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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ggagcagtgtctttctgttcctgcttgctactcactccgtacacaaacttcaaattcgtgctctgttgttcacctacattgcccttcaaatcttgttcagGCATGCAAATTGAAGTTGGGAGATTTGAAGGGTGCTCTGTTGGATGCTGATTTTGCACTGCGTGAAAGTGAGGGCAATGCTAAGGCATTTTTTCGACAAG

Basic information

species Oryza sativa
transcript LOC_Os06g11320.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os06g11320.1 (Oryza sativa), 3'ss of exon 4
lower sequence: GRMZM2G329306_T01 (Zea mays), 3'ss of exon 4
ggagcagtgtctttct-gttcctgcttgctactcactccgtacaca-aacttcaaattcgtgctctgttgttcacctacattgcccttcaaat--cttgttcagGCATGCAAATTGAAGTTGGGAGATTTGAAGGGTGCTCTGTTGGATGCTGATTTTGCACTGCGTGAAAGTGAGGGCAATGCTAAGGCATTTTTTCGACAAG
    |||||  ||||| | |   |        ||  ||  |  | | ||    |     | | ||| |   || ||  |   |   || | ||  ||| |||||||||||||||| ||||| |||||||  |  || ||| | || || || |||||||||||||||||||| ||||| |||||||| || ||||| |||||||
----cagtgattttctcggttgggaccatgtttcggtctcttaatataatactaggagggcggtctttccctccccagctgagttttttacatgactttttcagGCATGCAAATTAAAGTTAGGAGATTCAAGTGGGGCTTTATTAGACGCAGATTTTGCACTGCGTGAAAGGGAGGGAAATGCTAAAGCTTTTTTCCGACAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86496111|gb|CI138744.1|CI138744
EST:     AGAGCTCAGCACTGCGGAAGACCAAATCGATTATACTCACAAATAGCTCT                         GCATGCAAATTGAAGTTGGGAGATTTGAAGGGTGCTCTGTTGGATGCTGAT
genomic: AGAGCTCAGCACTGCGGAAGACCAAATCGATTATACTCACAAATAGCTCTgtaagttgca ... tcttgttcagGCATGCAAATTGAAGTTGGGAGATTTGAAGGGTGCTCTGTTGGATGCTGAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aacttcaaattcgtgctctgttgttcacctacattgcccttcaaatcttgttcagGCATGCAAATTGAAGTTGGGAGATTTGAAGGGTGCTCTGTTGGATGCTGATTTTGCACTGCGTGAAAGTGAGGGCAATGCTAAGGCATTTTTTCGACAAG
                                             tcttgttc  CT-rich tract
                                       ttcaaat  TA-rich tract