1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gttcgtcgctaccgacatcacttacatatattttcctctatggcaccctcagaagtactgaatatatttgcctctttccctgtttcagGTGACTCGGACATCATCAACACAACCCCTGCCTCCCAGTGAAGAAGTTTTTACCTATTTAGTTGAGATGTAGGGTTCAGACGTGCTTACATGGCCAATGG
species | Oryza sativa |
transcript | LOC_Os05g41110.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TGCCTGCGGCAAGTACTACCGGGTGTGCTGCCTCAGCATCATCGACCCTG GTGACTCGGACATCATCAACACAACCCCTGCCTCCCAGTGAAGAAGTTTTTEST: gi|30228744|gb|CB966634.1|CB966634
genomic: TGCCTGCGGCAAGTACTACCGGGTGTGCTGCCTCAGCATCATCGACCCTGgttcgtcgct ... cctgtttcagGTGACTCGGACATCATCAACACAACCCCTGCCTCCCAGTGAAGAAGTTTTT
EST: TGCCTGCGGCAAGTACTACCGGGTGTGCTGCCTCAGCATCATCGACCCTG GTGACTCGGACATCATCAACACAACCCCTGCCTCCCAGTGAAGAAGTTTTTEST: gi|88281712|gb|CI403108.1|CI403108
genomic: TGCCTGCGGCAAGTACTACCGGGTGTGCTGCCTCAGCATCATCGACCCTGgttcgtcgct ... cctgtttcagGTGACTCGGACATCATCAACACAACCCCTGCCTCCCAGTGAAGAAGTTTTT
EST: TGCCTGCGGCAAGTACTACCGGGTGTGCTGCCTCAGCATCATCGACCCTG GTGACTCGGACATCATCAACACAACCCCTGCCTCCCAGTGAAGAAGTTTTTEST: gi|14981077|gb|BI305768.1|BI305768
genomic: TGCCTGCGGCAAGTACTACCGGGTGTGCTGCCTCAGCATCATCGACCCTGgttcgtcgct ... cctgtttcagGTGACTCGGACATCATCAACACAACCCCTGCCTCCCAGTGAAGAAGTTTTT
EST: TGCCTGCGGCAAGTACTACCGGGTGTGCTGCCTCAGCATCATCGACCCTG GTGACTCGGACATCATCAACACAACCCCTGCCTCCCAGTGAAGAAGTTTTTEST: gi|25797182|gb|CA753143.1|CA753143
genomic: TGCCTGCGGCAAGTACTACCGGGTGTGCTGCCTCAGCATCATCGACCCTGgttcgtcgct ... cctgtttcagGTGACTCGGACATCATCAACACAACCCCTGCCTCCCAGTGAAGAAGTTTTT
EST: TGCCTGCGGCAAGTACTACCGGGTGTGCTGCCTCAGCATCATCGACCCTG GTGACTCGGACATCATCAACACAACCCCTGCCTCCCAGTGAAGAAGTTTTTEST: gi|27578251|gb|CB000946.1|CB000946
genomic: TGCCTGCGGCAAGTACTACCGGGTGTGCTGCCTCAGCATCATCGACCCTGgttcgtcgct ... cctgtttcagGTGACTCGGACATCATCAACACAACCCCTGCCTCCCAGTGAAGAAGTTTTT
EST: TGCCTGCGGCAAGTACTACCGGGTGTGCTGCCTCAGCATCATCGACCCTG GTGACTCGGACATCATCAACACAACCCCTGCCTCCCAGTGAAGAAGTTTTTEST: gi|30228625|gb|CB966515.1|CB966515
genomic: TGCCTGCGGCAAGTACTACCGGGTGTGCTGCCTCAGCATCATCGACCCTGgttcgtcgct ... cctgtttcagGTGACTCGGACATCATCAACACAACCCCTGCCTCCCAGTGAAGAAGTTTTT
EST: TGCCTGCGGCAAGTACTACCGGGTGTGCTGCCTCAGCATCATCGACCCTG GTGACTCGGACATCATCAACACAACCCCTGCCTCCCAGTGAAGAAGTTTTTEST: gi|87025758|gb|CI282335.1|CI282335
genomic: TGCCTGCGGCAAGTACTACCGGGTGTGCTGCCTCAGCATCATCGACCCTGgttcgtcgct ... cctgtttcagGTGACTCGGACATCATCAACACAACCCCTGCCTCCCAGTGAAGAAGTTTTT
EST: TGCCTGCGGCAAGTACTACCGGGTGTGCTGCCTCAGCATCATCGACCCTG GTGACTCGGACATCATCAACACAACCCCTGCCTCCCAGTGAAGAAGTTTTGEST: gi|87023003|gb|CI280020.1|CI280020
genomic: TGCCTGCGGCAAGTACTACCGGGTGTGCTGCCTCAGCATCATCGACCCTGgttcgtcgct ... cctgtttcagGTGACTCGGACATCATCAACACAACCCCTGCCTCCCAGTGAAGAAGTTTTT
EST: TGCCTGCGGCAAGTACTACCGGGTGTGCTGCCTCAGCATCATCGACCCTG GTGACTCGGACATCATCAACACAACCCCTGCCTCCCAGTGAAGAAGTTTTTEST: gi|58594776|gb|CF993084.1|CF993084
genomic: TGCCTGCGGCAAGTACTACCGGGTGTGCTGCCTCAGCATCATCGACCCTGgttcgtcgct ... cctgtttcagGTGACTCGGACATCATCAACACAACCCCTGCCTCCCAGTGAAGAAGTTTTT
EST: TGCCTGCGGCAAGTACTACCGGGTGTGCTGCCTCAGCATCATCGACCCTG GTGACTCGGACATCATCAACACAACCCCTGCCTCCCAGTGAAGAAGTTTTTEST: gi|87032220|gb|CI262002.1|CI262002
genomic: TGCCTGCGGCAAGTACTACCGGGTGTGCTGCCTCAGCATCATCGACCCTGgttcgtcgct ... cctgtttcagGTGACTCGGACATCATCAACACAACCCCTGCCTCCCAGTGAAGAAGTTTTT
EST: TGCCTGCGGCAAGTACTACCGGGTGTGCTGCCTCAGCATCATCGACCCTG GTGACTCGGACATCATCAACACAACCCCTGCCTCCCAGTGAAGAAGTTTTTEST: gi|86593179|gb|CI255641.1|CI255641
genomic: TGCCTGCGGCAAGTACTACCGGGTGTGCTGCCTCAGCATCATCGACCCTGgttcgtcgct ... cctgtttcagGTGACTCGGACATCATCAACACAACCCCTGCCTCCCAGTGAAGAAGTTTTT
EST: TGCCTGCGGCAAGTACTACCGGGTGTGCTGCCTCAGCATCATCGACCCTG GTGACTCGGACATCATCAACACAACCCCTGCCTCCCAGTGAAGAAGTTTTTEST: gi|53553193|gb|CO435745.1|CO435745
genomic: TGCCTGCGGCAAGTACTACCGGGTGTGCTGCCTCAGCATCATCGACCCTGgttcgtcgct ... cctgtttcagGTGACTCGGACATCATCAACACAACCCCTGCCTCCCAGTGAAGAAGTTTTT
EST: TGCCTGCGGCAAGTACTACCGGGTGTGCTGCCTCAGCATCATCGACCCTG GTGACTCGGACATCATCAACACAACCCCTGCCTCCCAGTGAAGAAGTTTTTEST: gi|88995949|gb|CI037240.1|CI037240
genomic: TGCCTGCGGCAAGTACTACCGGGTGTGCTGCCTCAGCATCATCGACCCTGgttcgtcgct ... cctgtttcagGTGACTCGGACATCATCAACACAACCCCTGCCTCCCAGTGAAGAAGTTTTT
EST: TGCCTGCGGCAAGTACTACCGGGTGTGCTGCCTCAGCATCATCGACCCTG GTGACTCGGACATCATCAACACAACCCCTGCCTCCCAGTGAAGAAGTTTTTEST: gi|29686201|gb|CB682476.1|CB682476
genomic: TGCCTGCGGCAAGTACTACCGGGTGTGCTGCCTCAGCATCATCGACCCTGgttcgtcgct ... cctgtttcagGTGACTCGGACATCATCAACACAACCCCTGCCTCCCAGTGAAGAAGTTTTT
EST: TGCCTGCGGCAAGTACTACCGGGTGTGCTGCCTCAGCATCATCGACCCTG GTGACTCGGACATCATCAACACAACCCCTGCCTCCCAGTGAAGAAGTTTTTEST: gi|86530215|gb|CI170421.1|CI170421
genomic: TGCCTGCGGCAAGTACTACCGGGTGTGCTGCCTCAGCATCATCGACCCTGgttcgtcgct ... cctgtttcagGTGACTCGGACATCATCAACACAACCCCTGCCTCCCAGTGAAGAAGTTTTT
EST: TGCCTGCGGCAAGTACTACCGGGTGTGCTGCCTCAGCATCATCGACCCTG GTGACTCGGACATCATCAACACAACCCCTGCCTCCCAGTGAAGAAGTTTTTEST: gi|58031073|gb|CX728616.1|CX728616
genomic: TGCCTGCGGCAAGTACTACCGGGTGTGCTGCCTCAGCATCATCGACCCTGgttcgtcgct ... cctgtttcagGTGACTCGGACATCATCAACACAACCCCTGCCTCCCAGTGAAGAAGTTTTT
EST: TGCCTGCGGCAAGTACTACCGGGTGTGCTGCCTCAGCATCATCGACCCTG GTGACTCGGACATCATCAACACAACCCCTGCCTCCCAGTGAAGAAGTTTTTEST: gi|87011660|gb|CI281362.1|CI281362
genomic: TGCCTGCGGCAAGTACTACCGGGTGTGCTGCCTCAGCATCATCGACCCTGgttcgtcgct ... cctgtttcagGTGACTCGGACATCATCAACACAACCCCTGCCTCCCAGTGAAGAAGTTTTT
EST: TGCCTGCGGCAAGTACTACCGGGTGTGCTGCCTCAGCATCATCGACCCTG GTGACTCGGACATCATCAACACAACCCCTGCCTCCCAGTGAAGAAGTTTTTEST: gi|86532355|gb|CI172561.1|CI172561
genomic: TGCCTGCGGCAAGTACTACCGGGTGTGCTGCCTCAGCATCATCGACCCTGgttcgtcgct ... cctgtttcagGTGACTCGGACATCATCAACACAACCCCTGCCTCCCAGTGAAGAAGTTTTT
EST: TGCCTGCGGCAAGTACTACCGGGTGTGCTGCCTCAGCATCATCGACCCTG GTGACTCGGACATCATCAACACAACCCCTGCCTCCCAGTGAAGAAGTTTTTEST: gi|88241578|gb|CI241427.1|CI241427
genomic: TGCCTGCGGCAAGTACTACCGGGTGTGCTGCCTCAGCATCATCGACCCTGgttcgtcgct ... cctgtttcagGTGACTCGGACATCATCAACACAACCCCTGCCTCCCAGTGAAGAAGTTTTT
EST: TGCCTGCGGCAAGTACTACCGGGTGTGCTGCCTCAGCATCATCGACCCTG GTGACTCGGACATCATCAACACAACCCCTGCCTCCCAGTGAAGAAGTTTTTEST: gi|86417527|gb|CI031736.1|CI031736
genomic: TGCCTGCGGCAAGTACTACCGGGTGTGCTGCCTCAGCATCATCGACCCTGgttcgtcgct ... cctgtttcagGTGACTCGGACATCATCAACACAACCCCTGCCTCCCAGTGAAGAAGTTTTT
EST: TGCCTGCGGCAAGTACTACCGGGTGTGCTGCCTCAGCATCATCGACCCTG GTGACTCGGACATCATCAACACAACCCCTGCCTCCCAGTGAAGAAGTTTTTEST: gi|88547996|gb|CI478330.1|CI478330
genomic: TGCCTGCGGCAAGTACTACCGGGTGTGCTGCCTCAGCATCATCGACCCTGgttcgtcgct ... cctgtttcagGTGACTCGGACATCATCAACACAACCCCTGCCTCCCAGTGAAGAAGTTTTT
EST: TGCCTGCGGCAAGTACTACCGGGTGTGCTGCCTCAGCATCATCGACCCTG GTGACTCGGACATCATCAACACAACCCCTGCCTCCCAGTGAAGAAGTTTTTEST: gi|88400326|gb|CI591016.1|CI591016
genomic: TGCCTGCGGCAAGTACTACCGGGTGTGCTGCCTCAGCATCATCGACCCTGgttcgtcgct ... cctgtttcagGTGACTCGGACATCATCAACACAACCCCTGCCTCCCAGTGAAGAAGTTTTT
EST: TGCCTGCGGCAAGTACTACCGGGTGTGCTGCCTCAGCATCATCGACCCTG GTGACTCGGACATCATCAACACAACCCCTGGCTCC-AGTGAAGAEST: gi|86599456|gb|CI251414.1|CI251414
genomic: TGCCTGCGGCAAGTACTACCGGGTGTGCTGCCTCAGCATCATCGACCCTGgttcgtcgct ... cctgtttcagGTGACTCGGACATCATCAACACAACCCCTGCCTCCCAGTGAAGA
EST: TGCCTGCGGCAAGTACTACCGGGTGTGCTGCCTCAGCATCATCGACCCTG GTGACTCGGACATCATCAACACAACCCCTGCCTCCCAGTGAAGAAGTTTTTEST: gi|88556598|gb|CI486936.1|CI486936
genomic: TGCCTGCGGCAAGTACTACCGGGTGTGCTGCCTCAGCATCATCGACCCTGgttcgtcgct ... cctgtttcagGTGACTCGGACATCATCAACACAACCCCTGCCTCCCAGTGAAGAAGTTTTT
EST: TGCCTGCGGCAAGTACTACCGGGTGTGCTGCCTCAGCATCATCGACCCTG GTGACTCGGACATCATCAACACAACCCCTGCCTCCCAGTGAAGAAGTTTTTEST: gi|86533322|gb|CI173528.1|CI173528
genomic: TGCCTGCGGCAAGTACTACCGGGTGTGCTGCCTCAGCATCATCGACCCTGgttcgtcgct ... cctgtttcagGTGACTCGGACATCATCAACACAACCCCTGCCTCCCAGTGAAGAAGTTTTT
EST: TGCCTGCGGCAAGTACTACCGGGTGTGCTGCCTCAGCATCATCGACCCTG GTGACTCGGACATCATCAACACAACCCCTGCCTCCCAGTGAAGAAGTTTTTEST: gi|55410942|gb|CV723318.1|CV723318
genomic: TGCCTGCGGCAAGTACTACCGGGTGTGCTGCCTCAGCATCATCGACCCTGgttcgtcgct ... cctgtttcagGTGACTCGGACATCATCAACACAACCCCTGCCTCCCAGTGAAGAAGTTTTT
EST: TGCCTGCGGCAAGTACTACCGGGTGTGCTGCCTCAGCATCATCGACCCTG GTGACTCGGACATCATCAACACAACCCCTGCCTCCCAGTGAAGAAGTTTTTEST: gi|86416886|gb|CI030897.1|CI030897
genomic: TGCCTGCGGCAAGTACTACCGGGTGTGCTGCCTCAGCATCATCGACCCTGgttcgtcgct ... cctgtttcagGTGACTCGGACATCATCAACACAACCCCTGCCTCCCAGTGAAGAAGTTTTT
EST: TGCCTGCGGCAAGTACTACCGGGTGTGCTGCCTCAGCATCATCGACCCTG GTGACTCGGACATCATCAACACAACCCCTGCCTCCCAGTGAAGAAGTTTTTEST: gi|86835219|gb|CI346694.1|CI346694
genomic: TGCCTGCGGCAAGTACTACCGGGTGTGCTGCCTCAGCATCATCGACCCTGgttcgtcgct ... cctgtttcagGTGACTCGGACATCATCAACACAACCCCTGCCTCCCAGTGAAGAAGTTTTT
EST: TGCCTGCGGCAAGTACTACCGGGTGTGCTGCCTCAGCATCATCGACCCTG GTGACTCGGACATCATCAACACAACCCCTGCCTCCCAGTGAAGAAGTTTTTEST: gi|86529357|gb|CI169563.1|CI169563
genomic: TGCCTGCGGCAAGTACTACCGGGTGTGCTGCCTCAGCATCATCGACCCTGgttcgtcgct ... cctgtttcagGTGACTCGGACATCATCAACACAACCCCTGCCTCCCAGTGAAGAAGTTTTT
EST: TGCCTGCGGCAAGTACTACCGGGTGTGCTGCCTCAGCATCATCGACCCTG GTGACTCGGACATCATCAACACAACCCCTGCCTCCCAGTGAAGAAGTTTTTEST: gi|88991955|gb|CI035093.1|CI035093
genomic: TGCCTGCGGCAAGTACTACCGGGTGTGCTGCCTCAGCATCATCGACCCTGgttcgtcgct ... cctgtttcagGTGACTCGGACATCATCAACACAACCCCTGCCTCCCAGTGAAGAAGTTTTT
EST: TGCCTGCGGCAAGTACTACCGGGTGTGCTGCCTCAGCATCATCGACCCTG GTGACTCGGACATCATCAACACAACCCCTGCCTCCCAGTGAAGAAGTTTTT
genomic: TGCCTGCGGCAAGTACTACCGGGTGTGCTGCCTCAGCATCATCGACCCTGgttcgtcgct ... cctgtttcagGTGACTCGGACATCATCAACACAACCCCTGCCTCCCAGTGAAGAAGTTTTT
tcctctatggcaccctcagaagtactgaatatatttgcctctttccctgtttcagGTGACTCGGACATCATCAACACAACCCCTGCCTCCCAGTGAAGAAGTTTTTACCTATTTAGTTGAGATGTAGGGTTCAGACGTGCTTACATGGCCAATGG
tatttgcctctttccc CT-rich tract
tactgaatatattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttcgtcgctaccgacatcacttacatatattttcctctatggcaccctcagaagtactgaatatatttgcctctttccctgtttcagGTGACTCGGACATCATCAACACAACCCCTGCCTCCCAGTGAAGAAGTTTTTACCTATTTAGTTGAGATGTAGGGTTCAGACGTGCTTACATGGCCAATGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG