Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aattcattttggaggcttggcgcgcacttatcagtgttaatttggaagatttgtggtcaattattttcttgctaaattattttgtgcttgtaacttgcagGTTGAAAGTATAGTTCTGAGCATCATTTCGATGCTCTCTAGTCCAAATGATGAGTCTCCAGCAAATATTGAAGCGGCT

Basic information

species Oryza sativa
transcript LOC_Os05g38550.2
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os05g38550.2 (Oryza sativa), 3'ss of exon 4
lower sequence: GRMZM2G007276_T03 (Zea mays), 3'ss of exon 4
aattcattttggaggcttggcgcgcacttatcagtgttaatttggaagatttgtggtcaattattttcttgcta-aattattttg---tgcttgtaacttgcagGTTGAAAGTATAGTTCTGAGCATCATTTCGATGCTCTCTAGTCCAAATGATGAGTCTCCAGCAAATATTGAAGCGGCT
   |  |  || | ||   | |  || | |    ||||    |          |  |||||     | |||||  | ||| ||||   ||||| |    |||||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||| || 
---tgttgatgtatgccctg-gtccattaacttctgtttgcatcagtagaaactaatcaatgtgcatgttgctttagttaatttgctgtgctttttttatgcagGTTGAAAGTATAGTTCTGAGCATCATTTCAATGCTCTCTAGTCCGAATGACGAGTCTCCAGCAAATATTGAAGCTGCC

upper sequence: LOC_Os05g38550.2 (Oryza sativa), 3'ss of exon 4
lower sequence: GRMZM2G012052_T01 (Zea mays), 3'ss of exon 4
-----aattcattttggaggcttggcgcgcactta--tcagtgttaatttggaagatttgtggtcaattattttcttgctaaattattttgtgcttgtaacttgcagGTTGAAAGTATAGTTCTGAGCATCATTTCGATGCTCTCTAGTCCAAATGATGAGTCTCCAGCAAATATTGAAGCGGCT
       |  | | | |    ||         |||  ||||| | ||  | ||  || ||       || |||||   | || ||||  ||   | |||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||| || 
ttttatgtatactctagcccattattttttgtttacatcagtat-aaactagacaatgtgcat---gttgttttcc--ccaacttatcctgctttcgtaaat-gcagGTTGAAAGTATAGTTCTGAGCATCATTTCGATGCTCTCTAGTCCAAATGACGAGTCTCCAGCGAATATCGAAGCTGCC

upper sequence: LOC_Os05g38550.2 (Oryza sativa), 3'ss of exon 4
lower sequence: GLYMA15G04470.2 (Glycine max), 3'ss of exon 4
aattcattttggaggcttggcgcgcacttatcagtgtt-aatttggaagatttgtggtcaatta---ttttcttgctaaattattttgtgcttg-taacttgcagGTTGAAAGTATAGTTCTGAGCATCATTTCGATGCTCTCTAGTCCAAATGATGAGTCTCCAGCAAATATTGAAGCGGCT----------------------
      |||| |   |||   |  |||   |    |||  |  |   || | |   |  | |||     | |||   || | || || |   || |  ||||||||| || ||||||||  | || ||||| |||||||| |||||||| |||||||| |||||||||||| ||||||| ||                       
-----gtttttgccacttcttgtccaccacttgtggtttgacatactagttgtaaagctatttaaaacctgcttatgaattaatattatatatgctgtcttgcagGTAGAGAGTATAGTATTAAGTATCATATCGATGCTTTCTAGTCCTAATGATGAATCTCCAGCAAATGTTGAAGCTGCGGTAAGTTTGACCATTTTGTGAT

upper sequence: LOC_Os05g38550.2 (Oryza sativa), 3'ss of exon 4
lower sequence: GLYMA15G04470.1 (Glycine max), 3'ss of exon 4
aattcattttggaggcttggcgcgcacttatcagtgtt-aatttggaagatttgtggtcaatta---ttttcttgctaaattattttgtgcttg-taacttgcagGTTGAAAGTATAGTTCTGAGCATCATTTCGATGCTCTCTAGTCCAAATGATGAGTCTCCAGCAAATATTGAAGCGGCT
      |||| |   |||   |  |||   |    |||  |  |   || | |   |  | |||     | |||   || | || || |   || |  ||||||||| || ||||||||  | || ||||| |||||||| |||||||| |||||||| |||||||||||| ||||||| || 
-----gtttttgccacttcttgtccaccacttgtggtttgacatactagttgtaaagctatttaaaacctgcttatgaattaatattatatatgctgtcttgcagGTAGAGAGTATAGTATTAAGTATCATATCGATGCTTTCTAGTCCTAATGATGAATCTCCAGCAAATGTTGAAGCTGCG

upper sequence: LOC_Os05g38550.2 (Oryza sativa), 3'ss of exon 4
lower sequence: AT5G59300.1 (Arabidopsis thaliana), 3'ss of exon 4
-----------------------------------------------------aattcattttggaggct----tggcgcgcac-ttatcagtgttaatttggaagatttgtg----gtcaattattttcttgctaaattattttgtgct-tgtaacttgcagGTTGAAAGTATAGTTCTGAGCATCATTTCGATGCTCTCTAGTCCAAATGATGAGTCTCCAGCAAATATTGAAGCGGCT
                                                     | |  ||  |    | |    | |  |  ||  ||| |  |    | | |  ||||| |     |||    || ||| |||   | |         | ||   ||| |||||||| |||||  |  |||| ||||| || ||||| ||| |||| || |||||||||||||||||| ||||||| || 
gtatgttcaaattgatttgagtttgttcatttttgttcgcttcatagtagtagattctatgattagagttactatagttcagacactataaagggatctctaggtgatttatttcatgtctcagatgttcatgccgtagtgaaacaaattatggtgctttcagGTTGAGAGTATTATGTTGAGTATCATATCAATGCTTTCTGGTCCTAACGATGAGTCTCCAGCAAATGTTGAAGCTGCC

upper sequence: LOC_Os05g38550.2 (Oryza sativa), 3'ss of exon 4
lower sequence: Vv06s0004g04430.t01 (Vitis vinifera), 3'ss of exon 4
aattcattttggaggcttggcgcg-cacttatcagtgttaatttggaagatttgtggtcaattattttcttgcta-aattattttgtgcttgtaac-ttgcagGTTGAAAGTATAGTTCTGAGCATCATTTCGATGCTCTCTAGTCCAAATGATGAGTCTCCAGCAAATATTGAAGCGGCT
     ||| | |||  |  |  |  |   | |      | ||||     || |   | | ||  |  |     || || ||||   |   ||| |  |  |||||||||||||||||| |||| ||||| |||||||| || || || |||||||| || || ||||| |||||||| || 
---atattatagagtttaaggtcatcgtgtgttgacaattattttccctatctagcgaccatattaatgcacttacaactattgcattgatgttatgtcacagGTTGAAAGTATAGTTTTGAGTATCATATCGATGCTTTCCAGCCCTAATGATGAATCACCTGCAAACATTGAAGCTGCA

upper sequence: LOC_Os05g38550.2 (Oryza sativa), 3'ss of exon 4
lower sequence: Vv08s0007g00120.t01 (Vitis vinifera), 3'ss of exon 4
--aattcattttggaggcttggcgcgcacttatcagtgttaatttggaagatttgtggtcaattattttcttgctaa-attattttgtgcttgtaacttgcagGTTGAAAGTATAGTTCTGAGCATCATTTCGATGCTCTCTAGTCCAAATGATGAGTCTCCAGCAAATATTGAAGCGGCT
  ||   ||  || |   |    |    | ||      | | ||| ||     | | |  | ||  ||| |  ||   |||| |  |    | | || ||||||||||||| |||||| |||| ||||| || ||||| || |||||||||||||| ||||| |||||||||||||| |||
gaaaaagatactgtatattatttg---gcatactgacatcacttttgattcccttttggtatttgctttttgacttttattactgggatggtttcacatgcagGTTGAAAGCATAGTTTTGAGTATCATATCAATGCTTTCAAGTCCAAATGATGAATCTCCTGCAAATATTGAAGCTGCT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86524201|gb|CI164407.1|CI164407
EST:     ATCCCAACGGTTATGAGCTTGCGAGCGAACGGTGGACACCTGTGCATACA                         GTTGAAAGTATAGTTCTGAGCATCATTTCGATGCTCTCTAGTCCAAATGAT
genomic: ATCCCAACGGTTATGAGCTTGCGAGCGAACGGTGGACACCTGTGCATACAgtaggttctt ... taacttgcagGTTGAAAGTATAGTTCTGAGCATCATTTCGATGCTCTCTAGTCCAAATGAT
EST: gi|33686873|gb|CF315112.1|CF315112
EST:     TTATGAGCTTGCGAGCGAACGGTGGACACCTGTGCATACA                         GTTGAAAGTATAGTTCTGAGCATCATTTCGATGCTCTCTAGTCCAAATGAT
genomic: TTATGAGCTTGCGAGCGAACGGTGGACACCTGTGCATACAgtaggttctt ... taacttgcagGTTGAAAGTATAGTTCTGAGCATCATTTCGATGCTCTCTAGTCCAAATGAT
EST: gi|55442237|gb|CV734438.1|CV734438
EST:     TGAGCTTGCGAGCGAACGGTGGACACCTGTGCATACA                         GTTGAAAGTATAGTTCTGAGCATCATTTCGATGCTCTCTAGTCCAAATGAT
genomic: TGAGCTTGCGAGCGAACGGTGGACACCTGTGCATACAgtaggttctt ... taacttgcagGTTGAAAGTATAGTTCTGAGCATCATTTCGATGCTCTCTAGTCCAAATGAT
EST: gi|86425481|gb|CI070578.1|CI070578
EST:     ATCCCAACGGTTATGAGCTTGCGAGCGAACGGTGGACACCTGTGCATACA                         GTTGAAAGTATAGTTCTGAGCATCATTTCGATGCTCTCTAGTCCAAATGAT
genomic: ATCCCAACGGTTATGAGCTTGCGAGCGAACGGTGGACACCTGTGCATACAgtaggttctt ... taacttgcagGTTGAAAGTATAGTTCTGAGCATCATTTCGATGCTCTCTAGTCCAAATGAT
EST: gi|55414096|gb|CV726472.1|CV726472
EST:     ATCCCAACGGTTATGAGCTTGCGAGCGAACGGTGGACACCTGTGCATACA                         GTTGAAAGTATAGTTC
genomic: ATCCCAACGGTTATGAGCTTGCGAGCGAACGGTGGACACCTGTGCATACAgtaggttctt ... taacttgcagGTTGAAAGTATAGTTC
EST: gi|55442235|gb|CV734437.1|CV734437
EST:     ATCCCAACGGTTATGAGCTTGCGAGCGAACGGTGGACACCTGTGCATACA                         GTTGAAAGTATAGTTC
genomic: ATCCCAACGGTTATGAGCTTGCGAGCGAACGGTGGACACCTGTGCATACAgtaggttctt ... taacttgcagGTTGAAAGTATAGTTC
EST: gi|33692575|gb|CF320814.1|CF320814
EST:     ATCCCAACGGTTATGAGCTTGCGAGCGAACGGTGGACACCTGTGCATACA                         GTTGAAAGTATAGTTCTGAGCATCATTTCGATGCTCTCTAGTCCAAATGAT
genomic: ATCCCAACGGTTATGAGCTTGCGAGCGAACGGTGGACACCTGTGCATACAgtaggttctt ... taacttgcagGTTGAAAGTATAGTTCTGAGCATCATTTCGATGCTCTCTAGTCCAAATGAT
EST: gi|86540527|gb|CI180733.1|CI180733
EST:     GGTTATGAGCTTGCGAGCGAACGGTGGACACCTGTGCATACA                         GTTGAAAGTATAGTTCTGAGCATCATTTCGATGCTCTCTAGTCCAAATGAT
genomic: GGTTATGAGCTTGCGAGCGAACGGTGGACACCTGTGCATACAgtaggttctt ... taacttgcagGTTGAAAGTATAGTTCTGAGCATCATTTCGATGCTCTCTAGTCCAAATGAT
EST: gi|3760645|gb|C97899.1|C97899
EST:     ATCCCAACGGTTATGAGCTTGCGAGCGAACGGTGGACACCTGTGCATACA                         GTTGAAAGTATAGTTCTGAGCATCATTTCGATGCTCTC
genomic: ATCCCAACGGTTATGAGCTTGCGAGCGAACGGTGGACACCTGTGCATACAgtaggttctt ... taacttgcagGTTGAAAGTATAGTTCTGAGCATCATTTCGATGCTCTC
EST: gi|89192152|gb|CI393509.1|CI393509
EST:     GTGGACACCTGTGCATACA                         G
genomic: GTGGACACCTGTGCATACAgtaggttctt ... taacttgcag-
EST: gi|89192152|gb|CI393509.1|CI393509
EST:     GTGGACACCTGTGCATACA                         G
genomic: GTGGACACCTGTGCATACAgtaggttctt ... taacttgcag-
EST: gi|33655770|gb|CF278384.1|CF278384
EST:     ATCCCAACGGTTATGAGCTTGCGAGCGAACGGTGGACACCTGTGCATACA                         GTTGAAAGTATAGTTCTGAGCATCATTTCGATGCTCTCTAGTCCAAATGAT
genomic: ATCCCAACGGTTATGAGCTTGCGAGCGAACGGTGGACACCTGTGCATACAgtaggttctt ... taacttgcagGTTGAAAGTATAGTTCTGAGCATCATTTCGATGCTCTCTAGTCCAAATGAT
EST: gi|29680264|gb|CB676539.1|CB676539
EST:     ATCCCAACGGTTATGAGCTTGCGAGCGAACGGTGGACACCTGTGCATACA                         GTTGAAAGTATAGTTCTGAGCATCATTTCGATGCTCTCTAGTCCAAATGAT
genomic: ATCCCAACGGTTATGAGCTTGCGAGCGAACGGTGGACACCTGTGCATACAgtaggttctt ... taacttgcagGTTGAAAGTATAGTTCTGAGCATCATTTCGATGCTCTCTAGTCCAAATGAT
EST: gi|33683398|gb|CF311637.1|CF311637
EST:     TCCCAANCGGTTATGAGCTTGCGAGCGAACGGTGGACACCTGTGCATACA                         GTTGAAAGTATAGTTCTGAGCATCATTTCGATGCTCTCTAGTCCAAATGAT
genomic: TCCCAA-CGGTTATGAGCTTGCGAGCGAACGGTGGACACCTGTGCATACAgtaggttctt ... taacttgcagGTTGAAAGTATAGTTCTGAGCATCATTTCGATGCTCTCTAGTCCAAATGAT
EST: gi|88215114|gb|CI214963.1|CI214963
EST:     ATCCCAACGGTTATGAGCTTGCGAGCGAACGGTGGACACCTGTGCATACA                         GTTGAAAGTATAGTTCTGAGCATCATTTCGATGCTCTCTAGTCCAAATGAT
genomic: ATCCCAACGGTTATGAGCTTGCGAGCGAACGGTGGACACCTGTGCATACAgtaggttctt ... taacttgcagGTTGAAAGTATAGTTCTGAGCATCATTTCGATGCTCTCTAGTCCAAATGAT
EST: gi|55434997|gb|CV730625.1|CV730625
EST:     ATGAGCTTGCGAGCGAACGGTGGACACCTGTGCATACA                         GTTGAAAGTATAGTTCTGAGCATCATTTCGATGCTCTCTAGTCCAAATGAT
genomic: ATGAGCTTGCGAGCGAACGGTGGACACCTGTGCATACAgtaggttctt ... taacttgcagGTTGAAAGTATAGTTCTGAGCATCATTTCGATGCTCTCTAGTCCAAATGAT
EST: gi|86258966|gb|CI004510.1|CI004510
EST:     TGAGCTTGCGAGCGAACGGTGGACACCTGTGCATACA                         GTTGAAAGTATAGTTCTGAGCATCATTTCGATGCTCTCTAGTCCAAATGAT
genomic: TGAGCTTGCGAGCGAACGGTGGACACCTGTGCATACAgtaggttctt ... taacttgcagGTTGAAAGTATAGTTCTGAGCATCATTTCGATGCTCTCTAGTCCAAATGAT
EST: gi|55412106|gb|CV724482.1|CV724482
EST:     CTTGCGAGCGAACGGTGGACACCTGTGCATACA                         GTTGAAAGTATAGTTCTGAGCATCATTTCGATGCTCTCTAGTCCAAATGAT
genomic: CTTGCGAGCGAACGGTGGACACCTGTGCATACAgtaggttctt ... taacttgcagGTTGAAAGTATAGTTCTGAGCATCATTTCGATGCTCTCTAGTCCAAATGAT
EST: gi|2310768|gb|C26923.1|C26923
EST:     ATCCCAACGGTTATGAGCTTGCGAGCGAACGGTGGACACCTGTGCATACA                         GTTGAAAGTATAGTTCTGAGCATCATTTCGATGCTCTCTAGTCCAAATNAT
genomic: ATCCCAACGGTTATGAGCTTGCGAGCGAACGGTGGACACCTGTGCATACAgtaggttctt ... taacttgcagGTTGAAAGTATAGTTCTGAGCATCATTTCGATGCTCTCTAGTCCAAATGAT
EST: gi|33653640|gb|CF276254.1|CF276254
EST:     ATCCCAACGGTTATGAGCTTGCGAGCGAACGGTGGACACCTGTGCATACA                         GTTGAAAGTATAGTTCTGAGCATCATTTCGATGCTCTCTAGTCCAAATGAT
genomic: ATCCCAACGGTTATGAGCTTGCGAGCGAACGGTGGACACCTGTGCATACAgtaggttctt ... taacttgcagGTTGAAAGTATAGTTCTGAGCATCATTTCGATGCTCTCTAGTCCAAATGAT
EST: gi|88244260|gb|CI243382.1|CI243382
EST:     TTATGAGCTTGCGAGCGAACGGTGGACACCTGTGCATACA                         GTTGAAAGTATAGTTCTGAGCATCATTTCGATGCTCTCTAGTCCAAATGAT
genomic: TTATGAGCTTGCGAGCGAACGGTGGACACCTGTGCATACAgtaggttctt ... taacttgcagGTTGAAAGTATAGTTCTGAGCATCATTTCGATGCTCTCTAGTCCAAATGAT
EST: gi|33810432|gb|CF331103.1|CF331103
EST:     ATCCCAACGGTTATGAGCTTGCGAGCGAACGGTGGACACCTGTGCGTACA                         GTTGAAAGTATAGTTCTGAGCATCATTTCGATGCTCTCTAGTCCAAATGAT
genomic: ATCCCAACGGTTATGAGCTTGCGAGCGAACGGTGGACACCTGTGCATACAgtaggttctt ... taacttgcagGTTGAAAGTATAGTTCTGAGCATCATTTCGATGCTCTCTAGTCCAAATGAT
EST: gi|29673156|gb|CB669431.1|CB669431
EST:     ATCCCAACGGTTATGAGCTTGCGAGCGAACGGTGGACACCTGTGCATACA                         GTTGAAAGTATAGTTCTGAGCATCATTTCGATGCTCTCTAGTCCAAATGAT
genomic: ATCCCAACGGTTATGAGCTTGCGAGCGAACGGTGGACACCTGTGCATACAgtaggttctt ... taacttgcagGTTGAAAGTATAGTTCTGAGCATCATTTCGATGCTCTCTAGTCCAAATGAT
EST: gi|3760646|gb|C97900.1|C97900
EST:     ATCCCAACGGTTATGAGCTTGCGAGCGAACGGTGGACACCTGTGCATACA                         GTTGAAAGTATAGTTCTGAGCATCATTTCGATGCTCTCTAGTCCAAATGAT
genomic: ATCCCAACGGTTATGAGCTTGCGAGCGAACGGTGGACACCTGTGCATACAgtaggttctt ... taacttgcagGTTGAAAGTATAGTTCTGAGCATCATTTCGATGCTCTCTAGTCCAAATGAT
EST: gi|86526293|gb|CI166499.1|CI166499
EST:     ATCCCAACGGTTATGAGCTTGCGAGCGAACGGTGGACACCTGTGCATACA                         GTTGAAAGTATAGTTCTGAGCATCATTTCGATGCTCTCTAGTCCAAATGAT
genomic: ATCCCAACGGTTATGAGCTTGCGAGCGAACGGTGGACACCTGTGCATACAgtaggttctt ... taacttgcagGTTGAAAGTATAGTTCTGAGCATCATTTCGATGCTCTCTAGTCCAAATGAT
EST: gi|33653883|gb|CF276497.1|CF276497
EST:     ATCCCAACGGTTATGAGCTTGCGAGCGAACGGTGGACACCTGTGCATACA                         GTTGAAAGTATAGTTCTGAGCATCATTTCGATGCTCTCTAGTCCAAATGAT
genomic: ATCCCAACGGTTATGAGCTTGCGAGCGAACGGTGGACACCTGTGCATACAgtaggttctt ... taacttgcagGTTGAAAGTATAGTTCTGAGCATCATTTCGATGCTCTCTAGTCCAAATGAT
EST: gi|58679873|gb|CK068560.1|CK068560
EST:     ATCCCAACGGTTATGAGCTTGCGAGCGAACGGTGGACACCTGTGCATACA                         GTTGAAAGTATAGTTCTGAGCATCATTTCGATGCTCTCTAGTCCAAATGAT
genomic: ATCCCAACGGTTATGAGCTTGCGAGCGAACGGTGGACACCTGTGCATACAgtaggttctt ... taacttgcagGTTGAAAGTATAGTTCTGAGCATCATTTCGATGCTCTCTAGTCCAAATGAT
EST: gi|88217686|gb|CI217535.1|CI217535
EST:     GGTTATGAGCTTGCGAGCGAACGGTGGACACCTGTGCATACA                         GTTGAAAGTATAGTTCTGAGCATCATTTCGATGCTCTCTAGTCCAAATGAT
genomic: GGTTATGAGCTTGCGAGCGAACGGTGGACACCTGTGCATACAgtaggttctt ... taacttgcagGTTGAAAGTATAGTTCTGAGCATCATTTCGATGCTCTCTAGTCCAAATGAT
EST: gi|89196201|gb|CI397203.1|CI397203
EST:     GGTTATGAGCTTGCGAGCGAACGGTGGACACCTGTGCATACA                         GTTGAAAGTATAGTTCTGAGCATCATTTCGATGCTCTCTAGTCCAAATGAT
genomic: GGTTATGAGCTTGCGAGCGAACGGTGGACACCTGTGCATACAgtaggttctt ... taacttgcagGTTGAAAGTATAGTTCTGAGCATCATTTCGATGCTCTCTAGTCCAAATGAT
EST: gi|15847906|gb|BI796182.1|BI796182
EST:     ATCCCAAC-GTTATGAGC-TGCGAGCGAACGGTGGACACCTGTGCATACA                         GTTGAAAGTATAGTTCTGAGCATCATTTCGATGCTCTCTAGTCCAAATGAT
genomic: ATCCCAACGGTTATGAGCTTGCGAGCGAACGGTGGACACCTGTGCATACAgtaggttctt ... taacttgcagGTTGAAAGTATAGTTCTGAGCATCATTTCGATGCTCTCTAGTCCAAATGAT
EST: gi|88849506|gb|CI089414.1|CI089414
EST:     ATCCCAACGGTTATGAGCTTGCGAGCGAACGGTGGACACCTGTGCATACA                         GTTGAAAGTATAGTTCTGAGCATCATTTCGATGCTCTCTAGTCCAAATGAT
genomic: ATCCCAACGGTTATGAGCTTGCGAGCGAACGGTGGACACCTGTGCATACAgtaggttctt ... taacttgcagGTTGAAAGTATAGTTCTGAGCATCATTTCGATGCTCTCTAGTCCAAATGAT
EST: gi|33658680|gb|CF281293.1|CF281293
EST:     ATCCCAACGGTTATGAGCTTGCGAGCGAACGGTGGACACCTGTGCATACA                         GTTGAAAGTATAGTTCTGAGCATCATTTCGATGCTCTCTAGTCCAAATGAT
genomic: ATCCCAACGGTTATGAGCTTGCGAGCGAACGGTGGACACCTGTGCATACAgtaggttctt ... taacttgcagGTTGAAAGTATAGTTCTGAGCATCATTTCGATGCTCTCTAGTCCAAATGAT
EST: gi|55827422|gb|AU030093.2|AU030093
EST:     TCCCAACGGTTATGAGCTTGCGAGCGAACGGTGGGACACCTGTGCATACA                         GTTTGAAAAGTATAGTTCTG
genomic: TCCCAACGGTTATGAGCTTGCGAGCGAACGGTGG-ACACCTGTGCATACAgtaggttctt ... taacttgcagGTT-GAAA-GTATAGTTCTG
EST: gi|33653639|gb|CF276253.1|CF276253
EST:     ATCCCAACGGTTATGAGCTTGCGAGCGAACGGTGGACACCTGTGCATACA                         GTTGAAAGTATAGTTCTGAGCATCATTTCGATGCTCTCTAGTCCAAATGAT
genomic: ATCCCAACGGTTATGAGCTTGCGAGCGAACGGTGGACACCTGTGCATACAgtaggttctt ... taacttgcagGTTGAAAGTATAGTTCTGAGCATCATTTCGATGCTCTCTAGTCCAAATGAT
EST: gi|88243626|gb|CI244023.1|CI244023
EST:     CCCAACGGTTATGAGCTTGCGAGCGAACGGTGGACACCTGTGCATACA                         GTTGAAAGTATAGTTCTGAGCATCATTTCGATGCTCTCTAGTCCAAATGAT
genomic: CCCAACGGTTATGAGCTTGCGAGCGAACGGTGGACACCTGTGCATACAgtaggttctt ... taacttgcagGTTGAAAGTATAGTTCTGAGCATCATTTCGATGCTCTCTAGTCCAAATGAT
EST: gi|38470738|gb|CF954869.1|CF954869
EST:     ATCCCAACGGTTATGAGCTTGCGAGCGAACGGTGGACACCTGTGCATACA                         GTTGAAAGTATAGTTCTGAGCATCATTTCGATGCTCTCTAGTCCAAATGAT
genomic: ATCCCAACGGTTATGAGCTTGCGAGCGAACGGTGGACACCTGTGCATACAgtaggttctt ... taacttgcagGTTGAAAGTATAGTTCTGAGCATCATTTCGATGCTCTCTAGTCCAAATGAT
EST: gi|86842441|gb|CI335317.1|CI335317
EST:     CTGTGCATACA                         GTTGAAAGTATAGTTCTGAGCATCATTTCGATGCTCTCTAGTCCAAATGAT
genomic: CTGTGCATACAgtaggttctt ... taacttgcagGTTGAAAGTATAGTTCTGAGCATCATTTCGATGCTCTCTAGTCCAAATGAT
EST: gi|33658073|gb|CF280687.1|CF280687
EST:     ATCCCAACGGTTATGAGCTTGCGAGCGAACGGTGGACACCTGTGCATACA                         GTTGAAAGTATAGTTCTGAGCATCATTTCGATGCTCTCTAGTCCAAATGAT
genomic: ATCCCAACGGTTATGAGCTTGCGAGCGAACGGTGGACACCTGTGCATACAgtaggttctt ... taacttgcagGTTGAAAGTATAGTTCTGAGCATCATTTCGATGCTCTCTAGTCCAAATGAT
EST: gi|86524483|gb|CI164689.1|CI164689
EST:     ATCCCAACGGTTATGAGCTTGCGAGCGAACGGTGGACACCTGTGCATACA                         GTTGAGAGTATAGTTCTGAGCATCATTTCGATGCTCTCTAGTCCAAATGAT
genomic: ATCCCAACGGTTATGAGCTTGCGAGCGAACGGTGGACACCTGTGCATACAgtaggttctt ... taacttgcagGTTGAAAGTATAGTTCTGAGCATCATTTCGATGCTCTCTAGTCCAAATGAT
EST: gi|58590916|gb|CF989224.1|CF989224
EST:     ATCCCAACGGTTATGAGCTTGCGAGCGAACGGTGGACACCTGTGCATACA                         GTTGAAAGTATAGTTCTGAGCATCATTTCGATGCTCTCTAGTCCAAATGAT
genomic: ATCCCAACGGTTATGAGCTTGCGAGCGAACGGTGGACACCTGTGCATACAgtaggttctt ... taacttgcagGTTGAAAGTATAGTTCTGAGCATCATTTCGATGCTCTCTAGTCCAAATGAT
EST: gi|32948017|gb|BP184589.1|BP184589
EST:     ATCCCAACGGTTATGAGCTTGCGAGCGAACGGTGGACACCTGTGCATACA                         GTTGAAAGTATAGTTCTGAGCATCATTTCGATGCTCTCTAGTCCAAATGAT
genomic: ATCCCAACGGTTATGAGCTTGCGAGCGAACGGTGGACACCTGTGCATACAgtaggttctt ... taacttgcagGTTGAAAGTATAGTTCTGAGCATCATTTCGATGCTCTCTAGTCCAAATGAT
EST: gi|286322|gb|D15130.1|D15130
EST:     ATCCCAACGGTTATGAGCTTGCGAGCGAACGGTGGACACCTGTGCATACA                         GTTGAAAGTATAGTTCTGAGCATCATTTCGATGCTCTCTAGTCCAAATGAT
genomic: ATCCCAACGGTTATGAGCTTGCGAGCGAACGGTGGACACCTGTGCATACAgtaggttctt ... taacttgcagGTTGAAAGTATAGTTCTGAGCATCATTTCGATGCTCTCTAGTCCAAATGAT
EST: gi|89168485|gb|CI038839.1|CI038839
EST:     ATCCCAACGGTTATGAGCTTGCGAGCGAACGGTGGACACCTGTGCATACA                         GTTGAAAGTATAGTTCTGAGCATCATTTCGATGCTCTCTAGTCCAAATGAT
genomic: ATCCCAACGGTTATGAGCTTGCGAGCGAACGGTGGACACCTGTGCATACAgtaggttctt ... taacttgcagGTTGAAAGTATAGTTCTGAGCATCATTTCGATGCTCTCTAGTCCAAATGAT
EST: gi|33687042|gb|CF315281.1|CF315281
EST:     ATCCCAACGGTTATGAGCTTGCGAGCGAACGGTGGACACCTGTGCATACA                         GTTGAAAGTATAGTTCTGAGCATCATTTCGATGCTCTCTAGTCCAAATGAT
genomic: ATCCCAACGGTTATGAGCTTGCGAGCGAACGGTGGACACCTGTGCATACAgtaggttctt ... taacttgcagGTTGAAAGTATAGTTCTGAGCATCATTTCGATGCTCTCTAGTCCAAATGAT
EST: gi|313079586|gb|HO213144.1|HO213144
EST:     ATCCCAACGGTTATGAGCTTGCGAGCGAACGGTGGACACCTGTGCATATA                         GTTGAAAGTATAGTTCTGAGCATCATTTCGATGCTCTCTAGTCCAAATGAT
genomic: ATCCCAACGGTTATGAGCTTGCGAGCGAACGGTGGACACCTGTGCATACAgtaggttctt ... taacttgcagGTTGAAAGTATAGTTCTGAGCATCATTTCGATGCTCTCTAGTCCAAATGAT
EST: gi|33690680|gb|CF318919.1|CF318919
EST:     ATCCCAACGGTTATGAGCTTGCGAGCGAACGGTGGACACCTGTGCATACA                         GTTGAAAGTATAGTTCTGAGCATCATTTCGATGCTCTCTAGTCCAAATGAT
genomic: ATCCCAACGGTTATGAGCTTGCGAGCGAACGGTGGACACCTGTGCATACAgtaggttctt ... taacttgcagGTTGAAAGTATAGTTCTGAGCATCATTTCGATGCTCTCTAGTCCAAATGAT
EST: gi|86509843|gb|CI152476.1|CI152476
EST:     ATCCCAACGGTTATGAGCTTGCGAGCGAACGGTGGACACCTGTGCATACA                         GTTGAAAGTATAGTTCTGAGCATCATTTCGATGCTCTCTAGTCCAAATGAT
genomic: ATCCCAACGGTTATGAGCTTGCGAGCGAACGGTGGACACCTGTGCATACAgtaggttctt ... taacttgcagGTTGAAAGTATAGTTCTGAGCATCATTTCGATGCTCTCTAGTCCAAATGAT
EST: gi|55431282|gb|CV728654.1|CV728654
EST:     ATCCCAACGGTTATGAGCTTGCGAGCGAACGGTGGACACCTGTGCATACA                         GTTGAAAGTATAGTTCTGAGCATCATTTCGATGCTCTCTAGTCCAAATGAT
genomic: ATCCCAACGGTTATGAGCTTGCGAGCGAACGGTGGACACCTGTGCATACAgtaggttctt ... taacttgcagGTTGAAAGTATAGTTCTGAGCATCATTTCGATGCTCTCTAGTCCAAATGAT
EST: gi|29688854|gb|CB685129.1|CB685129
EST:     ATCCCAACGGTTATGAGCTTGCGAGCGAACGGTGGACACCTGTGCATACA                         GTTGAAAGTATAGTTCTGAGCATCATTTCGATGCTCTCTAGTCCAAATGAT
genomic: ATCCCAACGGTTATGAGCTTGCGAGCGAACGGTGGACACCTGTGCATACAgtaggttctt ... taacttgcagGTTGAAAGTATAGTTCTGAGCATCATTTCGATGCTCTCTAGTCCAAATGAT
EST: gi|8857894|gb|AU095212.1|AU095212
EST:     ATCCCAACGGTTATGAGCTTGCGAGCGAACGGTGGACACCTGTGCATACA                         GTTGAAAGTATAGTTCTGAGC
genomic: ATCCCAACGGTTATGAGCTTGCGAGCGAACGGTGGACACCTGTGCATACAgtaggttctt ... taacttgcagGTTGAAAGTATAGTTCTGAGC
EST: gi|88257783|gb|CI360369.1|CI360369
EST:     ACCTGTGCATACA                         GTTGAAAGTATAGTTCTGAGCATCATTTCGATGCTCTCTAGTCCAAATGAT
genomic: ACCTGTGCATACAgtaggttctt ... taacttgcagGTTGAAAGTATAGTTCTGAGCATCATTTCGATGCTCTCTAGTCCAAATGAT
EST: gi|86822730|gb|CI251810.1|CI251810
EST:     ATCCCAACGGTTATGAGCTTGCGAGCGAACGGTGGACACCTGTGCATACA                         GTTGAAAGTATAGTTCTGAGCATCATTTCGATGCTCCCTAGTCCAAATGAT
genomic: ATCCCAACGGTTATGAGCTTGCGAGCGAACGGTGGACACCTGTGCATACAgtaggttctt ... taacttgcagGTTGAAAGTATAGTTCTGAGCATCATTTCGATGCTCTCTAGTCCAAATGAT
EST: gi|86430741|gb|CI083164.1|CI083164
EST:     ATCCCAACGGTTATGAGCTTGCGAGCGAACGGTGGACACCTGTGCATACA                         GTTGAAAGTATAGTTCTGAGCATCATTTCGATGCTCTCTAGTCCAAATGAT
genomic: ATCCCAACGGTTATGAGCTTGCGAGCGAACGGTGGACACCTGTGCATACAgtaggttctt ... taacttgcagGTTGAAAGTATAGTTCTGAGCATCATTTCGATGCTCTCTAGTCCAAATGAT
EST: gi|33659205|gb|CF281818.1|CF281818
EST:     ATCCCAACGGTTATGAGCTTGCGAGCGAACGGTGGACACCTGTGCATACA                         GTTGAAAGTATAGTTCTGAGCATCATTTCGATGCTCTCTAGTCCAAATGAT
genomic: ATCCCAACGGTTATGAGCTTGCGAGCGAACGGTGGACACCTGTGCATACAgtaggttctt ... taacttgcagGTTGAAAGTATAGTTCTGAGCATCATTTCGATGCTCTCTAGTCCAAATGAT
EST: gi|29680263|gb|CB676538.1|CB676538
EST:     ATCCCAACGGTTATGAGCTTGCGAGCGAACGGTGGACACCTGTGCATACA                         GTTGAAAGTATAGTTCTGAGCATCATTTCGATGCTCTCTAGTCCAAATGAT
genomic: ATCCCAACGGTTATGAGCTTGCGAGCGAACGGTGGACACCTGTGCATACAgtaggttctt ... taacttgcagGTTGAAAGTATAGTTCTGAGCATCATTTCGATGCTCTCTAGTCCAAATGAT
EST: gi|33658853|gb|CF281466.1|CF281466
EST:     ATCCCAACGGTTATGAGCTTGCGAGCGAACGGTGGACACCTGTGCATACA                         GTTGAAAGTATAGTTCTGAGCATCATTTCGATGCTCTCT
genomic: ATCCCAACGGTTATGAGCTTGCGAGCGAACGGTGGACACCTGTGCATACAgtaggttctt ... taacttgcagGTTGAAAGTATAGTTCTGAGCATCATTTCGATGCTCTCT
EST: gi|22306772|gb|BQ907994.1|BQ907994
EST:     ATCCCAACGGTTATGAGCTTGCGAGCGAACGGTGGACACCTGTGCATACA                         GTTGAAAGTATAGTTCTGAGCATCATTTCGATGCTCTCTAGTCCACAATGA
genomic: ATCCCAACGGTTATGAGCTTGCGAGCGAACGGTGGACACCTGTGCATACAgtaggttctt ... taacttgcagGTTGAAAGTATAGTTCTGAGCATCATTTCGATGCTCTCTAGTCCA-AATGA
EST: gi|66916172|gb|CX103020.1|CX103020
EST:     ATCCCAACGGTTATGAGCTTGCGAGCGAACGGTGGACACCTGTGCATACA                         GTTGAAAGTATAGTTCTGAGCATCATTTCGATGCTCTCTAGTCCAAATGAT
genomic: ATCCCAACGGTTATGAGCTTGCGAGCGAACGGTGGACACCTGTGCATACAgtaggttctt ... taacttgcagGTTGAAAGTATAGTTCTGAGCATCATTTCGATGCTCTCTAGTCCAAATGAT
EST: gi|33658681|gb|CF281294.1|CF281294
EST:     ATCCCAACGGTTATGAGCTTGCGAGCGAACGGTGGACACCTGTGCATACA                         GTTGAAAGTATAGTTCTGAGCATCATTTCGATGCTCTCTAGTCCAAATGAT
genomic: ATCCCAACGGTTATGAGCTTGCGAGCGAACGGTGGACACCTGTGCATACAgtaggttctt ... taacttgcagGTTGAAAGTATAGTTCTGAGCATCATTTCGATGCTCTCTAGTCCAAATGAT
EST: gi|33654769|gb|CF277383.1|CF277383
EST:     GCTTGCGAGCGAACGGTGGACACCTGTGCATACA                         GTTGAAAGTATAGTTCTGAGCATCATTTCGATGCTCTCTAGTCCAAATGAT
genomic: GCTTGCGAGCGAACGGTGGACACCTGTGCATACAgtaggttctt ... taacttgcagGTTGAAAGTATAGTTCTGAGCATCATTTCGATGCTCTCTAGTCCAAATGAT
EST: gi|86524276|gb|CI164482.1|CI164482
EST:     ATCCCAACGGTTATGAGCTTGCGAGCGAACGGTGGACACCTGTGCATACA                         GTTGAAAGTATAGTTCTGAGCATCATTTCGATGCTCTCTAGTCCAAATGAT
genomic: ATCCCAACGGTTATGAGCTTGCGAGCGAACGGTGGACACCTGTGCATACAgtaggttctt ... taacttgcagGTTGAAAGTATAGTTCTGAGCATCATTTCGATGCTCTCTAGTCCAAATGAT
EST: gi|4880952|gb|AU065251.1|AU065251
EST:     TCCCAACGGTTATGGAGCTTGCGAGCGAACGGTGGACACCTGTGCATACA                         GTTGAAAGTATAGTTCTGAGCATCATTTCGATGCTCTCTAGTCCAAATGAT
genomic: TCCCAACGGTTATG-AGCTTGCGAGCGAACGGTGGACACCTGTGCATACAgtaggttctt ... taacttgcagGTTGAAAGTATAGTTCTGAGCATCATTTCGATGCTCTCTAGTCCAAATGAT
EST: gi|33687043|gb|CF315282.1|CF315282
EST:     GTTATGAGCTTGCGAGCGAACGGTGGACACCTGTGCATACA                         GTTGAAAGTATAGTTCTGAGCATCATTTCGATGCTCTCTAGTCCAAATGAT
genomic: GTTATGAGCTTGCGAGCGAACGGTGGACACCTGTGCATACAgtaggttctt ... taacttgcagGTTGAAAGTATAGTTCTGAGCATCATTTCGATGCTCTCTAGTCCAAATGAT
EST: gi|88506729|gb|CI434235.1|CI434235
EST:     ATCCCAACGGTTATGAGCTTGCGAGCGAACGGTGGACACCTGTGCATACA                         GTTGAAAGTATAGTTCTGAGCATCATTTCGATGCTCTCTAGTCCAAATGAT
genomic: ATCCCAACGGTTATGAGCTTGCGAGCGAACGGTGGACACCTGTGCATACAgtaggttctt ... taacttgcagGTTGAAAGTATAGTTCTGAGCATCATTTCGATGCTCTCTAGTCCAAATGAT
EST: gi|33658854|gb|CF281467.1|CF281467
EST:     ATCCCAACGGTTATGAGCTTGCGAGCGAACGGTGGACACCTGTGCATACA                         GTTGAAAGTATAGTTCTGAGCATCATTTCGATGCTCTCTAGTCCAAATGAT
genomic: ATCCCAACGGTTATGAGCTTGCGAGCGAACGGTGGACACCTGTGCATACAgtaggttctt ... taacttgcagGTTGAAAGTATAGTTCTGAGCATCATTTCGATGCTCTCTAGTCCAAATGAT
EST: gi|87023663|gb|CI286414.1|CI286414
EST:     ATCCCAACGGTTATGAGCTTGCGAGCGAACGGTGGACACCTGTGCATACA                         GTTGAAAGTATAGTTCTGAGCATCATTTCGATGCTCTCTAGTCCAA
genomic: ATCCCAACGGTTATGAGCTTGCGAGCGAACGGTGGACACCTGTGCATACAgtaggttctt ... taacttgcagGTTGAAAGTATAGTTCTGAGCATCATTTCGATGCTCTCTAGTCCAA
EST: gi|86432288|gb|CI085899.1|CI085899
EST:     ATCCCAACGGTTATGAGCTTGCGAGCGAACGGTGGACACCTGTGCATACA                         GCTGAAAGTATAGTTCTGAGCATCATTTCGATGCTCTCTAGTCCAAATGAT
genomic: ATCCCAACGGTTATGAGCTTGCGAGCGAACGGTGGACACCTGTGCATACAgtaggttctt ... taacttgcagGTTGAAAGTATAGTTCTGAGCATCATTTCGATGCTCTCTAGTCCAAATGAT
EST: gi|29616092|gb|CB621104.1|CB621104
EST:     ATCCCAACGGTTATGAGCTTGCGAGCGAACGGTGGACACCTGTGCATACA                         GTTGAAAGTATAGTTCTGAGCATCATTTCGATGCTCTCTAGTCCAAATGAT
genomic: ATCCCAACGGTTATGAGCTTGCGAGCGAACGGTGGACACCTGTGCATACAgtaggttctt ... taacttgcagGTTGAAAGTATAGTTCTGAGCATCATTTCGATGCTCTCTAGTCCAAATGAT
EST: gi|86863021|gb|CI332379.1|CI332379
EST:     GACACCTGTGCATACA                         GTTGAAAGTATAGTTCTGAGCATCATTTCGATGCTCTCTAGTCCAAATGAT
genomic: GACACCTGTGCATACAgtaggttctt ... taacttgcagGTTGAAAGTATAGTTCTGAGCATCATTTCGATGCTCTCTAGTCCAAATGAT
EST: gi|55414097|gb|CV726473.1|CV726473
EST:     GGACACCTGTGCATACA                         GTTGAAAGTATAGTTCTGGGCATCATTTCGATGCTCTCTAGTCCAAATGAT
genomic: GGACACCTGTGCATACAgtaggttctt ... taacttgcagGTTGAAAGTATAGTTCTGAGCATCATTTCGATGCTCTCTAGTCCAAATGAT
EST: gi|88205831|gb|CI205680.1|CI205680
EST:     ATCCCAACGGTTATGAGCTTGCGAGCGAACGGTGGACACCTGTGCATACA                         GTTGAAAGTATAGTTCTGAGCATCATTTCGATGCTCTCTAGTCCAAATGAT
genomic: ATCCCAACGGTTATGAGCTTGCGAGCGAACGGTGGACACCTGTGCATACAgtaggttctt ... taacttgcagGTTGAAAGTATAGTTCTGAGCATCATTTCGATGCTCTCTAGTCCAAATGAT
EST: gi|29685176|gb|CB681451.1|CB681451
EST:     ATCCCAACGGTTATGAGCTTGCGAGCGAACGGTGGACACCTGTGCATACA                         GTTGAAAGTATAGTTCTGAGCATCATTTCGATGCTCTCTAGTCCAAATGAT
genomic: ATCCCAACGGTTATGAGCTTGCGAGCGAACGGTGGACACCTGTGCATACAgtaggttctt ... taacttgcagGTTGAAAGTATAGTTCTGAGCATCATTTCGATGCTCTCTAGTCCAAATGAT
EST: gi|33655754|gb|CF278368.1|CF278368
EST:     ATCCCAACGGTTATGAGCTTGCGAGCGAACGGTGGACACCTGTGCATACA                         GTTGAAAGTATAGTTCTGAGCATCATTTCGATGCTCTCTAGTCCAAATGAT
genomic: ATCCCAACGGTTATGAGCTTGCGAGCGAACGGTGGACACCTGTGCATACAgtaggttctt ... taacttgcagGTTGAAAGTATAGTTCTGAGCATCATTTCGATGCTCTCTAGTCCAAATGAT
EST: gi|33691669|gb|CF319908.1|CF319908
EST:     ATCCCAACGGTTATGAGCTTGCGAGCGAACGGTGGACACCTGTGCATACA                         GTTGAAAGTATTAGTTCTGAGCATCATTTCGATGCTCTCTAGTCCAAAGGA
genomic: ATCCCAACGGTTATGAGCTTGCGAGCGAACGGTGGACACCTGTGCATACAgtaggttctt ... taacttgcagGTTGAAAGTAT-AGTTCTGAGCATCATTTCGATGCTCTCTAGTCCAAATGA
EST: gi|29684701|gb|CB680976.1|CB680976
EST:     ATCCCAACGGTTATGAGCTTGCGAGCGAACGGTGGACACCTGTGCATACA                         GTTGAAAGTATAGTTCTGAGCATCATTTCGATGCTCTCTAGTCCAAATGAT
genomic: ATCCCAACGGTTATGAGCTTGCGAGCGAACGGTGGACACCTGTGCATACAgtaggttctt ... taacttgcagGTTGAAAGTATAGTTCTGAGCATCATTTCGATGCTCTCTAGTCCAAATGAT
EST: gi|29685177|gb|CB681452.1|CB681452
EST:     ATCCCAACGGTTATGAGCTTGCGAGCGAACGGTGGACACCTGTGCATACA                         GTTGAAAGTATAGTTCTGAGCATCATTTCGATGCTCTCTAGTCCAAATGAT
genomic: ATCCCAACGGTTATGAGCTTGCGAGCGAACGGTGGACACCTGTGCATACAgtaggttctt ... taacttgcagGTTGAAAGTATAGTTCTGAGCATCATTTCGATGCTCTCTAGTCCAAATGAT
EST: gi|33692576|gb|CF320815.1|CF320815
EST:     ATCCCAACGGTTATGAGCTTGCGAGCGAACGGTGGACACCTGTGCATACA                         GTTGAAAGTATAGTTCTGAGCATCATTTCGATGCTCTCTAGTCCAAATGAT
genomic: ATCCCAACGGTTATGAGCTTGCGAGCGAACGGTGGACACCTGTGCATACAgtaggttctt ... taacttgcagGTTGAAAGTATAGTTCTGAGCATCATTTCGATGCTCTCTAGTCCAAATGAT
EST: gi|33654768|gb|CF277382.1|CF277382
EST:     ATCCCAACGGTTATGAGCTTGCGAGCGAACGGTGGACACCTGTGCATACA                         GTTGAAANGTATAGTTCTGAGCATCATTTCGATGCTCTCTAGTCCAAATGA
genomic: ATCCCAACGGTTATGAGCTTGCGAGCGAACGGTGGACACCTGTGCATACAgtaggttctt ... taacttgcagGTTGAAA-GTATAGTTCTGAGCATCATTTCGATGCTCTCTAGTCCAAATGA
EST: gi|29684702|gb|CB680977.1|CB680977
EST:     ATCCCAACGGTTATGAGCTTGCGAGCGAACGGTGGACACCTGTGCATACA                         GTTGAAAGTATAGTTCTGAGCATCATTTCGATGCTCTCTAGTCCAAATGAT
genomic: ATCCCAACGGTTATGAGCTTGCGAGCGAACGGTGGACACCTGTGCATACAgtaggttctt ... taacttgcagGTTGAAAGTATAGTTCTGAGCATCATTTCGATGCTCTCTAGTCCAAATGAT
EST: gi|29688855|gb|CB685130.1|CB685130
EST:     ATCCCAACGGTTATGAGCTTGCGAGCGAACGGTGGACACCTGTGCATACA                         GTTGAAAGTATAGTTTTGAGCATCATTTCGATGCTCTCTAGTCCAAATGAT
genomic: ATCCCAACGGTTATGAGCTTGCGAGCGAACGGTGGACACCTGTGCATACAgtaggttctt ... taacttgcagGTTGAAAGTATAGTTCTGAGCATCATTTCGATGCTCTCTAGTCCAAATGAT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 75 (upstream exon), 75 (downstream exon)
Score: 156

TTATCCTGATGGGCGCGTATGCATTTCTATCCTTCATCCACCTGGCGAAGATCCCAACGGTTATGAGCTTGCGAGCGAACGGTGGACACCTGTGCATACAgtaggttctt ... taacttgcagGTTGAAAGTATAGTTCTGAGCATCATTTCGATGCTCTCTAGTCCAAATGATGAGTCTCCAGCAAATATTGAAGCGGCT




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aagatttgtggtcaattattttcttgctaaattattttgtgcttgtaacttgcagGTTGAAAGTATAGTTCTGAGCATCATTTCGATGCTCTCTAGTCCAAATGATGAGTCTCCAGCAAATATTGAAGCGGCT
                                          ttgtaac  putative branch site (score: 156)
           tcaattattttcttgc  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
aattcattttggaggcttggcgcgcacttatcagtgttaatttggaagatttgtggtcaattattttcttgctaaattattttgtgcttgtaacttgcagGTTGAAAGTATAGTTCTGAGCATCATTTCGATGCTCTCTAGTCCAAATGATGAGTCTCCAGCAAATATTGAAGCGGCT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - -tggaggc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtgcttg