1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gttcgctgttcttgctcttttagtttccagtttacggcgataaaatgtgtgcgccctgataacatttggttggaatgcagcttcatttttttttctaatagctattgctgatgcaaactatgttacttataaggtttcaactacaggagtataattgttcttttacctcactgtaaatttcagGTGATGCTCTGAAGAAGCTTGAGGAGAAGGGTGTGGTCATTCGTTTTGTCATTGGTCGGAG
species | Oryza sativa |
transcript | LOC_Os06g08005.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TGGTTCCCGGCTCAAGAGGAACACCTTCCGTGGCTCATGGATGCCGAGAG GTGATGCTCTGAAGAAGCTTGAGGAGAAGGGTGTGGTCATTCGTTTTGTCAEST: gi|300215905|gb|HO088531.1|HO088531
genomic: TGGTTCCCGGCTCAAGAGGAACACCTTCCGTGGCTCATGGATGCCGAGAGgttcgctgtt ... taaatttcagGTGATGCTCTGAAGAAGCTTGAGGAGAAGGGTGTGGTCATTCGTTTTGTCA
EST: TGGTTCCCGGCTCAAGAGGAACACCTTCCGTGGCTCATGGATGCCGAGAG GTGATGCTCTGAAGAAGCTTGAGGAGAAGGGTGTGGTCATTCGTTTTGTCAEST: gi|218501509|gb|FG952275.1|FG952275
genomic: TGGTTCCCGGCTCAAGAGGAACACCTTCCGTGGCTCATGGATGCCGAGAGgttcgctgtt ... taaatttcagGTGATGCTCTGAAGAAGCTTGAGGAGAAGGGTGTGGTCATTCGTTTTGTCA
EST: TGGTTCCCGGCTCAAGAGGAACACCTTCCGTGGCTCATGGATGCCGAGAG GTGATGCTCTGAAGAAGCTTGAGGAGAAGGGTGTGGTCATTCGTTTTGTCA
genomic: TGGTTCCCGGCTCAAGAGGAACACCTTCCGTGGCTCATGGATGCCGAGAGgttcgctgtt ... taaatttcagGTGATGCTCTGAAGAAGCTTGAGGAGAAGGGTGTGGTCATTCGTTTTGTCA
ataaggtttcaactacaggagtataattgttcttttacctcactgtaaatttcagGTGATGCTCTGAAGAAGCTTGAGGAGAAGGGTGTGGTCATTCGTTTTGTCATTGGTCGGAG
acctcac putative branch site (score: 45)
tataattgttctttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttcgctgttcttgctcttttagtttccagtttacggcgataaaatgtgtgcgccctgataacatttggttggaatgcagcttcatttttttttctaatagctattgctgatgcaaactatgttacttataaggtttcaactacaggagtataattgttcttttacctcactgtaaatttcagGTGATGCTCTGAAGAAGCTTGAGGAGAAGGGTGTGGTCATTCGTTTTGTCATTGGTCGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA