Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aagagacatagaaccggaagtgtaatagctgctgtcataactgtatttattgcacatatcctcagaatcacatctgacaacgataacatttgtttcacagATGTGGATCTCCAAGGGCGAGTATGATGAATCTGGTCCTGGCATTGTCCATATGAAGTGCTTCTGAGCTTCTTGCCAAGTTTGTAGAGCGGTATTTCAAG

Basic information

species Oryza sativa
transcript LOC_Os05g36290.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os05g36290.1 (Oryza sativa), 3'ss of exon 4
lower sequence: GRMZM2G126010_T01 (Zea mays), 3'ss of exon 4
-----aagagacatagaaccggaagtgtaatagctgctgtcataact-gtatttattgcacatatcctcagaatcacatctgacaacgataacatttgtttcacagATGTGGATCTCCAAGGGCGAGTATGATGAATCTGGTCCTGGCATTGTCCATATGAAGTGCTTCTGAGCTTCTT-GCCAAGTTTGTAGAGCGGTATTTCAAG
      || |  |||| |||| |  | |         || ||| ||| | | | |||      ||       ||  | | |||||| |   |  | ||||   |||||||||||||||||||| |||||||| ||| ||||||| ||||||||||| ||||||||||||| || || || |  || ||| |  |     |     | 
attactagtgtgatagcaccgaatatttttcttgcattgccattacttgcactcattattttaatttc----atttc-tttgacaatgggcaactgtgttg-gcagATGTGGATCTCCAAGGGAGAGTATGACGAAACTGGTCCGGGCATTGTCCACATGAAGTGCTTCTAAGTTTTTTTGGGAAATTTTTCCAAAAAAAAAAAGA-

upper sequence: LOC_Os05g36290.1 (Oryza sativa), 3'ss of exon 4
lower sequence: GLYMA08G19420.1 (Glycine max), 3'ss of exon 4
------------------------------aagagacatagaaccggaagtgtaatagctgctgtcataactgtatttattgcacatatcctca-gaatcacatctgacaacgataacatttgttt---cacagATGTGGATCTCCAAGGGCGAGTATGATGAATCTGGTCCTGGCATTGTCCATATGAAGTGCTTCTGAGCTTCTTGCCAAGTTTGTAGAGCGGT--ATTTCAAG
                                   ||||    ||       |     ||       ||  |  |  ||      ||    | | | |   |||         |     ||   ||     |||||||||||||| |||||||| |||||||||||||| || |  || || |||  ||||||||||| || |   | | |    || |  | | |  | |||   
gtttgtactgatgttttttccccctcctattctcaacatcccccctcccacctcccccctttatgtgtacttacaagtaaaatgtattagtttatggaaagcattgagtgtttactttgttctcttatatgcagATGTGGATCTCTAAGGGCGAATATGATGAATCTGGGCCAGCTATCGTTCATCGGAAGTGCTTCTAAGTTGGGT-CAAGAGCTGGATGGTGATCAAGTTCTT-

upper sequence: LOC_Os05g36290.1 (Oryza sativa), 3'ss of exon 4
lower sequence: GLYMA04G39380.1 (Glycine max), 3'ss of exon 4
aagagacatagaaccggaagtgtaatagctgctgtcataactgtatttattgcacatatcctcagaatcacatctgacaacgataacatttgtttcacagATGTGGATCTCCAAGGGCGAGTATGATGAATCTGGTCCTGGCATTGTCCATATGAAGTGCTTCTGAGCTTCTTGCCAAGTTTGTAGAGCGGTATTTCAAG--
               |  | |||  |   |  ||  |  | | | | |    ||| | | |    ||| | ||   || |        || ||||  ||||||||||| || ||||| || |||||||| ||||||||   ||||||||| | ||||||||||| ||  ||      |  |  |  |  |||   | | |  
---------------gtgattgttttgtttattgcaa--attatctcttccacacgtgtacc---aattagattgaactaaacatgttttggttttgcagATGTGGATATCGAAGGGTGAATATGATGAGTCTGGTCCATCCATTGTCCACAGGAAGTGCTTCTAAG--TCCAAAAGAAATGCTTTAATGGTGAGTTATGTT

upper sequence: LOC_Os05g36290.1 (Oryza sativa), 3'ss of exon 4
lower sequence: GLYMA15G05570.1 (Glycine max), 3'ss of exon 4
-----------------------aagagacatagaaccggaagtgtaatagctgctgtcat--aactgtatttattgcacatatcctcagaatcacatctgacaacgataacatttgtttcacagATGTGGATCTCCAAGGGCGAGTATGATGAATCTGGTCCTGGCATTGTCCATATGAAGTGCTTCTGAGCTTCTTGCCAAGTTT-GTAGAGCGGTATTTCAAG-
                          |  |  |  | |        | | | |  |   |   || ||||||  ||  |   |      | ||    | ||   ||  |    | |  |    ||||||||||||||||||| || |||||||||||||| || | ||| || |||  ||||||||||| |  ||   | |||||   |  |   |||  | |||| 
gtttgtactgatgtttttttcctgctattctcaacatccccccctcatttgttcttacaagtaaaatgtattagtt-tatggaaggcaggtattgagtgtg--tactttgttctcttatatgtagATGTGGATCTCCAAGGGTGAATATGATGAATCTGGGCCAGCCATCGTTCATCGGAAGTGCTTCTAAAGTTGG-GTCAAGTCGAGCTGGATGGTGAT-CAAGT

upper sequence: LOC_Os05g36290.1 (Oryza sativa), 3'ss of exon 4
lower sequence: AT3G18780.2 (Arabidopsis thaliana), 3'ss of exon 3
aagagacatagaaccggaagtgtaatagctgctgtcataactgtatttattgcacatatcctcagaatcacatctgacaacgataacatttgtt--tcacagATGTGGATCTCCAAGGGCGAGTATGATGAATCTGGTCCTGGCATTGTCCATATGAAGTGCTTCTGAGCTTCT----TGCCAAGTTTGTAGAGCGGTATTTCAAG
                 || |  |  || |  |||    | |   | | || ||   |   | | |   |   ||||  |       || ||||  | |||||||||||||||||||| ||||||||||||  | ||||| || || || || |  || || |||| ||||       |   | | ||  | ||| |   ||    
-------------gtaaaaattgatcagattttgtttcgaat---tctcttacatgcaaattgaaatcaaaggctgattatttatgtatatgttggttacagATGTGGATCTCCAAGGCCGAGTATGATGAGGCAGGTCCAGGAATCGTTCACAGAAAATGTTTCTAAGCTCTCAAGATCAAAGGCTTAAAAAGCTGGGGTT----

upper sequence: LOC_Os05g36290.1 (Oryza sativa), 3'ss of exon 4
lower sequence: AT1G49240.1 (Arabidopsis thaliana), 3'ss of exon 4
aagagacatagaaccggaagtgt--aatagctgctg-tcataactgtatttattgcacata--tcctcagaa---tcacatctgacaacgata-acatttgtttca-cagATGTGGATCTCCAAGGGCGAGTATGATGAATCTGGTCCTGGCATTGTCCATATGAAGTGCTTCTGAGCTTCTTGCCAA--GTTTGTAGAGCGGTATTTCAAG
  |  | || | || |  | |    | |   ||||  |  |   || ||| | || | | |  |||||  |    | |||| |        |     | ||| | | |||||||||||||| ||||  |||||||||||| | ||||| ||||||||||| |  || ||||||| | ||        |  ||||  |   ||| ||  ||  
--gtaaaattggactgtcatttctaagtttttgcttcttgtggttg-attaaatgtagacaactcctctaatggtttacattttctgtgtgtgtgtgtgtgtgtaatcagATGTGGATCTCTAAGGCAGAGTATGATGAAGCAGGTCCAGGCATTGTCCACAGAAAATGCTTCTAAACTAAAGAGACATCGTTTCCATGACGGGATCACA--

upper sequence: LOC_Os05g36290.1 (Oryza sativa), 3'ss of exon 4
lower sequence: Vv04s0044g00580.t01 (Vitis vinifera), 3'ss of exon 5
aagagacatagaaccggaagtgtaatagctgctgtcataactgtatttattgcacatatcctcagaatcacatctgacaacgataacatttgtttc------acagATGTGGATCTCCAAGGGCGAGTATGATGAATCTGGTCCTGGCATTGTCCATATGAAGTGCTTCTGAGCTTCTTGCCAAGTTTG-TAGAGCGGTATTTCAAG
                     || ||      | |  |   | |  || || || ||    | |   |   ||   |  |   ||||||   |||       ||||||||||||||| ||||| || |||||||||||||||||   ||||||||| | ||||||||||| ||            |||| | | | | |  ||    
---------------------gtgattttcatt-ttttgtttttggtttttacaaatggtttgattcttttattgcatgatactaacatgctttttgttggtacagATGTGGATCTCAAAGGGTGAATATGATGAATCTGGTCCATCCATTGTCCACAGGAAGTGCTTCTAAGTAATACAAGTGCTTTGATGGTGAGTTCCTTTTT-

upper sequence: LOC_Os05g36290.1 (Oryza sativa), 3'ss of exon 4
lower sequence: Vv12s0178g00200.t01 (Vitis vinifera), 3'ss of exon 3
aagagacatagaaccggaagtgtaatagctgctgtcataactgtatttattgcacatatcctcagaatcacatctgacaacgataacatttgtt--tcacagATGTGGATCTCCAAGGGCGAGTATGATGAATCTGGTCCTGGCATTGTCCATATGAAGTGCTTCTGAGCTTCTTGCCAAGTTTGTAGAGCGGTATTTCAAG
   | | || |        |||     | ||  |    ||   || | |  |    | |  |     |    || ||     ||  |||||     |  ||||||||||| |||||||| || || |||||||| ||||||| |||||| || | ||||||||||| |  |                               
gtaaaaaattgttttatttgtgcccatgatgtgggtggaatgatagtcaaggagtttgtgattgt--tagtctcagagtctcattccatttaaaaattgcagATGTGGATATCCAAGGGTGAATACGATGAATCCGGTCCTGCCATTGTTCACAGGAAGTGCTTCTAATTT-------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86853602|gb|CI330453.1|CI330453
EST:     GCGTCTGGATTGGTGGTTCTATTTTGGCTTCTCTTAGCACTTTCCAGCAG                         ATGTGGATCTCCAAGGGCGAGTATGATGAATCTGGTCCTGGCATTGTCCAT
genomic: GCGTCTGGATTGGTGGTTCTATTTTGGCTTCTCTTAGCACTTTCCAGCAGgtagggtttt ... tgtttcacagATGTGGATCTCCAAGGGCGAGTATGATGAATCTGGTCCTGGCATTGTCCAT
EST: gi|33684050|gb|CF312289.1|CF312289
EST:     GCGTCTGGATTGGTGGTTCTATTTTGGCTTCTCTTAGCACTTTCCAGCAG                         ATGTGGATCTCCAAGGGCGAGTATGATGAATCTGGTCCTGGCATTGTCCAT
genomic: GCGTCTGGATTGGTGGTTCTATTTTGGCTTCTCTTAGCACTTTCCAGCAGgtagggtttt ... tgtttcacagATGTGGATCTCCAAGGGCGAGTATGATGAATCTGGTCCTGGCATTGTCCAT
EST: gi|88829680|gb|CI074550.1|CI074550
EST:     GCGTCTGGATTGGTGGTTCTATTTTGGCTTCTCTTAGCACTTTCCAGCAG                         ATGTGGATCTCCAAGGGCGAGTATGATGAATCTGGTCCTGGCATTGTCCAT
genomic: GCGTCTGGATTGGTGGTTCTATTTTGGCTTCTCTTAGCACTTTCCAGCAGgtagggtttt ... tgtttcacagATGTGGATCTCCAAGGGCGAGTATGATGAATCTGGTCCTGGCATTGTCCAT
EST: gi|86427427|gb|CI072524.1|CI072524
EST:     GCGTCTGGATTGGTGGTTCTATTTTGGCTTCTCTTAGCACTTTCCAGCAG                         ATGTGGATCTCCAAGGGCGAGTATGATGAATCTGGTCCTGGCATTGTCCAT
genomic: GCGTCTGGATTGGTGGTTCTATTTTGGCTTCTCTTAGCACTTTCCAGCAGgtagggtttt ... tgtttcacagATGTGGATCTCCAAGGGCGAGTATGATGAATCTGGTCCTGGCATTGTCCAT
EST: gi|33691170|gb|CF319409.1|CF319409
EST:     GCGTCTGGATTGGTGGTTCTATTTTGGCTTCTCTTAGCACTTTCCAGCAG                         ATGTGGATCTCCAAGGGCGAGTATGATGAATCTGGTCCTGGCATTGTCCAT
genomic: GCGTCTGGATTGGTGGTTCTATTTTGGCTTCTCTTAGCACTTTCCAGCAGgtagggtttt ... tgtttcacagATGTGGATCTCCAAGGGCGAGTATGATGAATCTGGTCCTGGCATTGTCCAT
EST: gi|33681941|gb|CF310180.1|CF310180
EST:     GCGTCTGGATTGGTGGTTCTATTTTGGCTTCTCTTAGCACTTTCCAGCAG                         ATGTGGATCTCCAAGGGCGAGTATGATGAATCTGGTCCTGGCATTGTCCAT
genomic: GCGTCTGGATTGGTGGTTCTATTTTGGCTTCTCTTAGCACTTTCCAGCAGgtagggtttt ... tgtttcacagATGTGGATCTCCAAGGGCGAGTATGATGAATCTGGTCCTGGCATTGTCCAT
EST: gi|86599852|gb|CI256014.1|CI256014
EST:     GCGTCTGGATTGGTGGTTCTATTTTGGCTTCTCTTAGCACTTTCCAGCAG                         ATGTGGATCTCCAAGGGCGAGTATGATGAATCTGGTCCTGGCATTGTCCAT
genomic: GCGTCTGGATTGGTGGTTCTATTTTGGCTTCTCTTAGCACTTTCCAGCAGgtagggtttt ... tgtttcacagATGTGGATCTCCAAGGGCGAGTATGATGAATCTGGTCCTGGCATTGTCCAT
EST: gi|218491190|gb|FG970011.1|FG970011
EST:     GCGTCTGGATTGGTGGTTCTATTTTGGCTTCTCTTAGCACTTTCCAGCAG                         ATGTGGATCTCCAAGGGCGAGTATGATGAATCTGGTCCTGGCATTGTCCAT
genomic: GCGTCTGGATTGGTGGTTCTATTTTGGCTTCTCTTAGCACTTTCCAGCAGgtagggtttt ... tgtttcacagATGTGGATCTCCAAGGGCGAGTATGATGAATCTGGTCCTGGCATTGTCCAT
EST: gi|88837806|gb|CI079166.1|CI079166
EST:     GCGTCTGGATTGGTGGTTCTATTTTGGCTTCTCTTAGCACTTTCCAGCAG                         ATGTGGATCTCCAAGGGCGAGTATGATGAATCTGGTCCTGGCATTGTCCAT
genomic: GCGTCTGGATTGGTGGTTCTATTTTGGCTTCTCTTAGCACTTTCCAGCAGgtagggtttt ... tgtttcacagATGTGGATCTCCAAGGGCGAGTATGATGAATCTGGTCCTGGCATTGTCCAT
EST: gi|88831223|gb|CI082033.1|CI082033
EST:     GCGTCTGGATTGGTGGTTCTATTTTGGCTTCTCTTAGCACTTTCCAGCAG                         ATGTGGATCTCC-AGGGCGAGTATGATGAATCTGGTCCTGGCATTGTCCAT
genomic: GCGTCTGGATTGGTGGTTCTATTTTGGCTTCTCTTAGCACTTTCCAGCAGgtagggtttt ... tgtttcacagATGTGGATCTCCAAGGGCGAGTATGATGAATCTGGTCCTGGCATTGTCCAT
EST: gi|88215641|gb|CI215490.1|CI215490
EST:     GCGTCTGGATTGGTGGTTCTATTTTGGCTTCTCTTAGCACTTTCCAGCAG                         ATGTGGATCTCCAAGGGCGAGTATGATGAATCTGGTCCTGGCATTGTCCAT
genomic: GCGTCTGGATTGGTGGTTCTATTTTGGCTTCTCTTAGCACTTTCCAGCAGgtagggtttt ... tgtttcacagATGTGGATCTCCAAGGGCGAGTATGATGAATCTGGTCCTGGCATTGTCCAT
EST: gi|88836457|gb|CI078354.1|CI078354
EST:     GCGTCTGGATTGGTGGTTCTATTTTGGCTTCTCTTAGCACTTTCCAGCAG                         ATGTGGATCTCCAAGGGCGAGTATGATGAATCTGGTCCTGGCATTGTCCAT
genomic: GCGTCTGGATTGGTGGTTCTATTTTGGCTTCTCTTAGCACTTTCCAGCAGgtagggtttt ... tgtttcacagATGTGGATCTCCAAGGGCGAGTATGATGAATCTGGTCCTGGCATTGTCCAT
EST: gi|33689586|gb|CF317825.1|CF317825
EST:     GCGTCTGGATTGGTGGTTCTATTTTGGCTTCTCTTAGCACTTTCCAGCAG                         ATGTGGATCTCCAAGGGCGAGTATGATGAATCTGGTCCTGGCATTGTCCAT
genomic: GCGTCTGGATTGGTGGTTCTATTTTGGCTTCTCTTAGCACTTTCCAGCAGgtagggtttt ... tgtttcacagATGTGGATCTCCAAGGGCGAGTATGATGAATCTGGTCCTGGCATTGTCCAT
EST: gi|89194383|gb|CI116820.1|CI116820
EST:     GCGTCTGGATTGGTGGTTCTATTTTGGCTTCTCTTAGCACTTTCCAGCAG                         ATGTGGATCTCCAAGGGCGAGTATGATGAATCTGGTCCTGGCATTGTCCAT
genomic: GCGTCTGGATTGGTGGTTCTATTTTGGCTTCTCTTAGCACTTTCCAGCAGgtagggtttt ... tgtttcacagATGTGGATCTCCAAGGGCGAGTATGATGAATCTGGTCCTGGCATTGTCCAT
EST: gi|86838869|gb|CI330302.1|CI330302
EST:     GATTGGTGGTTCTATTTTGGCTTCTCTTAGCACTTTCCAGCAG                         ATGTGGATCTCCAAGGGCGAGTATGATGAATCTGGTCCTGGCATTGTCCAT
genomic: GATTGGTGGTTCTATTTTGGCTTCTCTTAGCACTTTCCAGCAGgtagggtttt ... tgtttcacagATGTGGATCTCCAAGGGCGAGTATGATGAATCTGGTCCTGGCATTGTCCAT
EST: gi|87036133|gb|CI189580.1|CI189580
EST:     GCGTCTGGATTGGTGGTTCTATTTTGGCTTCTCTTAGCACTTTCCAGCAG                         ATGTGGATCTCCAAGGGCGAGTATGATGAATCTGGTCCTGGCATTGTCCAT
genomic: GCGTCTGGATTGGTGGTTCTATTTTGGCTTCTCTTAGCACTTTCCAGCAGgtagggtttt ... tgtttcacagATGTGGATCTCCAAGGGCGAGTATGATGAATCTGGTCCTGGCATTGTCCAT
EST: gi|33680683|gb|CF308922.1|CF308922
EST:     GCGTCTGGATTGGTGGTTCTATTTTGGCTTCTCTTAGCACTTTCCAGCAG                         ATGTGGATCTCCAAGGGCGAGTATGATGAATCTGGTCCTGGCATTGTCCAT
genomic: GCGTCTGGATTGGTGGTTCTATTTTGGCTTCTCTTAGCACTTTCCAGCAGgtagggtttt ... tgtttcacagATGTGGATCTCCAAGGGCGAGTATGATGAATCTGGTCCTGGCATTGTCCAT
EST: gi|89192101|gb|CI393458.1|CI393458
EST:     GCGTCTGGATTGGTGGTTCTATTTTGGCTTCTCTTAGCACTTTCCAGCAG                         ATGTGGATCTCCAAGGGCGAGTATGATGAATCTGGTCCTGGCATTGTCCAT
genomic: GCGTCTGGATTGGTGGTTCTATTTTGGCTTCTCTTAGCACTTTCCAGCAGgtagggtttt ... tgtttcacagATGTGGATCTCCAAGGGCGAGTATGATGAATCTGGTCCTGGCATTGTCCAT
EST: gi|86508918|gb|CI151551.1|CI151551
EST:     GCGTCTGGATTGGTGGTTCTATTTTGGCTTCTCTTAGCACTTTCCAGCAG                         ATGTGGATCTCCAAGGGCGAGTATGATGAATCTGGTCCTGGCATTGTCCAT
genomic: GCGTCTGGATTGGTGGTTCTATTTTGGCTTCTCTTAGCACTTTCCAGCAGgtagggtttt ... tgtttcacagATGTGGATCTCCAAGGGCGAGTATGATGAATCTGGTCCTGGCATTGTCCAT
EST: gi|86534767|gb|CI174973.1|CI174973
EST:     GCGTCTGGATTGGTGGTTCTATTTTGGCTTCTCTTAGCACTTTCCAGCAG                         ATGTGGATCTCCAAGGGCGAGTATGATGAATCTGGTCCTGGCATTGTCCAT
genomic: GCGTCTGGATTGGTGGTTCTATTTTGGCTTCTCTTAGCACTTTCCAGCAGgtagggtttt ... tgtttcacagATGTGGATCTCCAAGGGCGAGTATGATGAATCTGGTCCTGGCATTGTCCAT
EST: gi|86412844|gb|CI067249.1|CI067249
EST:     GCGTCTGGATTGGTGGTTCTATTTTGGCTTCTCTTAGCACTTTCCAGCAG                         ATGTGGATCTCCAAGGGCGAGTATGATGAATCTGGTCCTGGCATGGTCCAT
genomic: GCGTCTGGATTGGTGGTTCTATTTTGGCTTCTCTTAGCACTTTCCAGCAGgtagggtttt ... tgtttcacagATGTGGATCTCCAAGGGCGAGTATGATGAATCTGGTCCTGGCATTGTCCAT
EST: gi|18386205|gb|BM419404.1|BM419404
EST:     GCGTCTGGATTGGTGGTTCTATTTTGGCTTCTCTTAGCACTTTCCAGCAG                         ATGTGGATCTCCNAGGGCGAGTATGATGAATCTGGTCCTGGCATTGTCCAT
genomic: GCGTCTGGATTGGTGGTTCTATTTTGGCTTCTCTTAGCACTTTCCAGCAGgtagggtttt ... tgtttcacagATGTGGATCTCCAAGGGCGAGTATGATGAATCTGGTCCTGGCATTGTCCAT
EST: gi|86603289|gb|CI112049.1|CI112049
EST:     GCGTCTGGATTGGTGGTTCTATTTTGGCTTCTCTTAGCACTTTCCAGCAG                         ATGTGGATCTCCAAGGGCGAGTATGATGAATCTGGTCCTGGCATTGTCCAT
genomic: GCGTCTGGATTGGTGGTTCTATTTTGGCTTCTCTTAGCACTTTCCAGCAGgtagggtttt ... tgtttcacagATGTGGATCTCCAAGGGCGAGTATGATGAATCTGGTCCTGGCATTGTCCAT
EST: gi|88964680|gb|CI070026.1|CI070026
EST:     GCGTCTGGATTGGTGGTTCTATTTTGGCTTCTCTTAGCACTTTCCAGCAG                         ATGTGGATCTCCAAGGGCGAGTATGATGAATCTGGTCCTGGCATTGTCCAT
genomic: GCGTCTGGATTGGTGGTTCTATTTTGGCTTCTCTTAGCACTTTCCAGCAGgtagggtttt ... tgtttcacagATGTGGATCTCCAAGGGCGAGTATGATGAATCTGGTCCTGGCATTGTCCAT
EST: gi|33679585|gb|CF307824.1|CF307824
EST:     GCGTCTGGATTGGTGGTTCTATTTTGGCTTCTCTTAGCACTTTCCAGCAG                         ATGTGGATCTCCAAGGGCGAGTATGATGAATCTGGTCCTGGCATTGTCCAT
genomic: GCGTCTGGATTGGTGGTTCTATTTTGGCTTCTCTTAGCACTTTCCAGCAGgtagggtttt ... tgtttcacagATGTGGATCTCCAAGGGCGAGTATGATGAATCTGGTCCTGGCATTGTCCAT
EST: gi|88841200|gb|CI080654.1|CI080654
EST:     GCGTCTGGATTGGTGGTTCTATTTTGGCTTCTCTTAGCACTTTCCAGCAG                         ATGTGGATCTCCAAGGGCGAGTATGATGAATCTGGTCCTGGCATAGTCCAT
genomic: GCGTCTGGATTGGTGGTTCTATTTTGGCTTCTCTTAGCACTTTCCAGCAGgtagggtttt ... tgtttcacagATGTGGATCTCCAAGGGCGAGTATGATGAATCTGGTCCTGGCATTGTCCAT
EST: gi|86871125|gb|CI328327.1|CI328327
EST:     GCGTCTGGATTGGTGGTTCTATTTTGGCTTCTCTTAGCACTTTCCAGCAG                         ATTTGGATCTCCAAGGGCGAGTATGATGAATCTGGTCCTGGCATTGTCCAT
genomic: GCGTCTGGATTGGTGGTTCTATTTTGGCTTCTCTTAGCACTTTCCAGCAGgtagggtttt ... tgtttcacagATGTGGATCTCCAAGGGCGAGTATGATGAATCTGGTCCTGGCATTGTCCAT
EST: gi|5055984|gb|AU075363.1|AU075363
EST:     GCGTCTGGATTGGTGGTTCTATTTTGGCTTCTCTTAGCACTTTCCAGCAG                         ATGTGGATCTCCAAGGGCGAGTATGATGAATCTGGTCCTGGCATTGTCCAT
genomic: GCGTCTGGATTGGTGGTTCTATTTTGGCTTCTCTTAGCACTTTCCAGCAGgtagggtttt ... tgtttcacagATGTGGATCTCCAAGGGCGAGTATGATGAATCTGGTCCTGGCATTGTCCAT
EST: gi|88832901|gb|CI369791.1|CI369791
EST:     GTTCTATTTTGGCTTCTCTTAGCACTTTCCAGCAG                         ATATGGATCTCCAAGGGCGAGTATGATGAATCTGGTCCTGGCATTGTCCAT
genomic: GTTCTATTTTGGCTTCTCTTAGCACTTTCCAGCAGgtagggtttt ... tgtttcacagATGTGGATCTCCAAGGGCGAGTATGATGAATCTGGTCCTGGCATTGTCCAT
EST: gi|88845863|gb|CI084593.1|CI084593
EST:     GCGTCTGGATTGGTGGTTCTATTTTGGCTTCTCTTAGCACTTTCCAGCAG                         ATGTGGATCTCCAAGGGCGAGTATGATGAATCTGGTCCTGGCATTGTCCAT
genomic: GCGTCTGGATTGGTGGTTCTATTTTGGCTTCTCTTAGCACTTTCCAGCAGgtagggtttt ... tgtttcacagATGTGGATCTCCAAGGGCGAGTATGATGAATCTGGTCCTGGCATTGTCCAT
EST: gi|88205875|gb|CI205724.1|CI205724
EST:     GCGTCTGGATTGGTGGTTCTATTTTGGCTTCTCTTAGCACTTTCCAGCAG                         ATGTGGATCTCCAAGGGCGAGTATGATGAATCTGGTCCTGGCATTGTCCAT
genomic: GCGTCTGGATTGGTGGTTCTATTTTGGCTTCTCTTAGCACTTTCCAGCAGgtagggtttt ... tgtttcacagATGTGGATCTCCAAGGGCGAGTATGATGAATCTGGTCCTGGCATTGTCCAT
EST: gi|89187676|gb|CI115122.1|CI115122
EST:     GCGTCTGGATTGGTGGTTCTATTTTGGCTTCTCTTAGCACTTTCCAGCAG                         ATGTGGATCTCCAAGGGCGAGTATGATGAATCTGGTCCTGGCATTGTCCAT
genomic: GCGTCTGGATTGGTGGTTCTATTTTGGCTTCTCTTAGCACTTTCCAGCAGgtagggtttt ... tgtttcacagATGTGGATCTCCAAGGGCGAGTATGATGAATCTGGTCCTGGCATTGTCCAT
EST: gi|89174866|gb|CI111064.1|CI111064
EST:     GCGTCTGGATTGGTGGTTCTATTTTGGCTTCTCTTAGCACTTTCCAGCAG                         ATGTGGATCTCCAAGGGCGAGTATGATGAATCTGGTCCTGGCATTGTCCAT
genomic: GCGTCTGGATTGGTGGTTCTATTTTGGCTTCTCTTAGCACTTTCCAGCAGgtagggtttt ... tgtttcacagATGTGGATCTCCAAGGGCGAGTATGATGAATCTGGTCCTGGCATTGTCCAT
EST: gi|88840021|gb|CI079475.1|CI079475
EST:     GCGTCTGGATTGGTGGTTCTATTTTGGCTTCTCTTAGCACTTTCCAGCAG                         ATGTGGATCTCCAAGGGCGAGTATGATGAATCTGGTCCTGGCATTGTCCAT
genomic: GCGTCTGGATTGGTGGTTCTATTTTGGCTTCTCTTAGCACTTTCCAGCAGgtagggtttt ... tgtttcacagATGTGGATCTCCAAGGGCGAGTATGATGAATCTGGTCCTGGCATTGTCCAT
EST: gi|86837090|gb|CI347608.1|CI347608
EST:     CACTTTCCAGCAG                         ATGTGGATCTCCAAGGGCGAGTATGATGAATCTGGTCCTGGCATTGTCCAT
genomic: CACTTTCCAGCAGgtagggtttt ... tgtttcacagATGTGGATCTCCAAGGGCGAGTATGATGAATCTGGTCCTGGCATTGTCCAT
EST: gi|88841566|gb|CI080822.1|CI080822
EST:     GCGTCTGGATTGGTGGTTCTATTTTGGCTTCTCTTAGCACTTTCCAGCAG                         ATGTGGATCTCCAAGGGCGAGTATGATGAATCTGGTCCTGGCATTGTCCAT
genomic: GCGTCTGGATTGGTGGTTCTATTTTGGCTTCTCTTAGCACTTTCCAGCAGgtagggtttt ... tgtttcacagATGTGGATCTCCAAGGGCGAGTATGATGAATCTGGTCCTGGCATTGTCCAT
EST: gi|88907209|gb|CI090003.1|CI090003
EST:     GCGTCTGGATTGGTGGTTCTATTTTGGCTTCTCTTAGCACTTTCCAGCAG                         ATGTGGATCTCCAAGGGCGAGTATGATGAATCTGGTCCTGGCATTGTCCAT
genomic: GCGTCTGGATTGGTGGTTCTATTTTGGCTTCTCTTAGCACTTTCCAGCAGgtagggtttt ... tgtttcacagATGTGGATCTCCAAGGGCGAGTATGATGAATCTGGTCCTGGCATTGTCCAT
EST: gi|86430718|gb|CI083141.1|CI083141
EST:     GCGTCTGGATTGGTGGTTCTATTTTGGCTTCTCTTAGCACTTTCCAGCAG                         ATGTGGATCTCCAAGGGCGAGTATGATGAATCTGGTCCTGGCATTGTCCAT
genomic: GCGTCTGGATTGGTGGTTCTATTTTGGCTTCTCTTAGCACTTTCCAGCAGgtagggtttt ... tgtttcacagATGTGGATCTCCAAGGGCGAGTATGATGAATCTGGTCCTGGCATTGTCCAT
EST: gi|86895534|gb|CI331346.1|CI331346
EST:     GCGTCTGGATTGGTGGTTCTATTTTGGCTTCTCTTAGCACTTTCCAGCAG                         ATGTGGATCTCCAAGGGCGAGTATGATGAATCTGGTCCTGGCATTGTCCAT
genomic: GCGTCTGGATTGGTGGTTCTATTTTGGCTTCTCTTAGCACTTTCCAGCAGgtagggtttt ... tgtttcacagATGTGGATCTCCAAGGGCGAGTATGATGAATCTGGTCCTGGCATTGTCCAT
EST: gi|86491819|gb|CI134452.1|CI134452
EST:     GCGTCTGGATTGGTGGTTCTATTTTGGCTTCTCTTAGCACTTTCCAGCAG                         ATGTGGATCTCCAAGGGCGAGTATGATGAATCTGGTCCTGGCATTGTCCAT
genomic: GCGTCTGGATTGGTGGTTCTATTTTGGCTTCTCTTAGCACTTTCCAGCAGgtagggtttt ... tgtttcacagATGTGGATCTCCAAGGGCGAGTATGATGAATCTGGTCCTGGCATTGTCCAT
EST: gi|86853709|gb|CI330560.1|CI330560
EST:     GCCTCTGGATTGGTGGTTCTATTTTGGCTTCTCTTAGCACTTTCCAGCAG                         ATGTGGATCTCCAAGGGCGAGTATGATGAATCTGGTCCTGGCATTGTCCAT
genomic: GCGTCTGGATTGGTGGTTCTATTTTGGCTTCTCTTAGCACTTTCCAGCAGgtagggtttt ... tgtttcacagATGTGGATCTCCAAGGGCGAGTATGATGAATCTGGTCCTGGCATTGTCCAT
EST: gi|88262079|gb|CI365655.1|CI365655
EST:     GCGTCTGGATTGGTGGTTCTATTTTGGCTTCTCTTAGCACTTTCCAGCAA                         ATGTGGATCTCCAAGGGCGAGTATGATGAATCTGGTCCTGGCATTGTCCAT
genomic: GCGTCTGGATTGGTGGTTCTATTTTGGCTTCTCTTAGCACTTTCCAGCAGgtagggtttt ... tgtttcacagATGTGGATCTCCAAGGGCGAGTATGATGAATCTGGTCCTGGCATTGTCCAT
EST: gi|88993303|gb|CI257731.1|CI257731
EST:     GCGTCTGGATTGGTGGTTCTATTTTGGCTTCTCTTAGCACTTTCCAGCAG                         ATGTGGATCTCCAAGGGCGAGTATGATGAATCTGGTCCTGGCATTGTCCAT
genomic: GCGTCTGGATTGGTGGTTCTATTTTGGCTTCTCTTAGCACTTTCCAGCAGgtagggtttt ... tgtttcacagATGTGGATCTCCAAGGGCGAGTATGATGAATCTGGTCCTGGCATTGTCCAT
EST: gi|88834585|gb|CI077868.1|CI077868
EST:     GCGTCTGGATTGGTGGTTCTATTTTGGCTTCTCTTAGCACTTTCCAGCAG                         ATGTGGATCTCCAAGGGCGAGTATGATGAATCTGGTCCTGGCATTGTCCAT
genomic: GCGTCTGGATTGGTGGTTCTATTTTGGCTTCTCTTAGCACTTTCCAGCAGgtagggtttt ... tgtttcacagATGTGGATCTCCAAGGGCGAGTATGATGAATCTGGTCCTGGCATTGTCCAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttattgcacatatcctcagaatcacatctgacaacgataacatttgtttcacagATGTGGATCTCCAAGGGCGAGTATGATGAATCTGGTCCTGGCATTGTCCATATGAAGTGCTTCTGAGCTTCTTGCCAAGTTTGTAGAGCGGTATTTCAAG
                                   cgataac  putative branch site (score: 3)
                                           tttgtttc  CT-rich tract
                                     ataacattt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
aagagacatagaaccggaagtgtaatagctgctgtcataactgtatttattgcacatatcctcagaatcacatctgacaacgataacatttgtttcacagATGTGGATCTCCAAGGGCGAGTATGATGAATCTGGTCCTGGCATTGTCCATATGAAGTGCTTCTGAGCTTCTTGCCAAGTTTGTAGAGCGGTATTTCAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
aagagaca
- - - - - - - - - - - - - - -tgctgtc
- - - - - - - - - - - - - - - - - - - - - - - - -ttgcaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catctga