1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...atccacgtctccttttttagcattgagttatcacgcacaacactacagcgtgacctgttgaatttacaacagctgagctgaatgtgttttttaccttcagGTTCGAGGAGCGGAATACAATAATGTAAGGAGCCAGCTTAGTGCGATCAACAGAAAGCAAACTGGAAG
species | Oryza sativa |
transcript | LOC_Os05g51530.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TTGTCGGCAGCATCCAATCACAGGTCTCCAAGATTGAAGATGACATGAAG GTTCGAGGAGCGGAATACAATAATGTAAGGAGCCAGCTTAGTGCGATCAACEST: gi|29662007|gb|CB658282.1|CB658282
genomic: TTGTCGGCAGCATCCAATCACAGGTCTCCAAGATTGAAGATGACATGAAGgtgatgacct ... ttaccttcagGTTCGAGGAGCGGAATACAATAATGTAAGGAGCCAGCTTAGTGCGATCAAC
EST: TTGTCGGCAGCATCCAATCACAGGTCTCCAAGATTGAAGATGACATGAAG GTTCGAGGAGCGGAATACAATAATGTAAGGAGCCAGCTTAGTGCGATCAACEST: gi|58595941|gb|CK006469.1|CK006469
genomic: TTGTCGGCAGCATCCAATCACAGGTCTCCAAGATTGAAGATGACATGAAGgtgatgacct ... ttaccttcagGTTCGAGGAGCGGAATACAATAATGTAAGGAGCCAGCTTAGTGCGATCAAC
EST: TTGTCGGCAGCATCCAATCACAGGTCTCCAAGATTGAAGATGACATGAAG GTTCGAGGAGCGGAATAEST: gi|29612869|gb|CB617882.1|CB617882
genomic: TTGTCGGCAGCATCCAATCACAGGTCTCCAAGATTGAAGATGACATGAAGgtgatgacct ... ttaccttcagGTTCGAGGAGCGGAATA
EST: TTGTCGGCAGCATCCAATCACAGGTCTCCAAGATTGAAGATGACATGAAG GTTCGAGGAGCGGAATACAATAATGTAAGGAGCCAGCTTAGTGCGATCAACEST: gi|58667113|gb|CK055799.1|CK055799
genomic: TTGTCGGCAGCATCCAATCACAGGTCTCCAAGATTGAAGATGACATGAAGgtgatgacct ... ttaccttcagGTTCGAGGAGCGGAATACAATAATGTAAGGAGCCAGCTTAGTGCGATCAAC
EST: TTGTCGGCAGCATCCAATCACAGGTCTCCAAGATTGAAGATGACATGAAG GTTCGAGGAGCGGAATACAATAATGTAAGGAGCCAGCTTAGTGCGATCAACEST: gi|58666270|gb|CK054956.1|CK054956
genomic: TTGTCGGCAGCATCCAATCACAGGTCTCCAAGATTGAAGATGACATGAAGgtgatgacct ... ttaccttcagGTTCGAGGAGCGGAATACAATAATGTAAGGAGCCAGCTTAGTGCGATCAAC
EST: TTGTCGGCAGCATCCAATCACAGGTCTCCAAGATTGAAGATGACATGAAG GTTCGAGGAGCGGAATACAATAATGTAAGGAGCCAGCTTAGTGCGATCAACEST: gi|218479849|gb|FG959490.1|FG959490
genomic: TTGTCGGCAGCATCCAATCACAGGTCTCCAAGATTGAAGATGACATGAAGgtgatgacct ... ttaccttcagGTTCGAGGAGCGGAATACAATAATGTAAGGAGCCAGCTTAGTGCGATCAAC
EST: TTGTCGGCAGCATCCAATCACAGGTCTCCAAGATTGAAGATGACATGAAG GTTCGAGGAGCGGAATACAATAATGTAAGGAGCCAGCTTAGTGCGATCAACEST: gi|218498003|gb|FG943208.1|FG943208
genomic: TTGTCGGCAGCATCCAATCACAGGTCTCCAAGATTGAAGATGACATGAAGgtgatgacct ... ttaccttcagGTTCGAGGAGCGGAATACAATAATGTAAGGAGCCAGCTTAGTGCGATCAAC
EST: TTGTCGGCAGCATCCAATCACAGGTCTCCAAGATTGAAGATGACATGAAG GTTCGAGGAGCGGAATACAATAATGTAAGGAGCCAGCTTAGTGCGATCAACEST: gi|33653619|gb|CF276233.1|CF276233
genomic: TTGTCGGCAGCATCCAATCACAGGTCTCCAAGATTGAAGATGACATGAAGgtgatgacct ... ttaccttcagGTTCGAGGAGCGGAATACAATAATGTAAGGAGCCAGCTTAGTGCGATCAAC
EST: TTGTCGGCAGCATCCAATCACAGGTCTCCAAGATTGAAGATGACATGAAG GTTCGAGGAGCGGAATACAATAATGTAAGGAGCCAGCTTAGTGCGATCAACEST: gi|58686384|gb|CK075071.1|CK075071
genomic: TTGTCGGCAGCATCCAATCACAGGTCTCCAAGATTGAAGATGACATGAAGgtgatgacct ... ttaccttcagGTTCGAGGAGCGGAATACAATAATGTAAGGAGCCAGCTTAGTGCGATCAAC
EST: TTGTCGGCAGCATCCAATCACAGGTCTCCAAGATTGAAGATGACATGAAG GTTCGAGGAGCGGAATACAATAATGTAAGGAGCCAGCTTAGTGCGATCAACEST: gi|58594698|gb|CF993006.1|CF993006
genomic: TTGTCGGCAGCATCCAATCACAGGTCTCCAAGATTGAAGATGACATGAAGgtgatgacct ... ttaccttcagGTTCGAGGAGCGGAATACAATAATGTAAGGAGCCAGCTTAGTGCGATCAAC
EST: TTGTCGGCAGCATCCAATCACAGGTCTCCAAGATTGAAGATGACATGAAG GTTCGAGGAGCGGAATACAATAATGCTCAGGAGCCAGCTTAGTGCGATCAAEST: gi|58600826|gb|CK011354.1|CK011354
genomic: TTGTCGGCAGCATCCAATCACAGGTCTCCAAGATTGAAGATGACATGAAGgtgatgacct ... ttaccttcagGTTCGAGGAGCGGAATACAATAATG-TAAGGAGCCAGCTTAGTGCGATCAA
EST: TTGTCGGCAGCATCCAATCACAGGTCTCCAAGATTGAAGATGACATGAAG GTTCGAGGAGCGGAATACAATAATGTAAGGAGCCAGCTTAGTGCGATCAACEST: gi|29613101|gb|CB618114.1|CB618114
genomic: TTGTCGGCAGCATCCAATCACAGGTCTCCAAGATTGAAGATGACATGAAGgtgatgacct ... ttaccttcagGTTCGAGGAGCGGAATACAATAATGTAAGGAGCCAGCTTAGTGCGATCAAC
EST: TTGTCGGCAGCATCCAATCACAGGTCTCCAAGATTGAAGATGACATGAAG GTTCGAGGAGCGGAATACAATAATGTAAGGAGCCAGCTTAGTGCGATCAACEST: gi|58606956|gb|CK034989.1|CK034989
genomic: TTGTCGGCAGCATCCAATCACAGGTCTCCAAGATTGAAGATGACATGAAGgtgatgacct ... ttaccttcagGTTCGAGGAGCGGAATACAATAATGTAAGGAGCCAGCTTAGTGCGATCAAC
EST: TTGTCGGCAGCATCCAATCACAGGTCTCCAAGATTGAAGATGACATGAAG GTTCGAGGAGCGGAATACAATAATGTAAGGAGCCAGCTTAGTGCGATCAACEST: gi|58681691|gb|CK070378.1|CK070378
genomic: TTGTCGGCAGCATCCAATCACAGGTCTCCAAGATTGAAGATGACATGAAGgtgatgacct ... ttaccttcagGTTCGAGGAGCGGAATACAATAATGTAAGGAGCCAGCTTAGTGCGATCAAC
EST: TTGTCGGCAGCATCCAATCACAGGTCTCCAAGATTGAAGATGACATGAAG GTTCGAGGAGCGGAATACAATAATGTAAGGEST: gi|58596246|gb|CK006774.1|CK006774
genomic: TTGTCGGCAGCATCCAATCACAGGTCTCCAAGATTGAAGATGACATGAAGgtgatgacct ... ttaccttcagGTTCGAGGAGCGGAATACAATAATGTAAGG
EST: TGTCGGCAGCATCCAATCACAGGTCTCCAAGATTGAAGATGACATTGAAG GTTCGAGGAGCGGAATACCATAATGTAAGGAGCCAGCTTAGTGCGATCAAEST: gi|58688997|gb|CK077684.1|CK077684
genomic: TGTCGGCAGCATCCAATCACAGGTCTCCAAGATTGAAGATGACAT-GAAGgtgatgacct ... ttaccttcagGTTCGAGGAGCGGAATACAATAATGTAAGGAGCCAGCTTAGTGCGATCAA
EST: TTGTCGGCAGCATCCAATCACAGGTCTCCAAGATTGAAGATGACATGAAG GTTCGAGGAGCGGAATACAATAATGTAAGGAGCCAGCTTAGTGCGATCAACEST: gi|25802832|gb|CA758793.1|CA758793
genomic: TTGTCGGCAGCATCCAATCACAGGTCTCCAAGATTGAAGATGACATGAAGgtgatgacct ... ttaccttcagGTTCGAGGAGCGGAATACAATAATGTAAGGAGCCAGCTTAGTGCGATCAAC
EST: TTGTCGGCAGCATCCAATCACAGGTCTCCAAGATTGAAGATGACATGAAG GTTCGAGGAGCGGAATACAATAATGTAAGGAGCCAGCTTAGTGCGATCAACEST: gi|33664188|gb|CF295155.1|CF295155
genomic: TTGTCGGCAGCATCCAATCACAGGTCTCCAAGATTGAAGATGACATGAAGgtgatgacct ... ttaccttcagGTTCGAGGAGCGGAATACAATAATGTAAGGAGCCAGCTTAGTGCGATCAAC
EST: TTGTCGGCAGCATCCAATCACAGGTCTCCAAGATTGAAGATGACATGAAG GTTCGAGGAGCGGAATACAATAATGTAAGGAGCCAGCTTAGTGCGATCAACEST: gi|27578007|gb|CB000702.1|CB000702
genomic: TTGTCGGCAGCATCCAATCACAGGTCTCCAAGATTGAAGATGACATGAAGgtgatgacct ... ttaccttcagGTTCGAGGAGCGGAATACAATAATGTAAGGAGCCAGCTTAGTGCGATCAAC
EST: TTGTCGGCAGCATCCAATCACAGGTCTCCAAGATTGAAGATGACATGAAG GTTCGAGGAGCGGAATACAATAATGTAAGGAGCCAGCTTAGTGCGATCAACEST: gi|58660817|gb|CK049497.1|CK049497
genomic: TTGTCGGCAGCATCCAATCACAGGTCTCCAAGATTGAAGATGACATGAAGgtgatgacct ... ttaccttcagGTTCGAGGAGCGGAATACAATAATGTAAGGAGCCAGCTTAGTGCGATCAAC
EST: TCGTCGGCAGCATCCAATCACAGGTCTCCAAGATTGAAGATGACATGAAG GTTCGAGGAGCGGAATACAATAATGTAAGGAGCCAGCTTAGTGCEST: gi|58596714|gb|CK007242.1|CK007242
genomic: TTGTCGGCAGCATCCAATCACAGGTCTCCAAGATTGAAGATGACATGAAGgtgatgacct ... ttaccttcagGTTCGAGGAGCGGAATACAATAATGTAAGGAGCCAGCTTAGTGC
EST: TTGTCGGCAGCATCCAATCACAGGTCTCCAAGATTGAAGATGACATGAAG GTTCGAGGAGCGGAATACAATAATGTAAGGAGCCAGCTTAGTGCGATCAACEST: gi|29613962|gb|CB618975.1|CB618975
genomic: TTGTCGGCAGCATCCAATCACAGGTCTCCAAGATTGAAGATGACATGAAGgtgatgacct ... ttaccttcagGTTCGAGGAGCGGAATACAATAATGTAAGGAGCCAGCTTAGTGCGATCAAC
EST: TTGTCGGCAGCATCCAATCACAGGTCTCCAAGATTGAAGATGACATGAAG GTTCGAGGAGCGGAATACAATAATGTAAGGAGCCAGCTTAGTGCGATCAAC
genomic: TTGTCGGCAGCATCCAATCACAGGTCTCCAAGATTGAAGATGACATGAAGgtgatgacct ... ttaccttcagGTTCGAGGAGCGGAATACAATAATGTAAGGAGCCAGCTTAGTGCGATCAAC
cagcgtgacctgttgaatttacaacagctgagctgaatgtgttttttaccttcagGTTCGAGGAGCGGAATACAATAATGTAAGGAGCCAGCTTAGTGCGATCAACAGAAAGCAAACTGGAAG
tgttttttaccttc CT-rich tract
ttgaattta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atccacgtctccttttttagcattgagttatcacgcacaacactacagcgtgacctgttgaatttacaacagctgagctgaatgtgttttttaccttcagGTTCGAGGAGCGGAATACAATAATGTAAGGAGCCAGCTTAGTGCGATCAACAGAAAGCAAACTGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - -cacgcac
- - - - - - - - - - - - - - - - - - - - - ctacagc
- - - - - - - - - - - - - - - - - - - - - - - - - - -cctgttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cagctga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgaatg