1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaatggaactttattttgtaatattgaattactgaaattgaaggaatgcttacaatgtgatagaagagttatacgtatttgggattagtgaacattttgaaactttggttttcatatctgacttgttttattgggattagtgaacactttgaactttggttttgcatatctgacttgttttattgttcagCATGACAACTCCTAGCGGAAGGTTTGCCCCTCACAAAAGAATATGCCTATCAATGAGTGACT
species | Oryza sativa |
transcript | LOC_Os06g09330.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GGGAAACTCAAATTTCCACCTGATTACCCTTTTAAGCCTCCAAGCATCAG CATGACAACTCCTAGCGGAAGGTTTGCCCCTCACAAAAGAATATGCCTATCEST: gi|86495662|gb|CI138295.1|CI138295
genomic: GGGAAACTCAAATTTCCACCTGATTACCCTTTTAAGCCTCCAAGCATCAGgtaatggaac ... tattgttcagCATGACAACTCCTAGCGGAAGGTTTGCCCCTCACAAAAGAATATGCCTATC
EST: CCAAGCATCAG CATGACAACTCCTAGCGGAAGGTTTGCCCCTCACAAAAGAATATGCCTATCEST: gi|8956608|gb|BE230283.1|BE230283
genomic: CCAAGCATCAGgtaatggaac ... tattgttcagCATGACAACTCCTAGCGGAAGGTTTGCCCCTCACAAAAGAATATGCCTATC
EST: GGGAAACTCAAATTTCCACCTGATTACCCTTTTAAGCCTCCAAGCATCAG CATGACAACTCCTAGCGGAAGGTTTGCCCCTCACAAAAGAATATGCCTATCEST: gi|7134934|gb|AU082746.1|AU082746
genomic: GGGAAACTCAAATTTCCACCTGATTACCCTTTTAAGCCTCCAAGCATCAGgtaatggaac ... tattgttcagCATGACAACTCCTAGCGGAAGGTTTGCCCCTCACAAAAGAATATGCCTATC
EST: GGGAAACTCAAATTTCCACCTGATTACCCTTTTAAGCCTCCAAGCATCAG CATGACAACTCCTAGCGGAAGGTTTGCCCCTCACAAAAGAATATGCCTATCEST: gi|218487817|gb|FG955497.1|FG955497
genomic: GGGAAACTCAAATTTCCACCTGATTACCCTTTTAAGCCTCCAAGCATCAGgtaatggaac ... tattgttcagCATGACAACTCCTAGCGGAAGGTTTGCCCCTCACAAAAGAATATGCCTATC
EST: GGGAAACTC-AATTTCCACCTGATTACCCTTTTAAGCCTCCAAGCATCAG CATGACAACTCCTAGCGGAAGGTTTGCCCCTCACAAAAGAATATGCCTATCEST: gi|218490255|gb|FG953556.1|FG953556
genomic: GGGAAACTCAAATTTCCACCTGATTACCCTTTTAAGCCTCCAAGCATCAGgtaatggaac ... tattgttcagCATGACAACTCCTAGCGGAAGGTTTGCCCCTCACAAAAGAATATGCCTATC
EST: GGGAAACTCAAATTTCCACCTGATTACCCTTTTAAGCCTCCAAGCATCAG CATGACAACTCCTAGCGGAAGGTTTGCCCCTCACAAAAGAATATGCCTATCEST: gi|218494998|gb|FG948724.1|FG948724
genomic: GGGAAACTCAAATTTCCACCTGATTACCCTTTTAAGCCTCCAAGCATCAGgtaatggaac ... tattgttcagCATGACAACTCCTAGCGGAAGGTTTGCCCCTCACAAAAGAATATGCCTATC
EST: GGGAAACTCAAATTTCCACCTGATTACCCTTTTAAGCCTCCAAGCATCAG CATGACAACTCCTAGCGGAAGGTTTGCCCCTCACAAAAGAATATGCCTATC
genomic: GGGAAACTCAAATTTCCACCTGATTACCCTTTTAAGCCTCCAAGCATCAGgtaatggaac ... tattgttcagCATGACAACTCCTAGCGGAAGGTTTGCCCCTCACAAAAGAATATGCCTATC
attagtgaacactttgaactttggttttgcatatctgacttgttttattgttcagCATGACAACTCCTAGCGGAAGGTTTGCCCCTCACAAAAGAATATGCCTATCAATGAGTGACT
atctgac putative branch site (score: 79)
cttgtttt CT-rich tract
ttgttttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatggaactttattttgtaatattgaattactgaaattgaaggaatgcttacaatgtgatagaagagttatacgtatttgggattagtgaacattttgaaactttggttttcatatctgacttgttttattgggattagtgaacactttgaactttggttttgcatatctgacttgttttattgttcagCATGACAACTCCTAGCGGAAGGTTTGCCCCTCACAAAAGAATATGCCTATCAATGAGTGACT
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