1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...atatattttcttgcagttgcagatttaaataagctttactttcgataaatattcagataacacaattttggatatctgataccattgatcttatttgcagGCCCGTCCCCTGTTTAAAGACCGCAGGAAATTTCCTAAAATGGCTGATCCATTACTTGCGGGCCGATTTCCTATGCGGGGCCTGTATCAGGCTTTAGCAG
species | Oryza sativa |
transcript | LOC_Os05g30870.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AAGCAATCGACAACACCAAACCACTTGGAGAGCAGAACCTAGTGGCATGG GCCCGTCCCCTGTTTAAAGACCGCAGGAAATTTCCTAAAATGGCTGATCCAEST: gi|58694033|gb|CK082720.1|CK082720
genomic: AAGCAATCGACAACACCAAACCACTTGGAGAGCAGAACCTAGTGGCATGGgtatgttcat ... ttatttgcagGCCCGTCCCCTGTTTAAAGACCGCAGGAAATTTCCTAAAATGGCTGATCCA
EST: AAGCAATCGACAACACCAAACCACTTGGAGAGCAGAACCTAGTGGCATGG GCCCGTCCCCTGTTTAAAGACCGCAGGAAATTTCCTAAAATGGCTGATCCAEST: gi|29625489|gb|CB630500.1|CB630500
genomic: AAGCAATCGACAACACCAAACCACTTGGAGAGCAGAACCTAGTGGCATGGgtatgttcat ... ttatttgcagGCCCGTCCCCTGTTTAAAGACCGCAGGAAATTTCCTAAAATGGCTGATCCA
EST: AAGCAATCGACAACACCAAACCACTTGGAGAGCAGAACCTAGTGGCATGG GCCCGTCCCCTGTTTAAAGACCGCAGGAAATTTCCTAAAATGGCTGATCCAEST: gi|58688006|gb|CK076693.1|CK076693
genomic: AAGCAATCGACAACACCAAACCACTTGGAGAGCAGAACCTAGTGGCATGGgtatgttcat ... ttatttgcagGCCCGTCCCCTGTTTAAAGACCGCAGGAAATTTCCTAAAATGGCTGATCCA
EST: AAGCAATCGACAACACCAAACCACTTGGAGAGCAGAACCTAGTGGCATGG GCCCGTCCCCTGTTTAAAGACCGCAGGAAATTTCCTAAAATGGCTGATCCAEST: gi|58686448|gb|CK075135.1|CK075135
genomic: AAGCAATCGACAACACCAAACCACTTGGAGAGCAGAACCTAGTGGCATGGgtatgttcat ... ttatttgcagGCCCGTCCCCTGTTTAAAGACCGCAGGAAATTTCCTAAAATGGCTGATCCA
EST: AAGCAATCGACAACACCAAACCACTTGGAGAGCAGAACCTAGTGGCATGG GCCCGTCCCCTGTTTAAAGACCGCAGGAAATTTCCTAAAATGGCTGATCCAEST: gi|58599582|gb|CK010110.1|CK010110
genomic: AAGCAATCGACAACACCAAACCACTTGGAGAGCAGAACCTAGTGGCATGGgtatgttcat ... ttatttgcagGCCCGTCCCCTGTTTAAAGACCGCAGGAAATTTCCTAAAATGGCTGATCCA
EST: AAGCAATCGACAACACCAAACCACTTGGAGAGCAGAACCTAGTGGCATGG GCCCGTCCCCTGTTTAAAGACCGCAGGAAATTTCCTAAAATGGCTGATCCAEST: gi|29613632|gb|CB618645.1|CB618645
genomic: AAGCAATCGACAACACCAAACCACTTGGAGAGCAGAACCTAGTGGCATGGgtatgttcat ... ttatttgcagGCCCGTCCCCTGTTTAAAGACCGCAGGAAATTTCCTAAAATGGCTGATCCA
EST: AAGCAATCGACAACACCAAACCACTTGGAGAGCAGAACCTAGTGGCATGG GCCCGTCCCCTGTTTAAAGACCGCAGGAAATTTCCTAAAATGGCTGATCCA
genomic: AAGCAATCGACAACACCAAACCACTTGGAGAGCAGAACCTAGTGGCATGGgtatgttcat ... ttatttgcagGCCCGTCCCCTGTTTAAAGACCGCAGGAAATTTCCTAAAATGGCTGATCCA
taaatattcagataacacaattttggatatctgataccattgatcttatttgcagGCCCGTCCCCTGTTTAAAGACCGCAGGAAATTTCCTAAAATGGCTGATCCATTACTTGCGGGCCGATTTCCTATGCGGGGCCTGTATCAGGCTTTAGCAG
tcttattt CT-rich tract
atcttattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atatattttcttgcagttgcagatttaaataagctttactttcgataaatattcagataacacaattttggatatctgataccattgatcttatttgcagGCCCGTCCCCTGTTTAAAGACCGCAGGAAATTTCCTAAAATGGCTGATCCATTACTTGCGGGCCGATTTCCTATGCGGGGCCTGTATCAGGCTTTAGCAG
- - - - tcttgca
- - - - - - - -gttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acacaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgatac