1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...aatatttcaaagtgtttcaaaaagtttttgccagtctcctgatgtgtggtactgcaaactgtaataagctcaatagtacttgatctgaatgattatacagGATTGTCCTGGAAACAGAAGGAAGTGTGATAGCTGAAAAGGTGTCAGCACATGGAATAGAAGGTGCTACTTCACTCGCTGAGCAG
species | Oryza sativa |
transcript | LOC_Os05g38610.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GAAAATCTGGATCTCATCCTATTGTGCCTCGATGAAATTGTTGATGGAGG GATTGTCCTGGAAACAGAAGGAAGTGTGATAGCTGAAAAGGTGTCAGCACAEST: gi|88983146|gb|CI020710.1|CI020710
genomic: GAAAATCTGGATCTCATCCTATTGTGCCTCGATGAAATTGTTGATGGAGGgtaaatccta ... gattatacagGATTGTCCTGGAAACAGAAGGAAGTGTGATAGCTGAAAAGGTGTCAGCACA
EST: GAAAATCTGGATCTCATCCTATTGTGCCTCGATGAAATTGTTGATGGAGG GATTGTCCTGGAAACAGAAGGAAGTGTGATAGCTGAAAAGGTGTCAGCACAEST: gi|33688934|gb|CF317173.1|CF317173
genomic: GAAAATCTGGATCTCATCCTATTGTGCCTCGATGAAATTGTTGATGGAGGgtaaatccta ... gattatacagGATTGTCCTGGAAACAGAAGGAAGTGTGATAGCTGAAAAGGTGTCAGCACA
EST: AAAATCTGGATCTCATCCTATTGTGCCTCGATGAAATTGTTGATGGAAGG GATTGTCCTGGAAACAGAAGGAAGTGTGATAGCTGEST: gi|33692847|gb|CF321086.1|CF321086
genomic: AAAATCTGGATCTCATCCTATTGTGCCTCGATGAAATTGTTGATGGA-GGgtaaatccta ... gattatacagGATTGTCCTGGAAACAGAAGGAAGTGTGATAGCTG
EST: GAAAATCTGGATCTCATCCTATTGTGCCTCGATGAAATTGTTGATGGAGG GATTGTCCTGGAAACAGAAGGAAGTGTGATAGCTGAAAAGGTGTCAGCACAEST: gi|396941400|gb|HO188609.1|HO188609
genomic: GAAAATCTGGATCTCATCCTATTGTGCCTCGATGAAATTGTTGATGGAGGgtaaatccta ... gattatacagGATTGTCCTGGAAACAGAAGGAAGTGTGATAGCTGAAAAGGTGTCAGCACA
EST: GAAAATCTGGATCTCATCCTATTGTGCCTCGATGAAATTGTTGATGGAGG GATTGTCCTGGAAACAGAAGGAAGTGTGATAGCTGAAAAGGTGTCAGCACAEST: gi|33692848|gb|CF321087.1|CF321087
genomic: GAAAATCTGGATCTCATCCTATTGTGCCTCGATGAAATTGTTGATGGAGGgtaaatccta ... gattatacagGATTGTCCTGGAAACAGAAGGAAGTGTGATAGCTGAAAAGGTGTCAGCACA
EST: GAAAATCTGGATCTCATCCTATTGTGCCTCGATGAAATTGTTGATGGAGG GGATTGTCCTGGAAACAGAAGGAAGTGTGATAGCTGAAAAGGTGTCAGCACEST: gi|88839775|gb|CI015866.1|CI015866
genomic: GAAAATCTGGATCTCATCCTATTGTGCCTCGATGAAATTGTTGATGGAGGgtaaatccta ... gattatacagG-ATTGTCCTGGAAACAGAAGGAAGTGTGATAGCTGAAAAGGTGTCAGCAC
EST: GATCTCATCCTATTGTGCCTCGATGAAATTGTTGATGGAGG GATTGTCCTGGAAACAGAAGGAAGTGTGATAGCTGAAAAGGTGTCAGCACAEST: gi|8857691|gb|AU095009.1|AU095009
genomic: GATCTCATCCTATTGTGCCTCGATGAAATTGTTGATGGAGGgtaaatccta ... gattatacagGATTGTCCTGGAAACAGAAGGAAGTGTGATAGCTGAAAAGGTGTCAGCACA
EST: AAATCTGGATCTCATCCCTATTTGTGCCTCGATGAAATTGTTGATGGAGG GATTGTCCTGGAAACAGAAGGAAGTGTGATAGCTGAAAAGGTGTCAGCACAEST: gi|88541797|gb|CI471090.1|CI471090
genomic: AAATCTGGATCTCAT-CCTA-TTGTGCCTCGATGAAATTGTTGATGGAGGgtaaatccta ... gattatacagGATTGTCCTGGAAACAGAAGGAAGTGTGATAGCTGAAAAGGTGTCAGCACA
EST: ATGAAATTGTTGATGGAGG GATTGTCCTGGAAACAGAAGGAAGTGTGATAGCTGAAAAGGTGTCAGCACAEST: gi|29682909|gb|CB679184.1|CB679184
genomic: ATGAAATTGTTGATGGAGGgtaaatccta ... gattatacagGATTGTCCTGGAAACAGAAGGAAGTGTGATAGCTGAAAAGGTGTCAGCACA
EST: GAAAATCTGGATCTCATCCTATTGTGCCTCGATGAAATTGTTGATGGAGG GATTGTCCTGGAAACAGAAGGAAGTGTGATAGCTGAAAAGGTGTCAGCACAEST: gi|33820857|gb|CF336233.1|CF336233
genomic: GAAAATCTGGATCTCATCCTATTGTGCCTCGATGAAATTGTTGATGGAGGgtaaatccta ... gattatacagGATTGTCCTGGAAACAGAAGGAAGTGTGATAGCTGAAAAGGTGTCAGCACA
EST: GAAAATCTGGATCTCATCCTATTGTGCCTCGATGAAATTGTTGATGGAGG GATTGTCCTGGAAACAGAAGGAAGTGTGATAGCTGAAAAGGTGTCAGCACAEST: gi|163918457|gb|EG713211.1|EG713211
genomic: GAAAATCTGGATCTCATCCTATTGTGCCTCGATGAAATTGTTGATGGAGGgtaaatccta ... gattatacagGATTGTCCTGGAAACAGAAGGAAGTGTGATAGCTGAAAAGGTGTCAGCACA
EST: GAAAATCTGGATCTCATCCTATTGTGCCTCGATGAAATTGTTGATGGAGG GATTGTCCTGGAAACAGAAGGAAGTGTGATAGCTGAAAAGGTGTCAGCACAEST: gi|33678548|gb|CF306787.1|CF306787
genomic: GAAAATCTGGATCTCATCCTATTGTGCCTCGATGAAATTGTTGATGGAGGgtaaatccta ... gattatacagGATTGTCCTGGAAACAGAAGGAAGTGTGATAGCTGAAAAGGTGTCAGCACA
EST: GAAAATCTGGATCTCATCCTATTGTGCCTCGATGAAATTGTTGATGGAGG GATTGTCCTGGAAAEST: gi|218500698|gb|FG952590.1|FG952590
genomic: GAAAATCTGGATCTCATCCTATTGTGCCTCGATGAAATTGTTGATGGAGGgtaaatccta ... gattatacagGATTGTCCTGGAAA
EST: GAAAATCTGGATCTCATCCTATTGTGCCTCGATGAAATTGTTGATGGAGG GATTGTCCTGGAAACAGAAGGAAGTGTGATAGCTGAAAAGGTGTCAGCACAEST: gi|88531839|gb|CI460354.1|CI460354
genomic: GAAAATCTGGATCTCATCCTATTGTGCCTCGATGAAATTGTTGATGGAGGgtaaatccta ... gattatacagGATTGTCCTGGAAACAGAAGGAAGTGTGATAGCTGAAAAGGTGTCAGCACA
EST: TATTGTGCCTCGATGAAATTGTTGATGGAGG GATTGTCCTGGAAACAGAAGGAAGTGTGATAGCTGAAAAGGTGTCAGCACAEST: gi|58585721|gb|CF984029.1|CF984029
genomic: TATTGTGCCTCGATGAAATTGTTGATGGAGGgtaaatccta ... gattatacagGATTGTCCTGGAAACAGAAGGAAGTGTGATAGCTGAAAAGGTGTCAGCACA
EST: GAAAATCTGGATCTCATCCTATTGTGCCTCGATGAAATTGTTGATGGAGG GATTGTCCTGGAAACAGAAGGAAGTGTGAEST: gi|88383090|gb|CI538118.1|CI538118
genomic: GAAAATCTGGATCTCATCCTATTGTGCCTCGATGAAATTGTTGATGGAGGgtaaatccta ... gattatacagGATTGTCCTGGAAACAGAAGGAAGTGTGA
EST: AAATTGTTGATGGAGG GATTGTCCTGGAAACAGAAGGAAGTGTGATAGCTGAAAAGGTGTCAGCACAEST: gi|33683273|gb|CF311512.1|CF311512
genomic: AAATTGTTGATGGAGGgtaaatccta ... gattatacagGATTGTCCTGGAAACAGAAGGAAGTGTGATAGCTGAAAAGGTGTCAGCACA
EST: AAAATCTGGATCTCATCCTATTGTGCCTCGATGAAATTGTTGATGGAAGG GATTGTCCTGGAAACAGAAGGAAGTGTGATAGCTGAAAAGGTGTCAGCAC
genomic: AAAATCTGGATCTCATCCTATTGTGCCTCGATGAAATTGTTGATGGA-GGgtaaatccta ... gattatacagGATTGTCCTGGAAACAGAAGGAAGTGTGATAGCTGAAAAGGTGTCAGCAC
gtggtactgcaaactgtaataagctcaatagtacttgatctgaatgattatacagGATTGTCCTGGAAACAGAAGGAAGTGTGATAGCTGAAAAGGTGTCAGCACATGGAATAGAAGGTGCTACTTCACTCGCTGAGCAG
acttgat putative branch site (score: 13)
aatgattata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aatatttcaaagtgtttcaaaaagtttttgccagtctcctgatgtgtggtactgcaaactgtaataagctcaatagtacttgatctgaatgattatacagGATTGTCCTGGAAACAGAAGGAAGTGTGATAGCTGAAAAGGTGTCAGCACATGGAATAGAAGGTGCTACTTCACTCGCTGAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - tgtttca
- - - - - - - - - - - - tttttgc
- - - - - - - - - - - - - - - - - - -cctgatg
- - - - - - - - - - - - - - - - - - - - - - - - -tactgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgatctg