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gttggtcagattacctttgttgctgttcctgctagtactaatatatgtgtacaggcttaagttctttgcacatttcacctgcagGGAGCTTGCCACTGACTCCATTCTCCAGGCAATACGAGATGAATCAATGTATGATCCACGGGAGAGGATTGAGATGTCTCAGCGCCAGTGTCTTTACCGA
species | Oryza sativa |
transcript | LOC_Os05g41590.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GTCGAGCTGTGCCCAATACTAAAAACACTTTATAAAATCCTAATCAAGAG GGAGCTTGCCACTGACTCCATTCTCCAGGCAATACGAGATGAATCAATGTAEST: gi|88245329|gb|CI245178.1|CI245178
genomic: GTCGAGCTGTGCCCAATACTAAAAACACTTTATAAAATCCTAATCAAGAGgttggtcaga ... tcacctgcagGGAGCTTGCCACTGACTCCATTCTCCAGGCAATACGAGATGAATCAATGTA
EST: GTCGAGCTGTGCCCAATACTAAAAACACTTTATAAAATCCTAATCAAGAG GGAGCTTGCCACTGACTCCATTCTCCAGGCAATACGAGATGAATCAATGTAEST: gi|88248710|gb|CI248559.1|CI248559
genomic: GTCGAGCTGTGCCCAATACTAAAAACACTTTATAAAATCCTAATCAAGAGgttggtcaga ... tcacctgcagGGAGCTTGCCACTGACTCCATTCTCCAGGCAATACGAGATGAATCAATGTA
EST: GTCGAGCTGTGCCCAATACTAAAAACACTTTATAAAATCCTAATCAAGAG GGAGCTTGCCACTGACTCCATTCTCCAGGCAATACGAGATGAATCAATGTAEST: gi|29669484|gb|CB665759.1|CB665759
genomic: GTCGAGCTGTGCCCAATACTAAAAACACTTTATAAAATCCTAATCAAGAGgttggtcaga ... tcacctgcagGGAGCTTGCCACTGACTCCATTCTCCAGGCAATACGAGATGAATCAATGTA
EST: GTCGAGCTGTGCCCAATACTAAAAACACTTTATAAAATCCTAATCAAGAG GGAGCTTGCCACTGACTCCATTCTCCAGGCAATACGAGATGAATCAATGTA
genomic: GTCGAGCTGTGCCCAATACTAAAAACACTTTATAAAATCCTAATCAAGAGgttggtcaga ... tcacctgcagGGAGCTTGCCACTGACTCCATTCTCCAGGCAATACGAGATGAATCAATGTA
tgctagtactaatatatgtgtacaggcttaagttctttgcacatttcacctgcagGGAGCTTGCCACTGACTCCATTCTCCAGGCAATACGAGATGAATCAATGTATGATCCACGGGAGAGGATTGAGATGTCTCAGCGCCAGTGTCTTTACCGA
tactaat putative branch site (score: 5)
tttcacct putative PPT
tactaatatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttggtcagattacctttgttgctgttcctgctagtactaatatatgtgtacaggcttaagttctttgcacatttcacctgcagGGAGCTTGCCACTGACTCCATTCTCCAGGCAATACGAGATGAATCAATGTATGATCCACGGGAGAGGATTGAGATGTCTCAGCGCCAGTGTCTTTACCGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG