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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgtgcttcagaatttattttagtttttgtttctctttattttaggaggatattctacccagttttgcaaatatgggtttctgatgttcttttattctcccaatcagGAAAATGGATATCAACTATTA

Basic information

species Oryza sativa
transcript LOC_Os05g38710.3
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33796855|gb|CF324291.1|CF324291
EST:     GACGAGATTGGAGTCAGTCTGGTGTTGCTCGTCTTTTTTCTGCA-TAAAG                         GAAAATGGATATCAACTATTA
genomic: GACGAGATTGGAGTCAGTCTGGTGTTGCTCGTCTTTTTTCTGCAATAAAGgtgtgcttca ... tcccaatcagGAAAATGGATATCAACTATTA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttctacccagttttgcaaatatgggtttctgatgttcttttattctcccaatcagGAAAATGGATATCAACTATTA
                          ttctgat  putative branch site (score: 3)
 tgttcttttattctcc  CT-rich tract
 ttcttttatt  TA-rich tract