1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
gtatgctattagttgagacatgagacctctattacttgtatggtcaatctgttaagagtcgttaatttgtgaactaagtgaaaataattcatttgctctttttcagGTCGTTGCAGCTGGTGCCAATCCTGTGCAAATTACACGTGGTATCGAGAAAACTGCGAAAGCACTAGTTGAAGAGCTAAAGAAATTGTCAAAGGAG
species | Oryza sativa |
transcript | LOC_Os06g02380.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CAACTACTTCTGTTGTGCTTGCTCAGGGGCTGATTGCTGAGGGTGTTAAG GTCGTTGCAGCTGGTGCCAATCCTGTGCAAATTACACGTGGTATCGAGAAAEST: gi|66922815|gb|CX109663.1|CX109663
genomic: CAACTACTTCTGTTGTGCTTGCTCAGGGGCTGATTGCTGAGGGTGTTAAGgtatgctatt ... tctttttcagGTCGTTGCAGCTGGTGCCAATCCTGTGCAAATTACACGTGGTATCGAGAAA
EST: CAACTACTTCTGTTGTGCTTGCTCANGGGCTGATTGCTGAGGGTGTTAAG GTCGTTGCAGCTGGTGCCAATCCTGTGCAAATTACACGTGGTATCGAGAAAEST: gi|58668459|gb|CK057145.1|CK057145
genomic: CAACTACTTCTGTTGTGCTTGCTCAGGGGCTGATTGCTGAGGGTGTTAAGgtatgctatt ... tctttttcagGTCGTTGCAGCTGGTGCCAATCCTGTGCAAATTACACGTGGTATCGAGAAA
EST: CAACTACTTCTGTTGTGCTTGCTCAGGGGCTGATTGCTGAGGGTGTTAAG GTCGTTGCAGCTGGTGCCAATCCTGTGCAAATTACACGTGGTATCGAGAAAEST: gi|29632317|gb|CB637326.1|CB637326
genomic: CAACTACTTCTGTTGTGCTTGCTCAGGGGCTGATTGCTGAGGGTGTTAAGgtatgctatt ... tctttttcagGTCGTTGCAGCTGGTGCCAATCCTGTGCAAATTACACGTGGTATCGAGAAA
EST: CAACTACTTCTGTTGTGCTTGCTCAGGGGCTGATTGCTGAGGGTGTTAAG GTCGTTGCAGCTGGTGCCAATCCTGTGCAAATTACACGTGGTATCG
genomic: CAACTACTTCTGTTGTGCTTGCTCAGGGGCTGATTGCTGAGGGTGTTAAGgtatgctatt ... tctttttcagGTCGTTGCAGCTGGTGCCAATCCTGTGCAAATTACACGTGGTATCG
ttaagagtcgttaatttgtgaactaagtgaaaataattcatttgctctttttcagGTCGTTGCAGCTGGTGCCAATCCTGTGCAAATTACACGTGGTATCGAGAAAACTGCGAAAGCACTAGTTGAAGAGCTAAAGAAATTGTCAAAGGAG
cgttaat putative branch site (score: 256)
ttcatttgctcttttt putative PPT
tgaaaataattcattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgctattagttgagacatgagacctctattacttgtatggtcaatctgttaagagtcgttaatttgtgaactaagtgaaaataattcatttgctctttttcagGTCGTTGCAGCTGGTGCCAATCCTGTGCAAATTACACGTGGTATCGAGAAAACTGCGAAAGCACTAGTTGAAGAGCTAAAGAAATTGTCAAAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG