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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtccctatgatttctctaccaaactttggtttaaacacaatctggaattttccataaaatcaattttaggtatttgggctaccttccctaattgttctaaacaagatgcagctgtctgttgcagTATGTGAAGCACTTGGTCTTTTCTATGGCAAGCAAAGGGTGGAATGTTGTTGTAGGCAATCATAGGGGTCTGGGTGGCATCTCCATAACT

Basic information

species Oryza sativa
transcript LOC_Os05g35730.2
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os05g35730.1 (Oryza sativa), 3'ss of exon 4
lower sequence: GRMZM2G011169_T01 (Zea mays), 3'ss of exon 4
gtaagtccctatgatttctctaccaaactttggtttaaacacaatctggaatttt-ccataaaatc---aattttaggt---atttgggctaccttccctaattgttctaaacaagatgcagctg--tctgttgcagTATGTGAAGCACTTGGTCTTTTCTATGGCAAGCAAAGGGTGGAATGTTGTTGTAGGCAATCATAGGGGTCTGGGTGGCATCTCCATAACT
                  |    | |   |  |||||||||  | |||||| ||     || ||||    | | |  ||   ||||  ||||||||    | ||  |||||||||||||  |  |  | ||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| |||| || |||||||| ||||||||||||||||| 
-----------------gtaagtcga---tcagtttaaacaagaactggaagttgattgtataatccctgactctctgtttcattttagctacctttataatttaatctaaacaagatgtggggggctttgttgcagTATGTGAAGCACTTGGTCTTTTCTATGGCAATCAAAGGATGGAATGTTGTTGTAAGCAACCACAGGGGTCTTGGTGGCATCTCCATAACA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtatttgggctaccttccctaattgttctaaacaagatgcagctgtctgttgcagTATGTGAAGCACTTGGTCTTTTCTATGGCAAGCAAAGGGTGGAATGTTGTTGTAGGCAATCATAGGGGTCTGGGTGGCATCTCCATAACT
                         ttctaaa  putative branch site (score: 2)
                   taattgtt  TA-rich tract