1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...gttgtagacgggaatggtttcatatctcaattgaataaacacgatgagttaatttccttctggttggtttgttgaatgcacctcaaatgatttattttagGTTCTTGTGCGGAATATACCTCCAGATCCTGATGAATCAATTAGTGAGCTCGTGGAGCATTTCTTCCTTGTTAATCATCCTGATCATTATCTAAGACACC
species | Oryza sativa |
transcript | LOC_Os05g51630.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TGAGATTGCGGTTTCTTGCTTCAGAGAAACGGCGACCAGACCAGTTTACA GTTCTTGTGCGGAATATACCTCCAGATCCTGATGAATCAATTAGTGAGCTCEST: gi|5607371|gb|AU076043.1|AU076043
genomic: TGAGATTGCGGTTTCTTGCTTCAGAGAAACGGCGACCAGACCAGTTTACAgtatgatctt ... tttattttagGTTCTTGTGCGGAATATACCTCCAGATCCTGATGAATCAATTAGTGAGCTC
EST: TGAGATTGCGGTTTCTTGCTTCAGAGAAACGGCGACCAGACCAGTTTACA GTTCTTGTGCGGAATATACCTCCAGATCCTGATGAATCAATTAGTGAGCTCEST: gi|29683379|gb|CB679654.1|CB679654
genomic: TGAGATTGCGGTTTCTTGCTTCAGAGAAACGGCGACCAGACCAGTTTACAgtatgatctt ... tttattttagGTTCTTGTGCGGAATATACCTCCAGATCCTGATGAATCAATTAGTGAGCTC
EST: TGAGATTGCGGTTTCTTGCTTCAGAGAAACGGCGACCAGACCAGTTTACA GTTCTTGTGCGGAATATACCTCCAGATCCTGATGAATCAATTAGTGAGCTCEST: gi|58693629|gb|CK082316.1|CK082316
genomic: TGAGATTGCGGTTTCTTGCTTCAGAGAAACGGCGACCAGACCAGTTTACAgtatgatctt ... tttattttagGTTCTTGTGCGGAATATACCTCCAGATCCTGATGAATCAATTAGTGAGCTC
EST: TGAGATTGCGGTTTCTTGCTTCAGAGAAACGGCGACCAGACCAGTTTACA GTTCTTGTGCGGAATATACCTCCAGATCCTGATGAATCAATTAGTGAGCTC
genomic: TGAGATTGCGGTTTCTTGCTTCAGAGAAACGGCGACCAGACCAGTTTACAgtatgatctt ... tttattttagGTTCTTGTGCGGAATATACCTCCAGATCCTGATGAATCAATTAGTGAGCTC
gagttaatttccttctggttggtttgttgaatgcacctcaaatgatttattttagGTTCTTGTGCGGAATATACCTCCAGATCCTGATGAATCAATTAGTGAGCTCGTGGAGCATTTCTTCCTTGTTAATCATCCTGATCATTATCTAAGACACC
agttaat putative branch site (score: 4)
tttatttt putative PPT
tcaaatgatttatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttgtagacgggaatggtttcatatctcaattgaataaacacgatgagttaatttccttctggttggtttgttgaatgcacctcaaatgatttattttagGTTCTTGTGCGGAATATACCTCCAGATCCTGATGAATCAATTAGTGAGCTCGTGGAGCATTTCTTCCTTGTTAATCATCCTGATCATTATCTAAGACACC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA