1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tacggcggctaaactcaactcctaacagcggaaacttcttggattggatttcgtggcgattacttgcttgctgattggttttcatggtgaatcgatgcagAGGCTGGTGATCAAGACGAAGAGCGTGGAGTACATGCCGTTCCTGATGTCGCTGGCCGTGTTCCTGTGCGGCACGTCGTGGTTCATCTACGGCTTGCTCG
species | Oryza sativa |
transcript | LOC_Os05g35140.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CCGCCACCGTCTGCTCCATCTGCATGTACGCCTCCCCCCTCTCCATCATG AGGCTGGTGATCAAGACGAAGAGCGTGGAGTACATGCCGTTCCTGATGTCGEST: gi|88218357|gb|CI218206.1|CI218206
genomic: CCGCCACCGTCTGCTCCATCTGCATGTACGCCTCCCCCCTCTCCATCATGgtacgtgcct ... atcgatgcagAGGCTGGTGATCAAGACGAAGAGCGTGGAGTACATGCCGTTCCTGATGTCG
EST: CCGCCACCGTCTGCTCCATCTGCATGTACGCCTCCCCCCTCTCCATCATG AGGCTGGTGATCAAGACGAAGAGCGTGGAGTACATGCCGTTCCTGATGTCGEST: gi|29662555|gb|CB658830.1|CB658830
genomic: CCGCCACCGTCTGCTCCATCTGCATGTACGCCTCCCCCCTCTCCATCATGgtacgtgcct ... atcgatgcagAGGCTGGTGATCAAGACGAAGAGCGTGGAGTACATGCCGTTCCTGATGTCG
EST: CCGCCACCGTCTGCTCCATCTGCATGTACGCCTCCCCCCTCTCCATCATG AGGCTGGTGATCAAGACGAAGAGCGTGGAGTACATGCCGTTCCTGATGTCGEST: gi|29614686|gb|CB619699.1|CB619699
genomic: CCGCCACCGTCTGCTCCATCTGCATGTACGCCTCCCCCCTCTCCATCATGgtacgtgcct ... atcgatgcagAGGCTGGTGATCAAGACGAAGAGCGTGGAGTACATGCCGTTCCTGATGTCG
EST: CCGCCACCGTTTGCTCCATCTGCATGTACGCCTCCCCCCTCTCCATCATG AGGCTGGTGATCAAGACGAAGAGCGTGGAGTACATGCCGTTCCTGCTGTCGEST: gi|7134938|gb|AU082748.1|AU082748
genomic: CCGCCACCGTCTGCTCCATCTGCATGTACGCCTCCCCCCTCTCCATCATGgtacgtgcct ... atcgatgcagAGGCTGGTGATCAAGACGAAGAGCGTGGAGTACATGCCGTTCCTGATGTCG
EST: GCCACCGTNTGNTCCCATCTGCATGTACGCCTCCCCCTTCTCCCATCATG AGGCTGGTGATCAAGACGAAGAGCGTGGAGTACATGCCGTTCCTGATGTCEST: gi|29662554|gb|CB658829.1|CB658829
genomic: GCCACCGTCTGCT-CCATCTGCATGTACGCCTCCCCCCTCT-CCATCATGgtacgtgcct ... atcgatgcagAGGCTGGTGATCAAGACGAAGAGCGTGGAGTACATGCCGTTCCTGATGTC
EST: CCGCCACCGTCTGCTCCATCTGCATGTACGCCTCCCCCCTCTCCATCATG AGGCTGGTGATCAAGACGAAGAGCGTGGAGTACATGCCGTTCCTGATGTCGEST: gi|87027475|gb|CI272240.1|CI272240
genomic: CCGCCACCGTCTGCTCCATCTGCATGTACGCCTCCCCCCTCTCCATCATGgtacgtgcct ... atcgatgcagAGGCTGGTGATCAAGACGAAGAGCGTGGAGTACATGCCGTTCCTGATGTCG
EST: CCGCCACCGTCTGCTCCATCTGCATGTACGCCTCCCCCCTCTCCATCATG AGGCTGGTGATCAAGACGAAGAGCGTGGAGTACATGCCGTTCCTGATGTCGEST: gi|88215199|gb|CI215048.1|CI215048
genomic: CCGCCACCGTCTGCTCCATCTGCATGTACGCCTCCCCCCTCTCCATCATGgtacgtgcct ... atcgatgcagAGGCTGGTGATCAAGACGAAGAGCGTGGAGTACATGCCGTTCCTGATGTCG
EST: CCCCCCTCTCCATCATG AGTCTGGTGATCGAGACGAAGAGCGTGGAGTACATGCCGTTCCTGATGTCGEST: gi|29629891|gb|CB634900.1|CB634900
genomic: CCCCCCTCTCCATCATGgtacgtgcct ... atcgatgcagAGGCTGGTGATCAAGACGAAGAGCGTGGAGTACATGCCGTTCCTGATGTCG
EST: CCGCCACCGTCTGCTCCATCTGCATGTACGCCTCCCCCCTCTCCATCATG AGGCTGGTGATCAAGACGAAGAGCGTGGAGTACATGCCGTTCCTGCTGTCG
genomic: CCGCCACCGTCTGCTCCATCTGCATGTACGCCTCCCCCCTCTCCATCATGgtacgtgcct ... atcgatgcagAGGCTGGTGATCAAGACGAAGAGCGTGGAGTACATGCCGTTCCTGATGTCG
ggatttcgtggcgattacttgcttgctgattggttttcatggtgaatcgatgcagAGGCTGGTGATCAAGACGAAGAGCGTGGAGTACATGCCGTTCCTGATGTCGCTGGCCGTGTTCCTGTGCGGCACGTCGTGGTTCATCTACGGCTTGCTCG
tgctgat putative branch site (score: 50)
attactt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tacggcggctaaactcaactcctaacagcggaaacttcttggattggatttcgtggcgattacttgcttgctgattggttttcatggtgaatcgatgcagAGGCTGGTGATCAAGACGAAGAGCGTGGAGTACATGCCGTTCCTGATGTCGCTGGCCGTGTTCCTGTGCGGCACGTCGTGGTTCATCTACGGCTTGCTCG
- cggcggc
- - - - - - - - - - - - - - - - - cttcttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gctgatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tttcatg