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...cttctacttgatactgttaaaccggtgtgcttttacctttgaccggtataaaaacttccaaattagatgtcaattagattatcaaatatacttttttcagAGCTGGAGGAGTACAGAGACAAGAGCCGGTTCCTGTACGGGGAGTCGATGGGCGGCGCGGTTGCGCTGCTGCTGCACCGCAAGGACCCAACCTTCTGGGA
species | Oryza sativa |
transcript | LOC_Os05g29974.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GACTGCGACAGATTCTTCAAATCAATATGTG AGCTGGAGGAGTACAGAGACAAGAGCCGGTTCCTGTACGGGGAGTCGATGGEST: gi|88356078|gb|CI627526.1|CI627526
genomic: GACTGCGACAGATTCTTCAAATCAATATGTGgtaaagaaaa ... cttttttcagAGCTGGAGGAGTACAGAGACAAGAGCCGGTTCCTGTACGGGGAGTCGATGG
EST: GTTCGAGCATCTTGTCGATGACTGCGACAGATTCTTCAAATCAATATGTG AGCTGGAGGAGTACAGAGACAAGAGCCGGTTCCTGTACGGGGAGTCGATGGEST: gi|88416988|gb|CI573703.1|CI573703
genomic: GTTCGAGCATCTTGTCGATGACTGCGACAGATTCTTCAAATCAATATGTGgtaaagaaaa ... cttttttcagAGCTGGAGGAGTACAGAGACAAGAGCCGGTTCCTGTACGGGGAGTCGATGG
EST: GTTCGAGCATCTTGTCGATGACTGCGACAGATTCTTCAAATCAATATGTG AGCTGGAGGAGTA--GAGACAAGAGCCGGTTCCTGTACGGGGAGTCGATGGEST: gi|88760430|gb|CI769986.1|CI769986
genomic: GTTCGAGCATCTTGTCGATGACTGCGACAGATTCTTCAAATCAATATGTGgtaaagaaaa ... cttttttcagAGCTGGAGGAGTACAGAGACAAGAGCCGGTTCCTGTACGGGGAGTCGATGG
EST: GTTCGAGCATCTTGTCGATAACTGCGACAGATTCTTCAAATCAATATGTG AGCTGGAGGAGTACAGAGACAAGAGCCGGTTCCTGTACGEST: gi|29656345|gb|CB652620.1|CB652620
genomic: GTTCGAGCATCTTGTCGATGACTGCGACAGATTCTTCAAATCAATATGTGgtaaagaaaa ... cttttttcagAGCTGGAGGAGTACAGAGACAAGAGCCGGTTCCTGTACG
EST: GTTCGAGCATCTTGTCGATGACTGCGACAGATTCTTCAAATCAATATGTG AGCTGGAGGAGTACAGAGACAAGAGCCGGTTCCTGTACGGGGAGTCGATGGEST: gi|88743266|gb|CI766774.1|CI766774
genomic: GTTCGAGCATCTTGTCGATGACTGCGACAGATTCTTCAAATCAATATGTGgtaaagaaaa ... cttttttcagAGCTGGAGGAGTACAGAGACAAGAGCCGGTTCCTGTACGGGGAGTCGATGG
EST: GTTCGAGCATCTTGTCGATGACTGCGACAGATTCTTCAAATCAATATGTG AGCTGGAGGAGTACAGAGACAAGAGCCGGTTCCTGTACGGGGAGTCGATGG
genomic: GTTCGAGCATCTTGTCGATGACTGCGACAGATTCTTCAAATCAATATGTGgtaaagaaaa ... cttttttcagAGCTGGAGGAGTACAGAGACAAGAGCCGGTTCCTGTACGGGGAGTCGATGG
gtataaaaacttccaaattagatgtcaattagattatcaaatatacttttttcagAGCTGGAGGAGTACAGAGACAAGAGCCGGTTCCTGTACGGGGAGTCGATGGGCGGCGCGGTTGCGCTGCTGCTGCACCGCAAGGACCCAACCTTCTGGGA
tacttttttc CT-rich tract
tcaattagattatcaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttctacttgatactgttaaaccggtgtgcttttacctttgaccggtataaaaacttccaaattagatgtcaattagattatcaaatatacttttttcagAGCTGGAGGAGTACAGAGACAAGAGCCGGTTCCTGTACGGGGAGTCGATGGGCGGCGCGGTTGCGCTGCTGCTGCACCGCAAGGACCCAACCTTCTGGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - -gatactg
- - - - - - - - - - - - - -tgctttt
- - - - - - - - - - - - - - - - - - - - - - - -ataaaaa