1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtgagtttattacttattacaatgctctggtattaatgcattgtggtgctttgcttttgaagttttgttgatgagcaactgattacagttatgtatttctgtagGCTGTTAAGAAGCTTGGTCTCTGGGGTCTATTCACTCGTGGACTGCCCCTACGTATTGTCATGATCGGTACCCTTACTGGAGCTCAATGGGGAATTTATG
species | Oryza sativa |
transcript | LOC_Os06g10810.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ATAATCTAGTCTCTTTCCTGAACAATGCCAAGGGTGCTACAGTGGGTGAT GCTGTTAAGAAGCTTGGTCTCTGGGGTCTATTCACTCGTGGACTGCCCCTAEST: gi|86484593|gb|CI127226.1|CI127226
genomic: ATAATCTAGTCTCTTTCCTGAACAATGCCAAGGGTGCTACAGTGGGTGATgtgagtttat ... atttctgtagGCTGTTAAGAAGCTTGGTCTCTGGGGTCTATTCACTCGTGGACTGCCCCTA
EST: ATAATCTAGTCTCTTTCCTGAACAATGCCAAGGGTGCTACAGTGGGTGAT GCTGTTAAGAAGCTTGGTCTCTGGGGTCTATTCACTCGTGGACTGCCCCTAEST: gi|3763475|gb|AU030227.1|AU030227
genomic: ATAATCTAGTCTCTTTCCTGAACAATGCCAAGGGTGCTACAGTGGGTGATgtgagtttat ... atttctgtagGCTGTTAAGAAGCTTGGTCTCTGGGGTCTATTCACTCGTGGACTGCCCCTA
EST: ATAATCTAGTCTCTTTCCTGAACAATGCCAAGGGTGCTACAGTGGGTGAT GCTGTTAAGAAGCTTGGTCTCTGGGGTCTATTCACTCGTGGACTGCCCCTAEST: gi|29683990|gb|CB680265.1|CB680265
genomic: ATAATCTAGTCTCTTTCCTGAACAATGCCAAGGGTGCTACAGTGGGTGATgtgagtttat ... atttctgtagGCTGTTAAGAAGCTTGGTCTCTGGGGTCTATTCACTCGTGGACTGCCCCTA
EST: ATAATCTAGTCTCTTTCCTGAACAATGCCAAGGGTGCTACAGTGGGTGAT GCTGTTAAGAAGCTTGGTCTCTGGGGTCTATTCACTCGTGGACTGCCCCTAEST: gi|86828357|gb|CI276915.1|CI276915
genomic: ATAATCTAGTCTCTTTCCTGAACAATGCCAAGGGTGCTACAGTGGGTGATgtgagtttat ... atttctgtagGCTGTTAAGAAGCTTGGTCTCTGGGGTCTATTCACTCGTGGACTGCCCCTA
EST: ATAATCTAGTCTCTTTCCTGAACAATGCCAAGGGTGCTACAGTGGGTGAT GCTGTTAAGAAGCTTGGTCTCTGGGGTCTATTCACTCGTGGACTGCCCCTAEST: gi|86501353|gb|CI143986.1|CI143986
genomic: ATAATCTAGTCTCTTTCCTGAACAATGCCAAGGGTGCTACAGTGGGTGATgtgagtttat ... atttctgtagGCTGTTAAGAAGCTTGGTCTCTGGGGTCTATTCACTCGTGGACTGCCCCTA
EST: ATAATCTAGTCTCTTTCCTGAACAATGCCAAGGGTGCTACAGTGGGTGAT GCTGTTAAGAAGCTTGGTCTCTGGGGTCTATTCACTCGTGGACTGCCCCTA
genomic: ATAATCTAGTCTCTTTCCTGAACAATGCCAAGGGTGCTACAGTGGGTGATgtgagtttat ... atttctgtagGCTGTTAAGAAGCTTGGTCTCTGGGGTCTATTCACTCGTGGACTGCCCCTA
tttgcttttgaagttttgttgatgagcaactgattacagttatgtatttctgtagGCTGTTAAGAAGCTTGGTCTCTGGGGTCTATTCACTCGTGGACTGCCCCTACGTATTGTCATGATCGGTACCCTTACTGGAGCTCAATGGGGAATTTATG
aactgat putative branch site (score: 25)
tatttct putative PPT
ttatgtattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtttattacttattacaatgctctggtattaatgcattgtggtgctttgcttttgaagttttgttgatgagcaactgattacagttatgtatttctgtagGCTGTTAAGAAGCTTGGTCTCTGGGGTCTATTCACTCGTGGACTGCCCCTACGTATTGTCATGATCGGTACCCTTACTGGAGCTCAATGGGGAATTTATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA