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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttcaatttcaagctttaccactaaacagcaattcccacatccgcagctcactatccactcaattctaactgtactgatgaatcaattttcatattgcagGAGCAAAATATCCGGAATATACCTCTCCCTACATTCACATCTGGTAGTCATTTGGCAGTTACTGATGCACAAGGGCCACCACTTCCTTCAAAG

Basic information

species Oryza sativa
transcript LOC_Os06g09370.2
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58608306|gb|CK036339.1|CK036339
EST:     GTACTGTCCTGCAGGCACTAGGAGCTGGTGGTTTGAAGGCTGCTCAACAG                         GAGCAAAATATCCGGAATATACCTCTCCCTACATTCACATCTGGTAGTCAT
genomic: GTACTGTCCTGCAGGCACTAGGAGCGGGTGGTTTGAAGGCTGCTCAACAGgtttcaattt ... catattgcagGAGCAAAATATCCGGAATATACCTCTCCCTACATTCACATCTGGTAGTCAT
EST: gi|58591002|gb|CF989310.1|CF989310
EST:     GTACTGTCCTGCAGGCACTAGGAGCGGGTGGTTTGAAGGCTGCTCAACAG                         GAGCAAAATATCCGGAATATACCTCTCCCTACATTCACATCTGGTAGTCAT
genomic: GTACTGTCCTGCAGGCACTAGGAGCGGGTGGTTTGAAGGCTGCTCAACAGgtttcaattt ... catattgcagGAGCAAAATATCCGGAATATACCTCTCCCTACATTCACATCTGGTAGTCAT
EST: gi|218483231|gb|FG956163.1|FG956163
EST:     GTCCTGCAGGCACTA-GAGCGGGTGG-TTGAAGGCTGCTCAACAG                         GAGCAAAATATCCGGAATATACCTCTCCCTACATTCACATCTGGTA-TCA-
genomic: GTCCTGCAGGCACTAGGAGCGGGTGGTTTGAAGGCTGCTCAACAGgtttcaattt ... catattgcagGAGCAAAATATCCGGAATATACCTCTCCCTACATTCACATCTGGTAGTCAT
EST: gi|58602916|gb|CK013444.1|CK013444
EST:     GTACTGTCCTGCAGGCACTAGGAGCGGGTGGTTTGAAGGCTGGTCAACAG                         GAGCAAAATATCCGGAATATACCTCTCCCTACGTTCACATCTGGTAGTCAT
genomic: GTACTGTCCTGCAGGCACTAGGAGCGGGTGGTTTGAAGGCTGCTCAACAGgtttcaattt ... catattgcagGAGCAAAATATCCGGAATATACCTCTCCCTACATTCACATCTGGTAGTCAT
EST: gi|218482847|gb|FG953463.1|FG953463
EST:     GTACTGTCCTGCAGGCACTAGGAGCGGGTGGTTTGAAGGCTGCTCAACAG                         GAGCAAAATATCCGGAATATACCTCTCCCTACATTCACATCTGGTAGTCAT
genomic: GTACTGTCCTGCAGGCACTAGGAGCGGGTGGTTTGAAGGCTGCTCAACAGgtttcaattt ... catattgcagGAGCAAAATATCCGGAATATACCTCTCCCTACATTCACATCTGGTAGTCAT
EST: gi|58603374|gb|CK013902.1|CK013902
EST:     GTACTGTCCTGCAGGCACTAGGAGCGGGTGGTTTGAAGGCTGCTCAACAG                         GAGCAAAATATCCGGAATATACCTCTCCCTACATTCACATCTGGTAGTCAT
genomic: GTACTGTCCTGCAGGCACTAGGAGCGGGTGGTTTGAAGGCTGCTCAACAGgtttcaattt ... catattgcagGAGCAAAATATCCGGAATATACCTCTCCCTACATTCACATCTGGTAGTCAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agctcactatccactcaattctaactgtactgatgaatcaattttcatattgcagGAGCAAAATATCCGGAATATACCTCTCCCTACATTCACATCTGGTAGTCATTTGGCAGTTACTGATGCACAAGGGCCACCACTTCCTTCAAAG
                                         ttttcat  CT-rich tract
                                   aatcaattttcatatt  TA-rich tract