1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...atattgtacaaaccacaccacaattatagcaacgtctgatgttaagacaatttctgttttgtgcatgtgtgctcactcaactattaaattcttataacagCACAAAGGCTTCAGCTTGCAAGTGTCTACAAAGGAGAGGCGGAGAAGATTCTTCTGGTGAAGAAAGCAGAAGCAGAGGCAGAGGCAAAACACCTTTCCGG
species | Oryza sativa |
transcript | LOC_Os06g04460.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CATCATCCCTGATGCGGCTGTACGCAGAGCAATGAATGAAATAAATGCAG CACAAAGGCTTCAGCTTGCAAGTGTCTACAAAGGAGAGGCGGAGAAGATTCEST: gi|157651811|gb|EX451445.1|EX451445
genomic: CATCATCCCTGATGCTGCTGTACGCAGAGCAATGAATGAAATAAATGCAGgtatggtgcc ... cttataacagCACAAAGGCTTCAGCTTGCAAGTGTCTACAAAGGAGAGGCGGAGAAGATTC
EST: GTACGCAGAGCAATGAATGAAATAAATGCAG CACAAAGGCTTCAGCTTGCAAGTGTCTACAAAGGAGAGGCGGAGAAGATTCEST: gi|157651801|gb|EX451435.1|EX451435
genomic: GTACGCAGAGCAATGAATGAAATAAATGCAGgtatggtgcc ... cttataacagCACAAAGGCTTCAGCTTGCAAGTGTCTACAAAGGAGAGGCGGAGAAGATTC
EST: GTACGCAGAGCAATGAATGAAATAAATGCAG CACAAAGGCTTCAGCTTGCAAGTGTCTACAAAGGAGAGGCGGAGAAGATTCEST: gi|218488749|gb|FG970419.1|FG970419
genomic: GTACGCAGAGCAATGAATGAAATAAATGCAGgtatggtgcc ... cttataacagCACAAAGGCTTCAGCTTGCAAGTGTCTACAAAGGAGAGGCGGAGAAGATTC
EST: CATCATCCCTGATGCGGCTGTACGCAGAGCAATGAATGAAATAAATGCAG CACAAAGGCTTCAGCTTGCAAGTGTCTACAAAGGAGAGGCGGAGAAGATTCEST: gi|55410556|gb|CV722932.1|CV722932
genomic: CATCATCCCTGATGCTGCTGTACGCAGAGCAATGAATGAAATAAATGCAGgtatggtgcc ... cttataacagCACAAAGGCTTCAGCTTGCAAGTGTCTACAAAGGAGAGGCGGAGAAGATTC
EST: CATCATCCCTGATGCTGCTGTACGCAGAGCAATGAATGAAATAAATGCAG CACAAAGGCTTCAGCTTGCAAGTGTCTACAAAGGAGAGGCGGAGAAGATTC
genomic: CATCATCCCTGATGCTGCTGTACGCAGAGCAATGAATGAAATAAATGCAGgtatggtgcc ... cttataacagCACAAAGGCTTCAGCTTGCAAGTGTCTACAAAGGAGAGGCGGAGAAGATTC
gacaatttctgttttgtgcatgtgtgctcactcaactattaaattcttataacagCACAAAGGCTTCAGCTTGCAAGTGTCTACAAAGGAGAGGCGGAGAAGATTCTTCTGGTGAAGAAAGCAGAAGCAGAGGCAGAGGCAAAACACCTTTCCGG
tgctcac putative branch site (score: 3)
ttcttat putative PPT
tcaactattaaattct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atattgtacaaaccacaccacaattatagcaacgtctgatgttaagacaatttctgttttgtgcatgtgtgctcactcaactattaaattcttataacagCACAAAGGCTTCAGCTTGCAAGTGTCTACAAAGGAGAGGCGGAGAAGATTCTTCTGGTGAAGAAAGCAGAAGCAGAGGCAGAGGCAAAACACCTTTCCGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - -gtacaaa
- - - - - - - - accacaa
- - - - - - - - - - - - - - - - - -ctgatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgctcac