTCTGCAAGAGGAT
ctaaggatgatggtttttcggacattttatcctaactgaagtatttgaatcgcagACTATCTTTTCAATGGATTCATTTGTCAAGACTATAGCTCTGCAAGAGGATGTCATTGCTGGATGGCGCCCAAAGGTCATGGGTTAAATTGTAGCTGTAA
tcctaac putative branch site (score: 1)
acattttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| accagtcacttttcacttccaatttttgtggcatattactaaatactaaggatgatggtttttcggacattttatcctaactgaagtatttgaatcgcagACTATCTTTTCAATGGATTCATTTGTCAAGACTATAGCTCTGCAAGAGGATGTCATTGCTGGATGGCGCCCAAAGGTCATGGGTTAAATTGTAGCTGTAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA