1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtaatactcctatctactcttcctctcttatctattaagatgctacatttcttctttaatttggaatttcttcaatatcttgttgcatggttcatgattttatccccatgtgcagTGGTGGCCTGGTGGCTTGGGAAAAGCTTCCACTCATGCAGTTGTGTATGCTCGTCTGATAACTGAAGGAAAGGACTACGGCATACATG
species | Oryza sativa |
transcript | LOC_Os06g01390.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CAAAGACTGATGAGTTTGTTATACACAGCCCGACACTGACCTCTAGCAAG TGGTGGCCTGGTGGCTTGGGAAAAGCTTCCACTCATGCAGTTGTGTATGCTEST: gi|58612003|gb|CK039715.1|CK039715
genomic: CAAAGACTGATGAGTTTGTTATACACAGCCCGACACTGACCTCTAGCAAGgtaatactcc ... ccatgtgcagTGGTGGCCTGGTGGCTTGGGAAAAGCTTCCACTCATGCAGTTGTGTATGCT
EST: CTGACCTCTACCAAG TGGTGGCCTGGTGGCTTGTGGAAAAGCTTCCACCCATGCAGTTGTGTATGCEST: gi|29630576|gb|CB635585.1|CB635585
genomic: CTGACCTCTAGCAAGgtaatactcc ... ccatgtgcagTGGTGGCCTGGTGGCTTG-GGAAAAGCTTCCACTCATGCAGTTGTGTATGC
EST: CAAAGACTGATGAGTTTGTTATACACAGCCCGACACTGACCTCTAGCAAG TGGTGGCCTGGTGGCTTGGGAAAAGCTTCCACCCATGCAGTTGTGTATGCTEST: gi|58663554|gb|CK052240.1|CK052240
genomic: CAAAGACTGATGAGTTTGTTATACACAGCCCGACACTGACCTCTAGCAAGgtaatactcc ... ccatgtgcagTGGTGGCCTGGTGGCTTGGGAAAAGCTTCCACTCATGCAGTTGTGTATGCT
EST: CAAAGACTGATGAGTTTGTTATACACAGCCCGACACTGACCTCTAGCAAG TGGTGGCCTGGTGGCTTGGGAAAAGCTTCCACTCATGCAGTTGTGTATGCTEST: gi|29666537|gb|CB662812.1|CB662812
genomic: CAAAGACTGATGAGTTTGTTATACACAGCCCGACACTGACCTCTAGCAAGgtaatactcc ... ccatgtgcagTGGTGGCCTGGTGGCTTGGGAAAAGCTTCCACTCATGCAGTTGTGTATGCT
EST: CAAAGACTGATGAGTTTGTTATACACAGCCCGACACTGACCTCTAGCAAG TGGTGGCCTGGTGGCTTGGGAAAAGCTTCCACTCATGCAGTTGTGTATGCTEST: gi|29680079|gb|CB676354.1|CB676354
genomic: CAAAGACTGATGAGTTTGTTATACACAGCCCGACACTGACCTCTAGCAAGgtaatactcc ... ccatgtgcagTGGTGGCCTGGTGGCTTGGGAAAAGCTTCCACTCATGCAGTTGTGTATGCT
EST: CAAAGACTGATGAGTTTGTTATACACAGCCCGACACTGACCTCTAGCAAG TGGTGGCCTGGTGGCTTGGGAAAAGCTTCCACTCATGCAGTTGTGTATGCTEST: gi|2443069|gb|C74840.1|C74840
genomic: CAAAGACTGATGAGTTTGTTATACACAGCCCGACACTGACCTCTAGCAAGgtaatactcc ... ccatgtgcagTGGTGGCCTGGTGGCTTGGGAAAAGCTTCCACTCATGCAGTTGTGTATGCT
EST: CAAAGACTGATGAGTTTGTTATACACAGCCCGACACTGACCTCTAGCAAG TGGTGGCCTGGTGGCTTGGGAAAAGCTTCCACTCATGCAGTTGTGTATGCT
genomic: CAAAGACTGATGAGTTTGTTATACACAGCCCGACACTGACCTCTAGCAAGgtaatactcc ... ccatgtgcagTGGTGGCCTGGTGGCTTGGGAAAAGCTTCCACTCATGCAGTTGTGTATGCT
ttggaatttcttcaatatcttgttgcatggttcatgattttatccccatgtgcagTGGTGGCCTGGTGGCTTGGGAAAAGCTTCCACTCATGCAGTTGTGTATGCTCGTCTGATAACTGAAGGAAAGGACTACGGCATACATG
ttttatcccc CT-rich tract
atgattttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatactcctatctactcttcctctcttatctattaagatgctacatttcttctttaatttggaatttcttcaatatcttgttgcatggttcatgattttatccccatgtgcagTGGTGGCCTGGTGGCTTGGGAAAAGCTTCCACTCATGCAGTTGTGTATGCTCGTCTGATAACTGAAGGAAAGGACTACGGCATACATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA