1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtaagttcaaatcctattattagaagagtttttccacacatgtaacttcttaatactgtttttgtgaaattaagaatgtttatgtttttctcttgcagTGCAACATTGCTGCCTTCCATAAAACGATTTCTTCCAAAAGAATGGAACGATAATGCCATTGTTTGGCGTGCTCCACTTTTCCACT
species | Oryza sativa |
transcript | LOC_Os05g36070.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AATACTGTTCTCACTGCCTACTTTTTCATTCTTGGCATCGCTGCTCTCTG TGCAACATTGCTGCCTTCCATAAAACGATTTCTTCCAAAAGAATGGAACGAEST: gi|87005300|gb|CI285522.1|CI285522
genomic: AATACTGTTCTCACTGCCTACTTTTTCATTCTTGGCATCGCTGCTCTCTGgtaagttcaa ... tctcttgcagTGCAACATTGCTGCCTTCCATAAAACGATTTCTTCCAAAAGAATGGAACGA
EST: AATACTGTTCTCACTGCCTACTTTTTCATTCTTGGCATCGCTGCTCTCTG TGCAACATTGCTGCCTTCCATAAAACGATTTCTTCCAAAAGAATGGAACGAEST: gi|29625862|gb|CB630873.1|CB630873
genomic: AATACTGTTCTCACTGCCTACTTTTTCATTCTTGGCATCGCTGCTCTCTGgtaagttcaa ... tctcttgcagTGCAACATTGCTGCCTTCCATAAAACGATTTCTTCCAAAAGAATGGAACGA
EST: AATACTGTTCTCACTGCCTACTTTTTCATTCTTGGCATCGCTGCTCTCTG TGCAACATTGCTGCCTTCCATAAAACGATTTCTTCCAAAAGAATGGAACGAEST: gi|29623040|gb|CB628051.1|CB628051
genomic: AATACTGTTCTCACTGCCTACTTTTTCATTCTTGGCATCGCTGCTCTCTGgtaagttcaa ... tctcttgcagTGCAACATTGCTGCCTTCCATAAAACGATTTCTTCCAAAAGAATGGAACGA
EST: AATACTGTTCTCACTGCCTACTTTTTCATTCTTGGCATCGCTGCTCTCTG TGCAACATTGCTGCCTTCCATAAAACGATTTCTTCCAAAAGAATGGAACGAEST: gi|58656513|gb|CK045193.1|CK045193
genomic: AATACTGTTCTCACTGCCTACTTTTTCATTCTTGGCATCGCTGCTCTCTGgtaagttcaa ... tctcttgcagTGCAACATTGCTGCCTTCCATAAAACGATTTCTTCCAAAAGAATGGAACGA
EST: AATACTGTTCTCACTGCCTACTTTTTCATTCTTGGCATCGCTGCTCTCTG TGCAACATTGCTGCCTTCCATAAAACGATTTCTTCCAAAAGAATGGAACGAEST: gi|29623038|gb|CB628049.1|CB628049
genomic: AATACTGTTCTCACTGCCTACTTTTTCATTCTTGGCATCGCTGCTCTCTGgtaagttcaa ... tctcttgcagTGCAACATTGCTGCCTTCCATAAAACGATTTCTTCCAAAAGAATGGAACGA
EST: AATACTGTTCTCACTGCCTACTTTTTCATTCTTGGCATCGCTGCTCTCTG TGCAACATTGCTGCCTTCCATAAAACGATTTCTTCCAAAAGAATGGAACGAEST: gi|319908628|gb|HS977756.1|HS977756
genomic: AATACTGTTCTCACTGCCTACTTTTTCATTCTTGGCATCGCTGCTCTCTGgtaagttcaa ... tctcttgcagTGCAACATTGCTGCCTTCCATAAAACGATTTCTTCCAAAAGAATGGAACGA
EST: AATACTGNTCTCACTGCCTACTTTTTCATTCTTGGCATCGCTGCTCTCTG TGCAACATTGCTGCCTTCCATAAAACGATTTCTTNCAAAAGAATGGAACGA
genomic: AATACTGTTCTCACTGCCTACTTTTTCATTCTTGGCATCGCTGCTCTCTGgtaagttcaa ... tctcttgcagTGCAACATTGCTGCCTTCCATAAAACGATTTCTTCCAAAAGAATGGAACGA
aacttcttaatactgtttttgtgaaattaagaatgtttatgtttttctcttgcagTGCAACATTGCTGCCTTCCATAAAACGATTTCTTCCAAAAGAATGGAACGATAATGCCATTGTTTGGCGTGCTCCACTTTTCCACT
tcttaat putative branch site (score: 29)
tttatgtttttctctt putative PPT
aaattaagaatgttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagttcaaatcctattattagaagagtttttccacacatgtaacttcttaatactgtttttgtgaaattaagaatgtttatgtttttctcttgcagTGCAACATTGCTGCCTTCCATAAAACGATTTCTTCCAAAAGAATGGAACGATAATGCCATTGTTTGGCGTGCTCCACTTTTCCACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA