Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atgctcaattccttgtatatatgtacagttagtcatgctatgtattgcttccgatcagataaattctgtttacaccctttcccaattttctgttttttagGATATCCATGCTGAAGCTGTCAAGAAGAGGCGCCGCACCACCAAGAAGCCATACTCTAGGTCAATTGTTGGTGCTTCGTTGGAAGTCATCCAAAAGAAGA

Basic information

species Oryza sativa
transcript LOC_Os05g40820.3
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os05g40820.3 (Oryza sativa), 3'ss of exon 4
lower sequence: GRMZM2G110328_T03 (Zea mays), 3'ss of exon 4
atgctcaattccttgtatatatgtacagttagtcatgctatg--tattgcttc-cgatcagataaattctgtttacaccctttcccaattttctgttttttagGATATCCATGCTGAAGCTGTCAAGAAGAGGCGCCGCACCACCAAGAAGCCATACTCTAGGTCAATTGTTGGTGCTTCGTTGGAAGTCATCCAAAAGAAGA
       | |   | | |  |   ||| ||| ||  || |    ||||    | | |  ||   |   |  ||||||    ||  | |||| |||| | | |||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| ||||| ||||| ||||||||  | || || ||||| |||||||
-catctgaataaatctttgcaacaacaattactctcgccacacttattatggcgctaaaagtctagaaccttttacatgtattagccattt-ctgtctgt-agGATATCCATGCTGAGGCTGTCAAGAAGAGGCGCCGCGCCACCAAGAAGCCATACTCGAGGTCCATTGTGGGTGCTTCCCTAGAGGTGATCCAGAAGAAGA

upper sequence: LOC_Os05g40820.3 (Oryza sativa), 3'ss of exon 4
lower sequence: GRMZM2G074898_T03 (Zea mays), 3'ss of exon 4
atgctcaattccttgtatatatgtacagttagtcatgctatgtattgcttccgatcagataaattctgtttacaccctttccca-attttctgttttt---tagGATATCCATGCTGAAGCTGTCAAGAAGAGGCGCCGCACCACCAAGAAGCCATACTCTAGGTCAATTGTTGGTGCTTCGTTGGAAGTCATCCAAAAGAAGA
     ||| |    |  |  |   ||| ||  |  ||| |||       |      |||    |   |  |     |||      ||||    ||| |   ||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| ||||| |||||||| |||||||| ||||| |||||||
----ccaactagacgattgcaacaacaattgtttctgccatgctaacaatggtgctagaagtctagagcctctgatcttaaatgtatttgtcatttgtctgtagGACATCCATGCTGAAGCTGTCAAGAAGAGGCGCCGCGCCACCAAGAAGCCATACTCGAGGTCCATTGTGGGTGCTTCCTTGGAAGTGATCCAGAAGAAGA

upper sequence: LOC_Os05g40820.3 (Oryza sativa), 3'ss of exon 4
lower sequence: GRMZM2G142640_T02 (Zea mays), 3'ss of exon 5
------atgctcaattccttgtatatatgtacagttagtcatgctatgtattgcttccgatcagataaattctgtttacaccctttcccaattttctgttttttagGATATCCATGCTGAAGCTGTCAAGAAGAGGCGCCGCACCACCAAGAAGCCATACTCTAGGTCAATTGTTGGTGCTTCGTTGGAAGTCATCCAAAAGAAGA
          |  ||    |     | || | | ||| |  ||| |||  |    |      | |    |   | |||||  ||||     |||| |  | | |||||||||||||||||||| || ||||||||||||||| ||||||||||||||||||| ||||||||||| |||||||| |||||||| ||||| |||||||
atcgatccatttgatcatgtcatcgtttgca-aattatttctgccatgcttataatagtgctataagtctatagcttacatgcttt-----tttttttgtctgtagGATATCCATGCTGAAGCGGTAAAGAAGAGGCGCCGCGCCACCAAGAAGCCATACTCCAGGTCAATTGTGGGTGCTTCCTTGGAAGTAATCCAGAAGAAGA

upper sequence: LOC_Os05g40820.3 (Oryza sativa), 3'ss of exon 4
lower sequence: GLYMA03G34700.1 (Glycine max), 3'ss of exon 3
atgctcaattccttgtatatatgtacagttagtcatgctatgtattgcttccgatcagataaattctgtttacaccctttcccaattttc-tgt--tttttagGATATCCATGCTGAAGCTGTCAAGAAGAGGCGCCGCACCACCAAGAAGCCATACTCTAGGTCAATTGTTGGTGCTTCGTTGGAAGTCATCCAAAAGAAGA
    |   ||  |||| |  ||||   ||     |   |   || |  | | |    | |    |   |||  |    ||     | | | |||  | | ||||| ||   |   |||||||| ||||||||| | ||| |  |||| ||||| ||||||||||| |||||||||||  |  ||||||| ||||| || ||||
---attggttgtttgtgtgcatgtcatgtgtaggacattgcttagtaatactgcaatggttgcatgcatttgaattgattgtttgtgtgcatgtcatgtgtagGACATTGCTCAAGAAGCTGTGAAGAAGAGGAGACGCGCTGCCAAAAAGCCTTACTCTAGGTCCATTGTTGGTGCCACTCTGGAAGTTATCCAGAAAAAGA

upper sequence: LOC_Os05g40820.3 (Oryza sativa), 3'ss of exon 4
lower sequence: AT3G53020.1 (Arabidopsis thaliana), 3'ss of exon 3
---------atgctcaattccttgtatatatgtacagttagtcatgctatgtattgcttccgatcagataaattctgtttacaccctttcccaattttctgttttttagGATATCCATGCTGAAGCTGTCAAGAAGAGGCGCCGCACCACCAAGAAGCCATACTCTAGGTCAATTGTTGGTGCTTCGTTGGAAGTCATCCAAAAGAAGA
         |  |||| |   ||| || | | |   |||  |  | || ||| ||  |||  ||         | |||| |||  ||    |   | | | |||| ||||||         || ||||| ||||  ||| | ||  ||||||||||||||||||| ||||| |||||||||||| | |||||||| || || |||||||
gtaaaaaaaaaactcagtaatttggatctgtttt--gttgtttgtactttgttttttttc--attgatcctgatttgttaacattctaaaact-ctgtttcttttatagGATGCAGCACAAGAGGCTGTGAAGAGAAGGAGACGTGCCACCAAGAAGCCATACTCAAGGTCCATTGTTGGTGCTACCTTGGAAGTAATTCAGAAGAAGA

upper sequence: LOC_Os05g40820.3 (Oryza sativa), 3'ss of exon 4
lower sequence: Vv16s0100g00650.t01 (Vitis vinifera), 3'ss of exon 2
-------------------------------------------atgctcaattccttgtatatatgtacagttagtcatgctatgtattgcttccgatcagataaattctgtttacaccctttcccaattttctgttttttagGATATCCATGCTGAAGCTGTCAAGAAGAGGCGCCGCACCACCAAGAAGCCATACTCTAGGTCAATTGTTGGTGCTTCGTTGGAAGTCATCCAAAAGAAGA
                                               |  |||    ||  |  || |   | | |  | |  | | ||| ||  ||   |   ||||| | | |  |  ||| |      |||   ||| |||| ||    || |||||||| ||||||| |||||||||| | |||||||||||||| ||||| || || |||||  | ||||| || || || ||||  |
gtaatcaaattttaaaattgtttggctatcaactcattttttgcctttttattgtgggtgaaagtgcattttcacttctaccctat-ttgtttgggaagtggctaattcagctgattcttttttctg---ctctcactttcagGACATTGCAGCAGAAGCTGTTAAGAAGAAGCGCCGCACCGCAAAGAAGCCATACTCAAGGTCCATAGTGGGTGCCACATTGGAGGTTATACAGAAGAGAA

upper sequence: LOC_Os05g40820.3 (Oryza sativa), 3'ss of exon 4
lower sequence: Vv08s0007g04210.t01 (Vitis vinifera), 3'ss of exon 3
---atgctcaattccttgtatatatgtacagttagtcatgctatgtattgcttccgatcagataaattctgtttacaccctttcccaattttctgttttttagGATATCCATGCTGAAGCTGTCAAGAAGAGGCGCCGCACCACCAAGAAGCCATACTCTAGGTCAATTGTTGGTGCTTCGTTGGAAGTCATCCAAAAGAAGA
   ||      ||   |   | | || | |   |      ||||| |||   |  | |  ||   |||   |||    |  |       ||  ||    | |||||||   |   || ||||| ||||||||||| ||  ||||||| ||||| ||||||||||| ||||| |||||| | ||||| || ||||| ||||  |
tgtatatgtgttttggtcactttctggaaaagaatatccactatggattatgtttgttgggagttatttgttttgagtcactaattgggttaatgc---tcagGATATTGCTCAAGAGGCTGTAAAGAAGAGGCGTCGTGCCACCAAAAAGCCCTACTCTAGGTCCATTGTGGGTGCTACATTGGAGGTTATCCAGAAGAGAA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88850397|gb|CI093078.1|CI093078
EST:     ACAGGAAGCAGCACAAGAAG                         GATATCCATGCTGAAGCTGTCAAGAAGAGGCGCCGCACCACCAAGAAGCCA
genomic: ACAGGAAGCAGCACAAGAAGgtattgtatc ... tgttttttagGATATCCATGCTGAAGCTGTCAAGAAGAGGCGCCGCACCACCAAGAAGCCA
EST: gi|33810488|gb|CF331132.1|CF331132
EST:     AGCCTGCAAAGCTTACCTGGACAGCCATGTACAGGAAGCAGCACAAGAAG                         GATATCCATGCTGAAGCTGTCAAGAAGAGGCGCCGCACCACCAAGAAGCCA
genomic: AGCCTGCAAAGCTTACCTGGACAGCCATGTACAGGAAGCAGCACAAGAAGgtattgtatc ... tgttttttagGATATCCATGCTGAAGCTGTCAAGAAGAGGCGCCGCACCACCAAGAAGCCA
EST: gi|86531960|gb|CI172166.1|CI172166
EST:     AGCCTGCAAAGCTTACCTGGACAGCCATGTACAGGAAGCAGCACAAGAAG                         GATATCCATGCTGAAGCTGTCAAGAAGAGGCGCCGCACCACCAAGAAGCCA
genomic: AGCCTGCAAAGCTTACCTGGACAGCCATGTACAGGAAGCAGCACAAGAAGgtattgtatc ... tgttttttagGATATCCATGCTGAAGCTGTCAAGAAGAGGCGCCGCACCACCAAGAAGCCA
EST: gi|88207631|gb|CI207480.1|CI207480
EST:     AGCCTGCAAAGCTTACCTGGACAGCCATGTACAGGAAGCAGCACAAGAAG                         GATATCCATGCTGAAGCTGTCAAGAAGAGGCGCCGCACCACCAAGAAGCCA
genomic: AGCCTGCAAAGCTTACCTGGACAGCCATGTACAGGAAGCAGCACAAGAAGgtattgtatc ... tgttttttagGATATCCATGCTGAAGCTGTCAAGAAGAGGCGCCGCACCACCAAGAAGCCA
EST: gi|3762492|gb|AU029244.1|AU029244
EST:     AGCCTGCAAAGCTTACCTGGACAGCCATGTACAGGAACCAGCACAAGAAG                         GATATCCATGCTGAANCTNTCAAGAAGAGGCNCCGCACCACCAAGAAGCCA
genomic: AGCCTGCAAAGCTTACCTGGACAGCCATGTACAGGAAGCAGCACAAGAAGgtattgtatc ... tgttttttagGATATCCATGCTGAAGCTGTCAAGAAGAGGCGCCGCACCACCAAGAAGCCA
EST: gi|86252330|gb|CI056067.1|CI056067
EST:     AGCCTGCAAAGCTTACCTGGACAGCCATGTACAGGAAGCAGCACAAGAAG                         GATATCCATGCTGAAGCTGTCAAGAAGAGGCGCCGCACCACCAAGAAGCCA
genomic: AGCCTGCAAAGCTTACCTGGACAGCCATGTACAGGAAGCAGCACAAGAAGgtattgtatc ... tgttttttagGATATCCATGCTGAAGCTGTCAAGAAGAGGCGCCGCACCACCAAGAAGCCA
EST: gi|88979982|gb|CI026272.1|CI026272
EST:     AGCCTGCAAAGCTTACCTGGACAGCCATGTACAGGAAGCAGCACAAGAAG                         GATATCCATGCTGAAGCTGTCAAGAAGAGGCGCCGCACCACCAAGAAGCCA
genomic: AGCCTGCAAAGCTTACCTGGACAGCCATGTACAGGAAGCAGCACAAGAAGgtattgtatc ... tgttttttagGATATCCATGCTGAAGCTGTCAAGAAGAGGCGCCGCACCACCAAGAAGCCA
EST: gi|88903650|gb|CI089188.1|CI089188
EST:     TACAGGAAGCAGCACAAGAAG                         GATATCCATGCTGAAGCTGTCAAGAAGAGGCGCCGCACCACCAAGAAGCCA
genomic: TACAGGAAGCAGCACAAGAAGgtattgtatc ... tgttttttagGATATCCATGCTGAAGCTGTCAAGAAGAGGCGCCGCACCACCAAGAAGCCA
EST: gi|86854291|gb|CI254236.1|CI254236
EST:     AGCCTGCAAAGCTTACCTGGACAGCCATGTACAGGAAGCAGCACAAGAAG                         GATATCCATGCTGAAGCTGTCAAGAAGAGGCGCCGCACCACCAAGAAGCCA
genomic: AGCCTGCAAAGCTTACCTGGACAGCCATGTACAGGAAGCAGCACAAGAAGgtattgtatc ... tgttttttagGATATCCATGCTGAAGCTGTCAAGAAGAGGCGCCGCACCACCAAGAAGCCA
EST: gi|396941383|gb|HO188592.1|HO188592
EST:     AGCCTGCAAAGCTTACCTGGACAGCCATGTACAGGAAGCAGCACAAGAAG                         GATATCCATGCTGAAGCTGTCAAGAAGAGGCGCCGCACCACCAAGAAGCCA
genomic: AGCCTGCAAAGCTTACCTGGACAGCCATGTACAGGAAGCAGCACAAGAAGgtattgtatc ... tgttttttagGATATCCATGCTGAAGCTGTCAAGAAGAGGCGCCGCACCACCAAGAAGCCA
EST: gi|89167279|gb|CI252810.1|CI252810
EST:     AGCCTGCAAAGCTTACCTGGACAGCCATGTACAGGAAGCAGCACAAGAAG                         GATATCCATGCTGAAGCTGTCAAGAAGAGGCGCCGCACCACCAAGAAGCCA
genomic: AGCCTGCAAAGCTTACCTGGACAGCCATGTACAGGAAGCAGCACAAGAAGgtattgtatc ... tgttttttagGATATCCATGCTGAAGCTGTCAAGAAGAGGCGCCGCACCACCAAGAAGCCA
EST: gi|88982773|gb|CI028186.1|CI028186
EST:     AGCCTGCAAAGCTTACCTGGACAGCCATGTACAGGAAGCAGCACAAGAAG                         GATATCCATGCTGAAGCTGTCAAGAAGAGGCGCCGCACCACCAAGAAGCCA
genomic: AGCCTGCAAAGCTTACCTGGACAGCCATGTACAGGAAGCAGCACAAGAAGgtattgtatc ... tgttttttagGATATCCATGCTGAAGCTGTCAAGAAGAGGCGCCGCACCACCAAGAAGCCA
EST: gi|5607423|gb|AU076121.1|AU076121
EST:     AGCCTGCAAAGCTTACCTGGACAGCCATGTACAGGAAGCAGCACAAGAAG                         GATATCCATGCTGAAGCTGTCAAGAAGAGGCGCCGCACCACCAAGAAGCCA
genomic: AGCCTGCAAAGCTTACCTGGACAGCCATGTACAGGAAGCAGCACAAGAAGgtattgtatc ... tgttttttagGATATCCATGCTGAAGCTGTCAAGAAGAGGCGCCGCACCACCAAGAAGCCA
EST: gi|88215256|gb|CI215105.1|CI215105
EST:     AGCCTGCAAAGCTTACCTGGACAGCCATGTACAGGAAGCAGCACAAGAAG                         GATATCCATGCTGAAGCTGTCAAGAAGAGGCGCCGCACCACCAAGAAGCCA
genomic: AGCCTGCAAAGCTTACCTGGACAGCCATGTACAGGAAGCAGCACAAGAAGgtattgtatc ... tgttttttagGATATCCATGCTGAAGCTGTCAAGAAGAGGCGCCGCACCACCAAGAAGCCA
EST: gi|8324524|gb|AU091671.1|AU091671
EST:     AGCCTGCAAAGCTTACCTGGACAGCCATGTACAGGAAGCAGCACAAGAAG                         GATATCCATGCTGAAGCTGTCAAGAAGAGGCGCCGCACCACCAAGAAGCCA
genomic: AGCCTGCAAAGCTTACCTGGACAGCCATGTACAGGAAGCAGCACAAGAAGgtattgtatc ... tgttttttagGATATCCATGCTGAAGCTGTCAAGAAGAGGCGCCGCACCACCAAGAAGCCA
EST: gi|88397656|gb|CI684589.1|CI684589
EST:     AGCCTGCAAAGCTTACCTGGACAGCCATGTACAGGAAGCAGCACAAGAAG                         GATATCCATGCTGAAGCTGTCAAGAAGAGGCGCCGCACCACCAAGAAGCCA
genomic: AGCCTGCAAAGCTTACCTGGACAGCCATGTACAGGAAGCAGCACAAGAAGgtattgtatc ... tgttttttagGATATCCATGCTGAAGCTGTCAAGAAGAGGCGCCGCACCACCAAGAAGCCA
EST: gi|87016024|gb|CI281767.1|CI281767
EST:     AGCCTGCAAAGCTTACCTGGACAGCCATGTACAGGAAGCAGCACAAGAAG                         GATATCCATGCTGAAGCTGTCAAGAAGAGGCGCCGCACCACCAAGAAGCCA
genomic: AGCCTGCAAAGCTTACCTGGACAGCCATGTACAGGAAGCAGCACAAGAAGgtattgtatc ... tgttttttagGATATCCATGCTGAAGCTGTCAAGAAGAGGCGCCGCACCACCAAGAAGCCA
EST: gi|86432487|gb|CI086098.1|CI086098
EST:     ACAGGAAGCAGCACAAGAAG                         GATATCCATGCTGAAGCTGTCAAGAAGAGGCGCCGCACCACCAAGAAGCCA
genomic: ACAGGAAGCAGCACAAGAAGgtattgtatc ... tgttttttagGATATCCATGCTGAAGCTGTCAAGAAGAGGCGCCGCACCACCAAGAAGCCA
EST: gi|86530470|gb|CI170676.1|CI170676
EST:     AGCCTGCAAAGCTTACCTGGACAGCCATGTACAGGAAGCAGCACAAGAAG                         GATATCCATGCTGAAGCTGTCAAGAAGAGGCGCCGCACCACCAAGAAGCCA
genomic: AGCCTGCAAAGCTTACCTGGACAGCCATGTACAGGAAGCAGCACAAGAAGgtattgtatc ... tgttttttagGATATCCATGCTGAAGCTGTCAAGAAGAGGCGCCGCACCACCAAGAAGCCA
EST: gi|55409737|gb|CV722113.1|CV722113
EST:     AGCCTGCAAAGCTTACCTGGACAGCCATGTACAGGAAGCAGCACAAGAAG                         GATATCCATGCTGAAGCTGTCAAGAAGAGGCGCCGCACCACCAAGAAGCCA
genomic: AGCCTGCAAAGCTTACCTGGACAGCCATGTACAGGAAGCAGCACAAGAAGgtattgtatc ... tgttttttagGATATCCATGCTGAAGCTGTCAAGAAGAGGCGCCGCACCACCAAGAAGCCA
EST: gi|33810490|gb|CF331133.1|CF331133
EST:     AGCCTGCAAAGCTTACCTGGACAGCCATGTACAGGAAGCAGCACAAGAAG                         GATATCCATGCTGAAGCTGTCAAGAAGAGGCGCCGCACCACCAAGAAGCCA
genomic: AGCCTGCAAAGCTTACCTGGACAGCCATGTACAGGAAGCAGCACAAGAAGgtattgtatc ... tgttttttagGATATCCATGCTGAAGCTGTCAAGAAGAGGCGCCGCACCACCAAGAAGCCA
EST: gi|86821199|gb|CI266749.1|CI266749
EST:     AGCCTGCAAAGCTTACCTGGACAGCCATGTACAGGAAGCAGCACAAGAAG                         GATATCCATGCTGAAGCTGTCAAGAAGAGGCGCCGCACCACCAAGAAGCCA
genomic: AGCCTGCAAAGCTTACCTGGACAGCCATGTACAGGAAGCAGCACAAGAAGgtattgtatc ... tgttttttagGATATCCATGCTGAAGCTGTCAAGAAGAGGCGCCGCACCACCAAGAAGCCA
EST: gi|88208925|gb|CI206776.1|CI206776
EST:     TTACCTGGACAGCCATGTACAGGAAGCAGCACAAGAAG                         GATATCCATGCTGAAGCTGTCAAGAAGAGGCGCCGCACCACCAAGAAGCCA
genomic: TTACCTGGACAGCCATGTACAGGAAGCAGCACAAGAAGgtattgtatc ... tgttttttagGATATCCATGCTGAAGCTGTCAAGAAGAGGCGCCGCACCACCAAGAAGCCA
EST: gi|86500360|gb|CI142993.1|CI142993
EST:     AGCCTGCAAAGCTTACCTGGACAGCCATGTACAGGAAGCAGCACAAGAAG                         GATATCCATGCTGAAGCTGTCAAGAAGAGGCGCCGCACCACCAAGAAGCCA
genomic: AGCCTGCAAAGCTTACCTGGACAGCCATGTACAGGAAGCAGCACAAGAAGgtattgtatc ... tgttttttagGATATCCATGCTGAAGCTGTCAAGAAGAGGCGCCGCACCACCAAGAAGCCA
EST: gi|86424361|gb|CI063122.1|CI063122
EST:     AGCCTGCAAAGCTTACCTGGACAGCCATGTACAGGAAGCAGCACAAGAAG                         GATATCCATGCTGAAGCTGTCAAGAAGAGGCGCCGCACCACCAAGAAGCCA
genomic: AGCCTGCAAAGCTTACCTGGACAGCCATGTACAGGAAGCAGCACAAGAAGgtattgtatc ... tgttttttagGATATCCATGCTGAAGCTGTCAAGAAGAGGCGCCGCACCACCAAGAAGCCA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 71 (upstream exon), 38 (downstream exon)
Score: 4

CTTCCTTTTTGCAAACTCAAAATGCAAGCGCTACTTCCACAACCGCCTGAAGCCTGCAAAGCTTACCTGGACAGCCATGTACAGGAAGCAGCACAAGAAGgtattgtatc ... tgttttttagGATATCCATGCTGAAGCTGTCAAGAAGAGGCGCCGCACCACCAAGAAGCCATACTCTAGGTCAATTGTTGGTGCTTCGTTGGAAGTCATCCAAAAGAAGA




<











<


<











 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgcttccgatcagataaattctgtttacaccctttcccaattttctgttttttagGATATCCATGCTGAAGCTGTCAAGAAGAGGCGCCGCACCACCAAGAAGCCATACTCTAGGTCAATTGTTGGTGCTTCGTTGGAAGTCATCCAAAAGAAGA
                             ccctttcccaattttc  CT-rich tract
                                      aattttctgtttttta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
atgctcaattccttgtatatatgtacagttagtcatgctatgtattgcttccgatcagataaattctgtttacaccctttcccaattttctgttttttagGATATCCATGCTGAAGCTGTCAAGAAGAGGCGCCGCACCACCAAGAAGCCATACTCTAGGTCAATTGTTGGTGCTTCGTTGGAAGTCATCCAAAAGAAGA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG