1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaatggttacagctggcgtgtgtttatttctcatttacttttggtttcatgcactgatattctgctatattcattctactagGTGAGGATCCGCATTAGAAAGCTCTGCAAGCCTTTGGAAGAGGATGCTTTCAGACCAGTGCTGCACCATTACGATGGTCCAAAGTTTCGTCTTGAGCTCT
species | Oryza sativa |
transcript | LOC_Os05g41930.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CTGCATGGGAAGATAAGAAGTGTAAAGGTGAATCTAGATTCCCAGCGCAG GTGAGGATCCGCATTAGAAAGCTCTGCAAGCCTTTGGAAGAGGATGCTTTCEST: gi|33655764|gb|CF278378.1|CF278378
genomic: CTGCATGGGAAGATAAGAAGTGTAAAGGTGAATCTAGATTCCCAGCGCAGgtaatggtta ... attctactagGTGAGGATCCGCATTAGAAAGCTCTGCAAGCCTTTGGAAGAGGATGCTTTC
EST: GCATGGGAAGATAAGAAGTGTAAAGGTGAATCTAGATTCCCAGCGCAG GTGAGGATCCGCATTAGAAAGCTCTGCAAGCCTTTGGAAGAGGATGCTTTCEST: gi|29676071|gb|CB672346.1|CB672346
genomic: GCATGGGAAGATAAGAAGTGTAAAGGTGAATCTAGATTCCCAGCGCAGgtaatggtta ... attctactagGTGAGGATCCGCATTAGAAAGCTCTGCAAGCCTTTGGAAGAGGATGCTTTC
EST: CTGCATGGGAAGATAAGAAGTGTAAAGGTGAATCTAGATTCCCAGCGCAG GTGAGGATCCGCATTAGAAAGCTCTGCAAGCCGTTGGAAGAGGATGCTTTCEST: gi|89182537|gb|CI113906.1|CI113906
genomic: CTGCATGGGAAGATAAGAAGTGTAAAGGTGAATCTAGATTCCCAGCGCAGgtaatggtta ... attctactagGTGAGGATCCGCATTAGAAAGCTCTGCAAGCCTTTGGAAGAGGATGCTTTC
EST: AAGATAAGAAGTGTAAAGGTGAATCTAGATTCCCAGCGCAG GTGAGGATCCGCATTAGAAAGCTCTGCAAGCCTTTGGAAGAGGATGCTTTCEST: gi|218501446|gb|FG958594.1|FG958594
genomic: AAGATAAGAAGTGTAAAGGTGAATCTAGATTCCCAGCGCAGgtaatggtta ... attctactagGTGAGGATCCGCATTAGAAAGCTCTGCAAGCCTTTGGAAGAGGATGCTTTC
EST: CTGCATGGGAAGATAAGAAGTGTAAAGGTGAATCTAGATTCCCAGCGCAG GTGAGGAATC-GCATTAGAAAGCTCTGCAAGCCTTTGGAAGAGGATGEST: gi|58668957|gb|CK057643.1|CK057643
genomic: CTGCATGGGAAGATAAGAAGTGTAAAGGTGAATCTAGATTCCCAGCGCAGgtaatggtta ... attctactagGTGAGGA-TCCGCATTAGAAAGCTCTGCAAGCCTTTGGAAGAGGATG
EST: CTGCATGGGAAGATAAGAAGTGTAAAGGTGAATCTAGATTCCCAGCGCAG GTGAGGATCCGCATTAGAAAGCTCTGCAAGCCTTTGGAAEST: gi|38470564|gb|CF954695.1|CF954695
genomic: CTGCATGGGAAGATAAGAAGTGTAAAGGTGAATCTAGATTCCCAGCGCAGgtaatggtta ... attctactagGTGAGGATCCGCATTAGAAAGCTCTGCAAGCCTTTGGAA
EST: CTGCATGGGAAGATAAGAAGTGTAAAGGTGAATCTAGATTCCCAGCGCAG GTAAGGATCCGCATTAGAAAGCTCTGCAAGCCTTTGGAAGAGGATGCTTTCEST: gi|29687868|gb|CB684143.1|CB684143
genomic: CTGCATGGGAAGATAAGAAGTGTAAAGGTGAATCTAGATTCCCAGCGCAGgtaatggtta ... attctactagGTGAGGATCCGCATTAGAAAGCTCTGCAAGCCTTTGGAAGAGGATGCTTTC
EST: CTGCATGGGAAGATAAGAAGTGTAAAGGTGAATCTAGATTCCCAGCGCAG GTGAGGATCCGCATTAGAAAGCTCTGCAAGCCTTTGGAAGAGGATGCTTTCEST: gi|29676451|gb|CB672726.1|CB672726
genomic: CTGCATGGGAAGATAAGAAGTGTAAAGGTGAATCTAGATTCCCAGCGCAGgtaatggtta ... attctactagGTGAGGATCCGCATTAGAAAGCTCTGCAAGCCTTTGGAAGAGGATGCTTTC
EST: CTGCATGGGAAGATAAGAAGTGTAAAGGTGAATCTAGATTCCCAGCGCAG GTGAGGATCCGCATTAGAAAGCTCTGCAAGCCTTTGGAAGAGGATGCTTTCEST: gi|86415871|gb|CI029882.1|CI029882
genomic: CTGCATGGGAAGATAAGAAGTGTAAAGGTGAATCTAGATTCCCAGCGCAGgtaatggtta ... attctactagGTGAGGATCCGCATTAGAAAGCTCTGCAAGCCTTTGGAAGAGGATGCTTTC
EST: GATTCCCAGCGCAG GTGAGGATCCGCATTAGAAAGCTCTGCAAGCCTTTGGAAGAGGATGCTTTCEST: gi|218489639|gb|FG959075.1|FG959075
genomic: GATTCCCAGCGCAGgtaatggtta ... attctactagGTGAGGATCCGCATTAGAAAGCTCTGCAAGCCTTTGGAAGAGGATGCTTTC
EST: CTGCATGGGAAGATAAGAAGTGTAAAGGTGAATCTAGATTCCCAGCGCAG GTGAGGATCCGCATTAGAAAGCTCTGCAAGCCTTTGGAAGAGGATGCTTTCEST: gi|88993492|gb|CI110313.1|CI110313
genomic: CTGCATGGGAAGATAAGAAGTGTAAAGGTGAATCTAGATTCCCAGCGCAGgtaatggtta ... attctactagGTGAGGATCCGCATTAGAAAGCTCTGCAAGCCTTTGGAAGAGGATGCTTTC
EST: ATAAGAAGTGTAAAGGTGAATCTAGATTCCCAGCGCAG GTGAGGATCCGCATTAGAAAGCTCTGCAAGCCTTTGGAAGAGGATGCTTTCEST: gi|29636231|gb|CB641240.1|CB641240
genomic: ATAAGAAGTGTAAAGGTGAATCTAGATTCCCAGCGCAGgtaatggtta ... attctactagGTGAGGATCCGCATTAGAAAGCTCTGCAAGCCTTTGGAAGAGGATGCTTTC
EST: AGGTGAATCTAGATTCCCAGCGCAG GTGAGGATCCGCATTAGAAAGCTCTGCAAGCCTTTGGAAGAGGATGCTTTCEST: gi|87006984|gb|CI275292.1|CI275292
genomic: AGGTGAATCTAGATTCCCAGCGCAGgtaatggtta ... attctactagGTGAGGATCCGCATTAGAAAGCTCTGCAAGCCTTTGGAAGAGGATGCTTTC
EST: CTGCATGGGAAGATAAGAAGTGTAAAGGTGAATCTAGATTCCCAGCGCAG GTGAGGATCCGCATTAGAAAGCTCTGCAAGCCTTTGGAAGAGGATGCTTTCEST: gi|18388677|gb|BM421875.1|BM421875
genomic: CTGCATGGGAAGATAAGAAGTGTAAAGGTGAATCTAGATTCCCAGCGCAGgtaatggtta ... attctactagGTGAGGATCCGCATTAGAAAGCTCTGCAAGCCTTTGGAAGAGGATGCTTTC
EST: TGCATGGGAAGATAAGAAGGTGTAAAGGTGAATCTAGATTCCCAGCTCAG GTGAGGATCCGCATTAGAAAGCTCTTGCAAGCCTTTGGAAGAGGATGCTTTEST: gi|22307390|gb|BQ908612.1|BQ908612
genomic: TGCATGGGAAGATAAGAA-GTGTAAAGGTGAATCTAGATTCCCAGCGCAGgtaatggtta ... attctactagGTGAGGATCCGCATTAGAAAGCTC-TGCAAGCCTTTGGAAGAGGATGCTTT
EST: TGCATGGGAAGATAAGAAGTGTAAAGGGTGAATCTAGATTCCCAGCTCA- GTGAGGATCCGCATTAGAAAGCTCTGCAAGCCTTTGGAAGAGGATGCTTTCEST: gi|22307916|gb|BQ909138.1|BQ909138
genomic: TGCATGGGAAGATAAGAAGTGTAAA-GGTGAATCTAGATTCCCAGCGCAGgtaatggtta ... attctactagGTGAGGATCCGCATTAGAAAGCTCTGCAAGCCTTTGGAAGAGGATGCTTTC
EST: CTGCATGGGAAGATAAGAAGTGTAAAGGTGAATCTAGATTCCCAGCTCAG GTGAGGATCCGCATTAGAAAGCTCTGCAAGCCTTTGGAAGAGGATGCTTTCEST: gi|163928377|gb|EG712621.1|EG712621
genomic: CTGCATGGGAAGATAAGAAGTGTAAAGGTGAATCTAGATTCCCAGCGCAGgtaatggtta ... attctactagGTGAGGATCCGCATTAGAAAGCTCTGCAAGCCTTTGGAAGAGGATGCTTTC
EST: CTGCATGGGAAGATAAGAAGTGTAAAGGTGAATCTAGATTCCCAGCGCAG GTGAGGATCCGCATTEST: gi|88994584|gb|CI117736.1|CI117736
genomic: CTGCATGGGAAGATAAGAAGTGTAAAGGTGAATCTAGATTCCCAGCGCAGgtaatggtta ... attctactagGTGAGGATCCGCATT
EST: GATAAGAAGTGTAAAGGTGAATCTAGATTCCCAGCGCAG GTGAGGATCCGCATTAGAAAGCTCTGCAAGCCTTTGGAAGAGGATGCTTTCEST: gi|29669163|gb|CB665438.1|CB665438
genomic: GATAAGAAGTGTAAAGGTGAATCTAGATTCCCAGCGCAGgtaatggtta ... attctactagGTGAGGATCCGCATTAGAAAGCTCTGCAAGCCTTTGGAAGAGGATGCTTTC
EST: CTGCATGGGAAGATAAGAAGTGTAAAGGTGAATCTAGATTCCCAGCGCAG GTGAGGATCCGCATTAGAAAGCTCTGCAAGCCTTTGGAAGAGGATGCTTTCEST: gi|29667743|gb|CB664018.1|CB664018
genomic: CTGCATGGGAAGATAAGAAGTGTAAAGGTGAATCTAGATTCCCAGCGCAGgtaatggtta ... attctactagGTGAGGATCCGCATTAGAAAGCTCTGCAAGCCTTTGGAAGAGGATGCTTTC
EST: CTGCATGGGAAGATAAGAAGTGTAAAGGTGAATCTAGATTCCCAGCGCAG GTGAGGATCCGCATTAGAAAGCTCTGCAAGCCTTTGGAAGAGGATGCTTTCEST: gi|29676329|gb|CB672604.1|CB672604
genomic: CTGCATGGGAAGATAAGAAGTGTAAAGGTGAATCTAGATTCCCAGCGCAGgtaatggtta ... attctactagGTGAGGATCCGCATTAGAAAGCTCTGCAAGCCTTTGGAAGAGGATGCTTTC
EST: CTGCATGGGAAGATAAGAAGTGTAAAGGTGAATCTAGATTCCCAGCGCAG GTGAGGATCCGCATTAGAAAGCTCTGCAAGCCTTTGGAAGAGGATGCTTTCEST: gi|86823854|gb|CI258846.1|CI258846
genomic: CTGCATGGGAAGATAAGAAGTGTAAAGGTGAATCTAGATTCCCAGCGCAGgtaatggtta ... attctactagGTGAGGATCCGCATTAGAAAGCTCTGCAAGCCTTTGGAAGAGGATGCTTTC
EST: CTGCATGGGAAGATAAGAAGTGTAAAGGTGAATCTAGATTCCCAGCGCAG GTGAGGATCCGCATTAGAAAGCTCTGCAAGCCTTTGGAAGAGGATGCTTTCEST: gi|41882529|gb|BX927965.1|BX927965
genomic: CTGCATGGGAAGATAAGAAGTGTAAAGGTGAATCTAGATTCCCAGCGCAGgtaatggtta ... attctactagGTGAGGATCCGCATTAGAAAGCTCTGCAAGCCTTTGGAAGAGGATGCTTTC
EST: CTGCATGGGAAGATAAGAAGTGTAAAGGTGAATCTAGATTCCCAGCTCAG GTGAGGATCCGCATTAGAAAGCTCTGCAAGCCTTTGGAAGAGGATGCTTTCEST: gi|29675861|gb|CB672136.1|CB672136
genomic: CTGCATGGGAAGATAAGAAGTGTAAAGGTGAATCTAGATTCCCAGCGCAGgtaatggtta ... attctactagGTGAGGATCCGCATTAGAAAGCTCTGCAAGCCTTTGGAAGAGGATGCTTTC
EST: CTGCATGGGAAGATAAGAAGTGTAAAGGTGAATCTAGATTCCCAGCGCAG GTGAGGATCCGCATTAGAAAGCTCTGCAAGCCTTTGGAAGAGGATGCTTTCEST: gi|87015321|gb|CI275511.1|CI275511
genomic: CTGCATGGGAAGATAAGAAGTGTAAAGGTGAATCTAGATTCCCAGCGCAGgtaatggtta ... attctactagGTGAGGATCCGCATTAGAAAGCTCTGCAAGCCTTTGGAAGAGGATGCTTTC
EST: CTGCATGGGAAGATAAGAAGTGTAAAGGTGAATCTAGATTCCCAGCGCAG GTGAGGATCCGCATTAGAAAGCTCTGCAAGCCTTTGGAAGAGGATGCTTTCEST: gi|218502990|gb|FG954156.1|FG954156
genomic: CTGCATGGGAAGATAAGAAGTGTAAAGGTGAATCTAGATTCCCAGCGCAGgtaatggtta ... attctactagGTGAGGATCCGCATTAGAAAGCTCTGCAAGCCTTTGGAAGAGGATGCTTTC
EST: CTGCATGGGAAGATAAGAAGTGTAAAGGTGAATCTAGATTCCCAGCGCAG GTGAGGATCCG-ATTACAAAGCTCTGCAAGCCTTTGGAAGAGGATGCTEST: gi|88214724|gb|CI214573.1|CI214573
genomic: CTGCATGGGAAGATAAGAAGTGTAAAGGTGAATCTAGATTCCCAGCGCAGgtaatggtta ... attctactagGTGAGGATCCGCATTAGAAAGCTCTGCAAGCCTTTGGAAGAGGATGCT
EST: AGAAGTGTAAAGGTGAATCTAGATTCCCAGCGCAG GTGAGGATCCGCATTAGAAAGCTCTGCAAGCCTTTGGAAGAGGATGCTTTCEST: gi|29642637|gb|CB647644.1|CB647644
genomic: AGAAGTGTAAAGGTGAATCTAGATTCCCAGCGCAGgtaatggtta ... attctactagGTGAGGATCCGCATTAGAAAGCTCTGCAAGCCTTTGGAAGAGGATGCTTTC
EST: CTGCATGGGAAGATAAGAAGTGTAAAGGTGAATCTAGATTCCCAGCGCAG GTGAGGATCCGCATTAGAAAGCTCTGCAAGCCTTTGGAAGAGGATGCTTTCEST: gi|7134957|gb|AU082757.1|AU082757
genomic: CTGCATGGGAAGATAAGAAGTGTAAAGGTGAATCTAGATTCCCAGCGCAGgtaatggtta ... attctactagGTGAGGATCCGCATTAGAAAGCTCTGCAAGCCTTTGGAAGAGGATGCTTTC
EST: CTGCATGGGAAGATAAGAAGTGTAAAGGTGAATCTAGATTCCCAGCGCAG GTGAGGATCCGCATTAGAAAGCTCTGCAAGCCTTTGGAAGAGGATGCTTTCEST: gi|218500689|gb|FG944959.1|FG944959
genomic: CTGCATGGGAAGATAAGAAGTGTAAAGGTGAATCTAGATTCCCAGCGCAGgtaatggtta ... attctactagGTGAGGATCCGCATTAGAAAGCTCTGCAAGCCTTTGGAAGAGGATGCTTTC
EST: CTGCATGGGAAGATAAGAAGTGTAAAGGTGAATCTAGATTCCCAGCGCAG GTGAGGATCCGCATTAGAAAGCTCTGCAAGCCTTTGGAAGAGGATGCTTTCEST: gi|29617826|gb|CB622838.1|CB622838
genomic: CTGCATGGGAAGATAAGAAGTGTAAAGGTGAATCTAGATTCCCAGCGCAGgtaatggtta ... attctactagGTGAGGATCCGCATTAGAAAGCTCTGCAAGCCTTTGGAAGAGGATGCTTTC
EST: CTGCATGGGAAGATAAGAAGTGTAAAGGTGAATCTAGATTCCCAGCTCAG GTGAGGATCCGCATTAGAAAGCTCTGCAAGCCTTTGGAAGAGGATGCTTTCEST: gi|29642202|gb|CB647209.1|CB647209
genomic: CTGCATGGGAAGATAAGAAGTGTAAAGGTGAATCTAGATTCCCAGCGCAGgtaatggtta ... attctactagGTGAGGATCCGCATTAGAAAGCTCTGCAAGCCTTTGGAAGAGGATGCTTTC
EST: CTGCATGGGAAGATAAGAAGTGTAAAGGTGAATCTAGATTCCCAGCGCAG GTGAGGATCCGCATTAGAAAGCTCTGCAAGCCTTTGGAAGAGGATGCTTTCEST: gi|163928338|gb|EG714682.1|EG714682
genomic: CTGCATGGGAAGATAAGAAGTGTAAAGGTGAATCTAGATTCCCAGCGCAGgtaatggtta ... attctactagGTGAGGATCCGCATTAGAAAGCTCTGCAAGCCTTTGGAAGAGGATGCTTTC
EST: CTGCATGGGAAGATAAGAAGTGTAAAGGTGAATCTAGATTCCCAGCGCAG GTGAGGATCCGCATTAGAAAGCTCTGCAAGCCTTTGEST: gi|218481318|gb|FG953310.1|FG953310
genomic: CTGCATGGGAAGATAAGAAGTGTAAAGGTGAATCTAGATTCCCAGCGCAGgtaatggtta ... attctactagGTGAGGATCCGCATTAGAAAGCTCTGCAAGCCTTTG
EST: CTGCATGGGAAGATAAGAAGTGTAAAGGTGAATCTAGATTCCCAGCGCAG GTGAGGATCCGCATTAGAAAGCTCTGCAAGCCTTTGGAAGAGGATGCTTTCEST: gi|427037|gb|D23114.1|D23114
genomic: CTGCATGGGAAGATAAGAAGTGTAAAGGTGAATCTAGATTCCCAGCGCAGgtaatggtta ... attctactagGTGAGGATCCGCATTAGAAAGCTCTGCAAGCCTTTGGAAGAGGATGCTTTC
EST: AAAGGTGAATCTAGATTCCCAGCGCAG GTGAGGATCCGCATTAGAAAGCTCTGCAAGCCTTTGGAAGAGGATGCTTTCEST: gi|29657474|gb|CB653749.1|CB653749
genomic: AAAGGTGAATCTAGATTCCCAGCGCAGgtaatggtta ... attctactagGTGAGGATCCGCATTAGAAAGCTCTGCAAGCCTTTGGAAGAGGATGCTTTC
EST: CTGCATGGGAAGATAAGAAGTGTAAAGGTGAATCTAGATTCCCAGCGCAG GTGAGGATCCGCATTAGAAAGCTCTGCAAGCCTTTGGAAGAGGATGCTTTCEST: gi|88837795|gb|CI079155.1|CI079155
genomic: CTGCATGGGAAGATAAGAAGTGTAAAGGTGAATCTAGATTCCCAGCGCAGgtaatggtta ... attctactagGTGAGGATCCGCATTAGAAAGCTCTGCAAGCCTTTGGAAGAGGATGCTTTC
EST: CTGCATGGGAAGATAAGAAGTGTAAAGGTGAATCTAGATTCCCAGCGCAG GTGAGGATCCGCATTAGAAAGCTCTGCAAGCCTTTGGAAGAGGATGCTTTCEST: gi|86500670|gb|CI143303.1|CI143303
genomic: CTGCATGGGAAGATAAGAAGTGTAAAGGTGAATCTAGATTCCCAGCGCAGgtaatggtta ... attctactagGTGAGGATCCGCATTAGAAAGCTCTGCAAGCCTTTGGAAGAGGATGCTTTC
EST: TGCATGGGAAGATAAGAAGTGTAAAGGTGAATCTAGATTCCCAGCGCCAG GTGAGGATCCGCATTAGAAAGCTCTGCAAGCCTTTGGAAGAGGATGCTTTEST: gi|29618262|gb|CB623274.1|CB623274
genomic: TGCATGGGAAGATAAGAAGTGTAAAGGTGAATCTAGATTCCCAGCG-CAGgtaatggtta ... attctactagGTGAGGATCCGCATTAGAAAGCTCTGCAAGCCTTTGGAAGAGGATGCTTT
EST: CTGCATGGGAAGATAAGAAGTGTAAAGGTGAATCTAGATTCCCAGCTCAG GTGAGGATCCGCATTAGAAAGCTCTGCAAGCCTTTGGAAGAGGATGCTTTCEST: gi|218478865|gb|FG954592.1|FG954592
genomic: CTGCATGGGAAGATAAGAAGTGTAAAGGTGAATCTAGATTCCCAGCGCAGgtaatggtta ... attctactagGTGAGGATCCGCATTAGAAAGCTCTGCAAGCCTTTGGAAGAGGATGCTTTC
EST: TGGGAAGATAAGAAGTGT-AAGGTGAATCTAGATTCCCAGCGCAG GTGAGGATCCGCATTAGAAAGCTCTGCAAGCCTTTGTGAAGAGGATGCTTTEST: gi|86604111|gb|CI114885.1|CI114885
genomic: TGGGAAGATAAGAAGTGTAAAGGTGAATCTAGATTCCCAGCGCAGgtaatggtta ... attctactagGTGAGGATCCGCATTAGAAAGCTCTGCAAGCCTTTG-GAAGAGGATGCTTT
EST: AGATAAGAAGTGTAAAGGTGAATCTAGATTCCCAGCGCAG GTGAGGATCCGCATTAGAAAGCTCTGCAAGCCTTTGGAAGAGGATGCTTTCEST: gi|86831539|gb|CI299597.1|CI299597
genomic: AGATAAGAAGTGTAAAGGTGAATCTAGATTCCCAGCGCAGgtaatggtta ... attctactagGTGAGGATCCGCATTAGAAAGCTCTGCAAGCCTTTGGAAGAGGATGCTTTC
EST: CTGCATGGGAAGATAAGAAGTGTAAAGGTGAATCTAGATTCCCAGCGCAG GTGAGGATCCGCATTAGAAAGCTCTGCAAGCCTTTGGAAGAGGATGCTTTCEST: gi|88964453|gb|CI055149.1|CI055149
genomic: CTGCATGGGAAGATAAGAAGTGTAAAGGTGAATCTAGATTCCCAGCGCAGgtaatggtta ... attctactagGTGAGGATCCGCATTAGAAAGCTCTGCAAGCCTTTGGAAGAGGATGCTTTC
EST: GCATGGGAAGATAAGAAGTGTAAAGGTGAATCTAGATTCCCAGCGCAG GTGAGGATCCGCATTAGAAAGCTCTGCAAGCCTTTGGAAGAGGATGCTTTCEST: gi|218497317|gb|FG959991.1|FG959991
genomic: GCATGGGAAGATAAGAAGTGTAAAGGTGAATCTAGATTCCCAGCGCAGgtaatggtta ... attctactagGTGAGGATCCGCATTAGAAAGCTCTGCAAGCCTTTGGAAGAGGATGCTTTC
EST: GAAGATAAGAAGTGTAAAGGTGAATCTAGATTCCCAGCGCAG GTGAGGATCCGCATTAGAAAGCTCTGCAAGCCTTTGGAAGAGGATGCTTTCEST: gi|163922876|gb|EG712727.1|EG712727
genomic: GAAGATAAGAAGTGTAAAGGTGAATCTAGATTCCCAGCGCAGgtaatggtta ... attctactagGTGAGGATCCGCATTAGAAAGCTCTGCAAGCCTTTGGAAGAGGATGCTTTC
EST: CTGCATGGGAAGATAAGAAGTGTAAAGGTGAATCTAGATTCCCAGCGCAG GTGAGGATCCGCATTAAAAAGCTCTGCAAGCCTTTGGAAGAGGATGCTTTCEST: gi|86430069|gb|CI082492.1|CI082492
genomic: CTGCATGGGAAGATAAGAAGTGTAAAGGTGAATCTAGATTCCCAGCGCAGgtaatggtta ... attctactagGTGAGGATCCGCATTAGAAAGCTCTGCAAGCCTTTGGAAGAGGATGCTTTC
EST: AGATTCCCAGCGCAG GTGAGGATCCGCATTAGAAAGCTCTGCAAGCCTTTGGAAGAGGATGCTTTCEST: gi|218479007|gb|FG957145.1|FG957145
genomic: AGATTCCCAGCGCAGgtaatggtta ... attctactagGTGAGGATCCGCATTAGAAAGCTCTGCAAGCCTTTGGAAGAGGATGCTTTC
EST: CTGCATGGGAAGATATGAAGTGTAAAGGTGAATCTAGATTCCCAGCGCAG GTGAGGATCCGCATTAGAAAGCTCTGCAAGEST: gi|88828537|gb|CI073407.1|CI073407
genomic: CTGCATGGGAAGATAAGAAGTGTAAAGGTGAATCTAGATTCCCAGCGCAGgtaatggtta ... attctactagGTGAGGATCCGCATTAGAAAGCTCTGCAAG
EST: CTGCATGGGAAGATAAGAAGTGTAAAGGTGAATCTAGATTCCCAGCGCAG GTGAGGATCCGCATTAGAAAGCTCTGCAAGCCTTTGGAAGAGGATGCTTTCEST: gi|88220940|gb|CI220748.1|CI220748
genomic: CTGCATGGGAAGATAAGAAGTGTAAAGGTGAATCTAGATTCCCAGCGCAGgtaatggtta ... attctactagGTGAGGATCCGCATTAGAAAGCTCTGCAAGCCTTTGGAAGAGGATGCTTTC
EST: GTGAATCTAGATTCCCAGCGCAG GTGAGGATCCGCATTAGAAAGCTCTGCAAGCCTTTGGAAGAGGATGCTTTCEST: gi|88964185|gb|CI045378.1|CI045378
genomic: GTGAATCTAGATTCCCAGCGCAGgtaatggtta ... attctactagGTGAGGATCCGCATTAGAAAGCTCTGCAAGCCTTTGGAAGAGGATGCTTTC
EST: ATGGGAAGATAAGAAGTGTAAAGGTGAATCTAGATTCCCAGCGCAG GTGAGGATCCGCATTAGAAAGCTCTGCAAGCCTTTGGAAGAGGATGCTTTCEST: gi|29675022|gb|CB671297.1|CB671297
genomic: ATGGGAAGATAAGAAGTGTAAAGGTGAATCTAGATTCCCAGCGCAGgtaatggtta ... attctactagGTGAGGATCCGCATTAGAAAGCTCTGCAAGCCTTTGGAAGAGGATGCTTTC
EST: CTGCATGGGAAGATAAGAAGTGTAAAGGTGAATCTAGATTCCCAGCGCAG GTGAGGATCCGCATTAGAAAGCTCTGCAAGCCTTTGGAAGAGGATGCTTTCEST: gi|88219581|gb|CI219141.1|CI219141
genomic: CTGCATGGGAAGATAAGAAGTGTAAAGGTGAATCTAGATTCCCAGCGCAGgtaatggtta ... attctactagGTGAGGATCCGCATTAGAAAGCTCTGCAAGCCTTTGGAAGAGGATGCTTTC
EST: AAGATAAGAAGTGTAAAGGTGAATCTAGATTCCCAGCGCAG GTGAGGATCCGCATTAGAAAGCTCTGCAAGCCTTTGGAAGAGGATGCTTTCEST: gi|29636278|gb|CB641287.1|CB641287
genomic: AAGATAAGAAGTGTAAAGGTGAATCTAGATTCCCAGCGCAGgtaatggtta ... attctactagGTGAGGATCCGCATTAGAAAGCTCTGCAAGCCTTTGGAAGAGGATGCTTTC
EST: CTGCATGGGAAGATAAGAAGTGTAAAGGTGAATCTAGATTCCCAGCGCAG GTGAGGATCCGCATTAGAAAGCTCTGCAAGCCTTTGGAAGAGGATGCTTTC
genomic: CTGCATGGGAAGATAAGAAGTGTAAAGGTGAATCTAGATTCCCAGCGCAGgtaatggtta ... attctactagGTGAGGATCCGCATTAGAAAGCTCTGCAAGCCTTTGGAAGAGGATGCTTTC
ttctcatttacttttggtttcatgcactgatattctgctatattcattctactagGTGAGGATCCGCATTAGAAAGCTCTGCAAGCCTTTGGAAGAGGATGCTTTCAGACCAGTGCTGCACCATTACGATGGTCCAAAGTTTCGTCTTGAGCTCT
cactgat putative branch site (score: 3)
ttcattct putative PPT
atttactttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatggttacagctggcgtgtgtttatttctcatttacttttggtttcatgcactgatattctgctatattcattctactagGTGAGGATCCGCATTAGAAAGCTCTGCAAGCCTTTGGAAGAGGATGCTTTCAGACCAGTGCTGCACCATTACGATGGTCCAAAGTTTCGTCTTGAGCTCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC