1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
gttatgcggttctaatcaagctctcaccctttctaaatttgaatgcttaagcatttgttctaattctagcttgttgtcctatctttcattccacagGTCTCACCGCAAGAAGCAAGTAGAGCCTCCAATTTCATGAGAGCATCCAAATATGGAATGCCAATTACTGCTAATGGGGTACATAGTTTGTTCTCATG
species | Oryza sativa |
transcript | LOC_Os06g01630.5 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CAGATTTTTCCCATGACAGGCAGTCTGGAAAAGAGCTTCAGAATTTCAAG GTCTCACCGCAAGAAGCAAGTAGAGCCTCCAATTTCATGAGAGCATCCAAAEST: gi|58683216|gb|CK071903.1|CK071903
genomic: CAGATTTTTCCCATGACAGGCAGTCTGGAAAAGAGCTTCAGAATTTCAAGgttatgcggt ... cattccacagGTCTCACCGCAAGAAGCAAGTAGAGCCTCCAATTTCATGAGAGCATCCAAA
EST: CAGATTTTTCCCATGACAGGCAGTCTGGAAAAGAGCTTCAGAATTTCAAG GTCTCACCGCAAGAAGCAAGTAGAGCCTCCAATTTCATGAGAGCATCCAAAEST: gi|88299497|gb|CI574610.1|CI574610
genomic: CAGATTTTTCCCATGACAGGCAGTCTGGAAAAGAGCTTCAGAATTTCAAGgttatgcggt ... cattccacagGTCTCACCGCAAGAAGCAAGTAGAGCCTCCAATTTCATGAGAGCATCCAAA
EST: CAGATTTTTCCCATGACAGGCAGTCTGGAAAAGAGCTTCAGAATTTCAAG GTCTCACCGCAAGAAGCAAGTAGAGCCTCCAATTTCATGAGAGCATCCAAAEST: gi|33659417|gb|CF282030.1|CF282030
genomic: CAGATTTTTCCCATGACAGGCAGTCTGGAAAAGAGCTTCAGAATTTCAAGgttatgcggt ... cattccacagGTCTCACCGCAAGAAGCAAGTAGAGCCTCCAATTTCATGAGAGCATCCAAA
EST: CAGATTTTTCCCATGACAGGCAGTCTGGAAAAGAGCTTCAGAATTTCAAG GTCTCACCGCAAGAAGCAAGTAGAGCCTCCAATTTCATGAGAGCATCCAAAEST: gi|58610517|gb|CK038229.1|CK038229
genomic: CAGATTTTTCCCATGACAGGCAGTCTGGAAAAGAGCTTCAGAATTTCAAGgttatgcggt ... cattccacagGTCTCACCGCAAGAAGCAAGTAGAGCCTCCAATTTCATGAGAGCATCCAAA
EST: CAGATTTTTCCCATGACAGGCAGTCTGGAAAAGAGCTTCAGAATTTCAAG GTCTCACCGCAAGAAGCAAGTAGAGCCTCCAATTTCATGAGAGCATCCAAA
genomic: CAGATTTTTCCCATGACAGGCAGTCTGGAAAAGAGCTTCAGAATTTCAAGgttatgcggt ... cattccacagGTCTCACCGCAAGAAGCAAGTAGAGCCTCCAATTTCATGAGAGCATCCAAA
aatgcttaagcatttgttctaattctagcttgttgtcctatctttcattccacagGTCTCACCGCAAGAAGCAAGTAGAGCCTCCAATTTCATGAGAGCATCCAAATATGGAATGCCAATTACTGCTAATGGGGTACATAGTTTGTTCTCATG
ttctaat putative branch site (score: 11)
tcctatctttcattcc putative PPT
ttctaatt TA-rich tract