1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtatgatatgctgccccctcttttaactattgaaactcatcacttgcgcgtgggctaacagaaacatttggacttgaacctttagGTTTATTTTGAGTCAGATGAAGTGAAAGCATGCATTGTAACTTGTGGAGGCCTTTGCCCTGGTCTTAACACTGTCATCAGAGAGCTCGTCTGTGGTTTGG
species | Oryza sativa |
transcript | LOC_Os05g44922.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AGAACAGCCGGCGGGGGGTTCACTTCCGTCGTGCTGGACCTCATCAGAAG GTTTATTTTGAGTCAGATGAAGTGAAAGCATGCATTGTAACTTGTGGAGGCEST: gi|58667865|gb|CK056551.1|CK056551
genomic: AGAACAGCCGGCGGGGGGTTCACTTCCGTCGTGCTGGACCTCGTCAGAAGgtatgatatg ... gaacctttagGTTTATTTTGAGTCAGATGAAGTGAAAGCATGCATTGTAACTTGTGGAGGC
EST: AGAACAGCCGGCGGGGGGTTCACTTCCGTCGTGCTGGACCTCGTCAGAAG GTTTATTTTGAGTCAGATGAAGTGAAAGCATGCATTGTAACTTGTGGAGGCEST: gi|58609232|gb|CK037265.1|CK037265
genomic: AGAACAGCCGGCGGGGGGTTCACTTCCGTCGTGCTGGACCTCGTCAGAAGgtatgatatg ... gaacctttagGTTTATTTTGAGTCAGATGAAGTGAAAGCATGCATTGTAACTTGTGGAGGC
EST: AGAACAGCCGGCGGGGGGTTCACTTCCGTCGTGCTGGACCTCATCAGAAG GTTTATTTTGAGTCAGATGAAGTGAAAGCATGCATTGTAACTTGTGGAGGCEST: gi|88360390|gb|CI612109.1|CI612109
genomic: AGAACAGCCGGCGGGGGGTTCACTTCCGTCGTGCTGGACCTCGTCAGAAGgtatgatatg ... gaacctttagGTTTATTTTGAGTCAGATGAAGTGAAAGCATGCATTGTAACTTGTGGAGGC
EST: AGAACAGCCGGCGGGGGGTT-ACTTCCGTCGTGCTGGACCT-GTCAGAAG GTTTATTTTGAGTCAGATGAEST: gi|58668738|gb|CK057424.1|CK057424
genomic: AGAACAGCCGGCGGGGGGTTCACTTCCGTCGTGCTGGACCTCGTCAGAAGgtatgatatg ... gaacctttagGTTTATTTTGAGTCAGATGA
EST: AGAACAGCCGGCGGGGGGTTCACTTCCGTCGTGCTGGACCTCGTCAGAAG GTTTATTTTGAGTCAGATGAAGTGAAAGCATGCATTGTAACTTGTGGAGGCEST: gi|58606730|gb|CK034763.1|CK034763
genomic: AGAACAGCCGGCGGGGGGTTCACTTCCGTCGTGCTGGACCTCGTCAGAAGgtatgatatg ... gaacctttagGTTTATTTTGAGTCAGATGAAGTGAAAGCATGCATTGTAACTTGTGGAGGC
EST: AGAACAGCCGGCGGGGGGTTCACTTCCGTCGTGCTGGACCTCATCAGAAG GTTTATTTTGAGTCAGATGAEST: gi|58671614|gb|CK060300.1|CK060300
genomic: AGAACAGCCGGCGGGGGGTTCACTTCCGTCGTGCTGGACCTCGTCAGAAGgtatgatatg ... gaacctttagGTTTATTTTGAGTCAGATGA
EST: AGAACAGCCGGCGGGGGGTTCACTTCCGTCGTGCTGGACCTCGTCAGAAG GTTTATTTTGAGTCAGATGAAGTGAAAGCATGCATTGTAACTTGTGGAGGCEST: gi|58671004|gb|CK059690.1|CK059690
genomic: AGAACAGCCGGCGGGGGGTTCACTTCCGTCGTGCTGGACCTCGTCAGAAGgtatgatatg ... gaacctttagGTTTATTTTGAGTCAGATGAAGTGAAAGCATGCATTGTAACTTGTGGAGGC
EST: AGAACAGCCGGCGGGGGGTTCACTTCCGTCGTGCTGGACCTCGTCAGAAG GTTTATTTTGAGTCAGATGAAGTGAAAGCATGCATTGTAACTTGTGGAGGC
genomic: AGAACAGCCGGCGGGGGGTTCACTTCCGTCGTGCTGGACCTCGTCAGAAGgtatgatatg ... gaacctttagGTTTATTTTGAGTCAGATGAAGTGAAAGCATGCATTGTAACTTGTGGAGGC
tgaaactcatcacttgcgcgtgggctaacagaaacatttggacttgaacctttagGTTTATTTTGAGTCAGATGAAGTGAAAGCATGCATTGTAACTTGTGGAGGCCTTTGCCCTGGTCTTAACACTGTCATCAGAGAGCTCGTCTGTGGTTTGG
ggctaac putative branch site (score: 2)
ccttt putative PPT
aaacattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgatatgctgccccctcttttaactattgaaactcatcacttgcgcgtgggctaacagaaacatttggacttgaacctttagGTTTATTTTGAGTCAGATGAAGTGAAAGCATGCATTGTAACTTGTGGAGGCCTTTGCCCTGGTCTTAACACTGTCATCAGAGAGCTCGTCTGTGGTTTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT