1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
gtaagcttcttttgaactatacctgttacactaactttttattgaaacttctcaacctttttgtttttgctcagAACCAACTGTGCTGGTCAGTGGCAACGATTTTTATGCTTTTCCACGCATTGATCCAATTAAAAGGCGTATGGCATGGATTGAATGGAGTAACCCAAACAT
species | Oryza sativa |
transcript | LOC_Os06g11190.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TCCCGTGACAACAATTGCTGCTGTAACAATAAGTGACAGAGATGCTAATG AACCAACTGTGCTGGTCAGTGGCAACGATTTTTATGCTTTTCCACGCATTGEST: gi|58689907|gb|CK078594.1|CK078594
genomic: TCCCGTGACAACAATTGCTGCTGTAACAATAAGTGACAGAGATGCTAATGgtaagcttct ... ttttgctcagAACCAACTGTGCTGGTCAGTGGCAACGATTTTTATGCTTTTCCACGCATTG
EST: TCCCGTGACAACAATTGCTGCTGTAACAATAAGTGAAAGAGATGCTAATG AACCAACTGTGCTGGTCAGTGGCAACGATTTTTATGCTTTTCCACGCATTGEST: gi|29629332|gb|CB634343.1|CB634343
genomic: TCCCGTGACAACAATTGCTGCTGTAACAATAAGTGACAGAGATGCTAATGgtaagcttct ... ttttgctcagAACCAACTGTGCTGGTCAGTGGCAACGATTTTTATGCTTTTCCACGCATTG
EST: TCCCGTGACAACAATTGCTGCTGTAACAATAAGTGACAGAGATGCTAATG AACCAACTGTGCTGGTCAGTGGCAACGATTTTTATGCTTTTCCACGCATTG
genomic: TCCCGTGACAACAATTGCTGCTGTAACAATAAGTGACAGAGATGCTAATGgtaagcttct ... ttttgctcagAACCAACTGTGCTGGTCAGTGGCAACGATTTTTATGCTTTTCCACGCATTG
tacctgttacactaactttttattgaaacttctcaacctttttgtttttgctcagAACCAACTGTGCTGGTCAGTGGCAACGATTTTTATGCTTTTCCACGCATTGATCCAATTAAAAGGCGTATGGCATGGATTGAATGGAGTAACCCAAACAT
cactaac putative branch site (score: 5)
cttctcaacctttttg putative PPT
taactttttattgaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagcttcttttgaactatacctgttacactaactttttattgaaacttctcaacctttttgtttttgctcagAACCAACTGTGCTGGTCAGTGGCAACGATTTTTATGCTTTTCCACGCATTGATCCAATTAAAAGGCGTATGGCATGGATTGAATGGAGTAACCCAAACAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA