1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...tctcaggtaataatccttagcttcactttttcaggctccataacatgggaatcattgcattctctttccatcatattgtttcttctctatttgcttgtagGGCTTCTGCTGTATTTGTGGGAATATACGAACCGACAAAAAGAAAACTACTGGAGACTTTTCCTGAAAATTTGAGTGCTGTTGCCCATTTT
species | Oryza sativa |
transcript | LOC_Os05g29860.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TGGAAAGGATTGTATTCTGGATTAGCTGGAAATATTGCTGGTGTTCTCCC GGCTTCTGCTGTATTTGTGGGAATATACGAACCGACAAAAAGAAAACTACTEST: gi|88667078|gb|CI719214.1|CI719214
genomic: TGGAAAGGATTGTATTCTGGATTAGCTGGAAATATTGCTGGTGTTCTCCCgtaagtacaa ... ttgcttgtagGGCTTCTGCTGTATTTGTGGGAATATACGAACCGACAAAAAGAAAACTACT
EST: TGGAAAGGATTGTATTCTGGATTACCTGGAAATATTGCTGGTGTTCTCCC GGCTTCTGCTGTATTTGTGGGAATATACGAACCGACAAAAAGAAAACTACTEST: gi|87017421|gb|CI287961.1|CI287961
genomic: TGGAAAGGATTGTATTCTGGATTAGCTGGAAATATTGCTGGTGTTCTCCCgtaagtacaa ... ttgcttgtagGGCTTCTGCTGTATTTGTGGGAATATACGAACCGACAAAAAGAAAACTACT
EST: TGGAAAGGATTGTATTCTGGATTAGCTGGAAATATTGCTGGTGTTCTCCC GGCTTCTGCTGTATTTGTGGGAATATACGAACCGACAAAAAGAAAACTACTEST: gi|88905625|gb|CI712924.1|CI712924
genomic: TGGAAAGGATTGTATTCTGGATTAGCTGGAAATATTGCTGGTGTTCTCCCgtaagtacaa ... ttgcttgtagGGCTTCTGCTGTATTTGTGGGAATATACGAACCGACAAAAAGAAAACTACT
EST: TGGAAAGGATTGTATTCTGGATTAGCTGGAAATATTGCTGGTGTTCTCCC GGCTTCTGCTGTATTTGTGGGAATATACGAACCGACAAAAAGAAAACTACEST: gi|87011172|gb|CI287849.1|CI287849
genomic: TGGAAAGGATTGTATTCTGGATTAGCTGGAAATATTGCTGGTGTTCTCCCgtaagtacaa ... ttgcttgtagGGCTTCTGCTGTATTTGTGGGAATATACGAACCGACAAAAAGAAAACTAC
EST: TGGAAAGGATTGTATTCTGGATTAGCTGGAAATATTGCTGGTGTTCTCCC GGCTTCTGCTGTAEST: gi|88594406|gb|CI714364.1|CI714364
genomic: TGGAAAGGATTGTATTCTGGATTAGCTGGAAATATTGCTGGTGTTCTCCCgtaagtacaa ... ttgcttgtagGGCTTCTGCTGTA
EST: TGGAAAGGATTGTATTCTGGATTAGCTGGAAATATTGCTGGTGTTCTCCC GGCTTCTGCTGTATTTGTGGGAATATACGAEST: gi|33682562|gb|CF310801.1|CF310801
genomic: TGGAAAGGATTGTATTCTGGATTAGCTGGAAATATTGCTGGTGTTCTCCCgtaagtacaa ... ttgcttgtagGGCTTCTGCTGTATTTGTGGGAATATACGA
EST: TGGAAAGGATTGTATTCTGGATTAGCTGGAAATATTGCTGGTGTTCTCCC GGCTTCTGCTGTATTTGTGGGAATATACGAACCGACAAAAAGAAAACTACTEST: gi|88594629|gb|CI714587.1|CI714587
genomic: TGGAAAGGATTGTATTCTGGATTAGCTGGAAATATTGCTGGTGTTCTCCCgtaagtacaa ... ttgcttgtagGGCTTCTGCTGTATTTGTGGGAATATACGAACCGACAAAAAGAAAACTACT
EST: TGGAAAGGATTGTATTCTGGATTACCTGGAAATATTGCTGGTGTTCTCCC GGCTTCTGCTGTATTTGTGGGAATATACGAAEST: gi|88905107|gb|CI712406.1|CI712406
genomic: TGGAAAGGATTGTATTCTGGATTAGCTGGAAATATTGCTGGTGTTCTCCCgtaagtacaa ... ttgcttgtagGGCTTCTGCTGTATTTGTGGGAATATACGAA
EST: TGGAAAGGATTGTATTCTGGATTAGCTGGAAATATTGCTGGTGTTCTCCC GGCTTCTGCTGTATTTGTGGGAATATACGAACCGACAAAAAGAAAEST: gi|88973494|gb|CI717922.1|CI717922
genomic: TGGAAAGGATTGTATTCTGGATTAGCTGGAAATATTGCTGGTGTTCTCCCgtaagtacaa ... ttgcttgtagGGCTTCTGCTGTATTTGTGGGAATATACGAACCGACAAAAAGAAA
EST: TGGAAAGGATTGTATTCTGGATTAGCTGGAAATATTGCTGGTGTTCTCCC GGCTTCTGCTGTATTTEST: gi|33686568|gb|CF314807.1|CF314807
genomic: TGGAAAGGATTGTATTCTGGATTAGCTGGAAATATTGCTGGTGTTCTCCCgtaagtacaa ... ttgcttgtagGGCTTCTGCTGTATTT
EST: TGGAAAGGATTGTATTCTGGATTAGCTGGAAATATTGCTGGTGTTCTCCC GGCTTCTGCTGTATTTGTGGGAATATACGAACCGACAAAAAGAAAACTACTEST: gi|88675096|gb|CI729209.1|CI729209
genomic: TGGAAAGGATTGTATTCTGGATTAGCTGGAAATATTGCTGGTGTTCTCCCgtaagtacaa ... ttgcttgtagGGCTTCTGCTGTATTTGTGGGAATATACGAACCGACAAAAAGAAAACTACT
EST: TGGAAAGGATTGTATTCTGGATTAGCTGGAAATATTGCTGGTGTTCTCCC GGCTTCTGCTGTATTTGTGGGAATATACGAACCGACAAEST: gi|88904956|gb|CI712255.1|CI712255
genomic: TGGAAAGGATTGTATTCTGGATTAGCTGGAAATATTGCTGGTGTTCTCCCgtaagtacaa ... ttgcttgtagGGCTTCTGCTGTATTTGTGGGAATATACGAACCGACAA
EST: TGGAAAGGATTGTATTCTGGATTAGCTGGAAATATTGCTGGTGTTCTCCC GGCTTCTGCTGTATTTGTGGGAATATACGAACCGACAAAAAGAAAACTAEST: gi|88738022|gb|CI761530.1|CI761530
genomic: TGGAAAGGATTGTATTCTGGATTAGCTGGAAATATTGCTGGTGTTCTCCCgtaagtacaa ... ttgcttgtagGGCTTCTGCTGTATTTGTGGGAATATACGAACCGACAAAAAGAAAACTA
EST: TGGAAAGGATTGTATTCTGGATTAGCTGGAAATATTGCTGGTGTTCTCCC GGCTTCTGCTGTATTTGTGGGAATATACGAACCGACAAAAAGAAAACTACTEST: gi|88676991|gb|CI731104.1|CI731104
genomic: TGGAAAGGATTGTATTCTGGATTAGCTGGAAATATTGCTGGTGTTCTCCCgtaagtacaa ... ttgcttgtagGGCTTCTGCTGTATTTGTGGGAATATACGAACCGACAAAAAGAAAACTACT
EST: TGGAAAGGATTGTATTCTGGATTAGCTGGAAATATTGCTGGTGTTCTCCC GGCTTCTGCTGTATTTGTGGGAATATACGAACCGACAAAAAGAAAACTACTEST: gi|88908777|gb|CI714919.1|CI714919
genomic: TGGAAAGGATTGTATTCTGGATTAGCTGGAAATATTGCTGGTGTTCTCCCgtaagtacaa ... ttgcttgtagGGCTTCTGCTGTATTTGTGGGAATATACGAACCGACAAAAAGAAAACTACT
EST: TGGAAAGGATTGTATTCTGGATTAGCTGGAAATATTGCTGGTGTTCTCCC GGCTTCTGCTGTATTTGTGGGAATATACGAACCGEST: gi|88667588|gb|CI722327.1|CI722327
genomic: TGGAAAGGATTGTATTCTGGATTAGCTGGAAATATTGCTGGTGTTCTCCCgtaagtacaa ... ttgcttgtagGGCTTCTGCTGTATTTGTGGGAATATACGAACCG
EST: TGGAAAGGATTGTATTCTGGATTAGCTGGAAATATTGCTGGTGTTCTCCC GGCTTCTGCTGTATTTGTGGGAATATACGAACCGACAAAAAGAAAACTACTEST: gi|88431710|gb|CI576901.1|CI576901
genomic: TGGAAAGGATTGTATTCTGGATTAGCTGGAAATATTGCTGGTGTTCTCCCgtaagtacaa ... ttgcttgtagGGCTTCTGCTGTATTTGTGGGAATATACGAACCGACAAAAAGAAAACTACT
EST: TGGAAAGGATTGTATTCTGGATTAGCTGGAAATATTGCTGGTGTTCTCCC GGCTTCTGCTGTATTTGTGGGAATATACGAACCGACAAAAAGAAAACTACTEST: gi|11565230|gb|AU165866.1|AU165866
genomic: TGGAAAGGATTGTATTCTGGATTAGCTGGAAATATTGCTGGTGTTCTCCCgtaagtacaa ... ttgcttgtagGGCTTCTGCTGTATTTGTGGGAATATACGAACCGACAAAAAGAAAACTACT
EST: TGGAAAGGATTGTATTCTGGATTAGCTGGAAATATTGCTGGTGTTCTCCC GGCTTCTGCTGTATTTGTGGGAATATACGAACCGACAAAAAGAAAACTACTEST: gi|88669978|gb|CI724094.1|CI724094
genomic: TGGAAAGGATTGTATTCTGGATTAGCTGGAAATATTGCTGGTGTTCTCCCgtaagtacaa ... ttgcttgtagGGCTTCTGCTGTATTTGTGGGAATATACGAACCGACAAAAAGAAAACTACT
EST: TGGAAAGGATTGTATTCTGGATTAGCTGGAAATATTGCTGGTGTTCTCCC GGCTTCTGCTGTATTTGTGGGAATATACGAACCGACAAAAAGAAAACTACTEST: gi|88954949|gb|CI720300.1|CI720300
genomic: TGGAAAGGATTGTATTCTGGATTAGCTGGAAATATTGCTGGTGTTCTCCCgtaagtacaa ... ttgcttgtagGGCTTCTGCTGTATTTGTGGGAATATACGAACCGACAAAAAGAAAACTACT
EST: TGGAAAGGATTGTATTCTGGATTAGCTGGAAATATTGCTGGTGTTCTCCC GGCTTCTGCTGTATTTGTGGGAATATACEST: gi|88904545|gb|CI711844.1|CI711844
genomic: TGGAAAGGATTGTATTCTGGATTAGCTGGAAATATTGCTGGTGTTCTCCCgtaagtacaa ... ttgcttgtagGGCTTCTGCTGTATTTGTGGGAATATAC
EST: TGGAAAGGATTGTATTCTGGATTAGCTGGAAATATTGCTGGTGTTCTCCC GGCTTCTGCTGTATTTGTGGGAATATACGAACCGACAAAAAGAAAACTACTEST: gi|2427972|gb|C72435.1|C72435
genomic: TGGAAAGGATTGTATTCTGGATTAGCTGGAAATATTGCTGGTGTTCTCCCgtaagtacaa ... ttgcttgtagGGCTTCTGCTGTATTTGTGGGAATATACGAACCGACAAAAAGAAAACTACT
EST: TGGAAAGGATTGTATTCTGGATTAGCTGGAAATATTGCTGGTGTTCTCCC GGCTTCTGCTGTATTTGTGGGAATATACGAACCGACAAAAAGAAAACTACTEST: gi|88594346|gb|CI714304.1|CI714304
genomic: TGGAAAGGATTGTATTCTGGATTAGCTGGAAATATTGCTGGTGTTCTCCCgtaagtacaa ... ttgcttgtagGGCTTCTGCTGTATTTGTGGGAATATACGAACCGACAAAAAGAAAACTACT
EST: TGGAAAGGATTGTATTCTGGATTAGCTGGAAATATTGCTGGTGTTCTCCC GGCTTCTGCTGTATTTGTGGGAATATACGEST: gi|88667495|gb|CI722234.1|CI722234
genomic: TGGAAAGGATTGTATTCTGGATTAGCTGGAAATATTGCTGGTGTTCTCCCgtaagtacaa ... ttgcttgtagGGCTTCTGCTGTATTTGTGGGAATATACG
EST: TGGAAAGGATTGTATTCTGGATTAGCTGGAAATATTGCTGGTGTTCTCCC GGCTTCTGCTGTATTTGTGGGAATATACGAACCGACAAAAAGAAAAEST: gi|88959424|gb|CI716793.1|CI716793
genomic: TGGAAAGGATTGTATTCTGGATTAGCTGGAAATATTGCTGGTGTTCTCCCgtaagtacaa ... ttgcttgtagGGCTTCTGCTGTATTTGTGGGAATATACGAACCGACAAAAAGAAAA
EST: TGGAAAGGATTGTATTCTGGATTAGCTGGAAATATTGCTGGTGTTCTCCC GGCTTCTGCTGTATEST: gi|88674644|gb|CI728757.1|CI728757
genomic: TGGAAAGGATTGTATTCTGGATTAGCTGGAAATATTGCTGGTGTTCTCCCgtaagtacaa ... ttgcttgtagGGCTTCTGCTGTAT
EST: TGGAAAGGATTGTATTCTGGATTAGCTGGAAATATTGCTGGTGTTCTCCC GGCTTCTGCTGTATTTGTGGGAAEST: gi|88673162|gb|CI727276.1|CI727276
genomic: TGGAAAGGATTGTATTCTGGATTAGCTGGAAATATTGCTGGTGTTCTCCCgtaagtacaa ... ttgcttgtagGGCTTCTGCTGTATTTGTGGGAA
EST: TGGAAAGGATTGTATTCTGGATTAGCTGGAAATATTGCTGGTGTTCTCCC GGCTTCTGCTGTATTTGTGGGAATATACGAACCGACAAAAAGAAAACTACTEST: gi|88417331|gb|CI578992.1|CI578992
genomic: TGGAAAGGATTGTATTCTGGATTAGCTGGAAATATTGCTGGTGTTCTCCCgtaagtacaa ... ttgcttgtagGGCTTCTGCTGTATTTGTGGGAATATACGAACCGACAAAAAGAAAACTACT
EST: TGGAAAGGATTGTATTCTGGATTAGCTGGAAATATTGCTGGTGTTCTCCC GGCTTCTGCTGTATTTGTGGGAATATACGAACCGACAAAAAGAAAAGTACTEST: gi|33681239|gb|CF309478.1|CF309478
genomic: TGGAAAGGATTGTATTCTGGATTAGCTGGAAATATTGCTGGTGTTCTCCCgtaagtacaa ... ttgcttgtagGGCTTCTGCTGTATTTGTGGGAATATACGAACCGACAAAAAGAAAACTACT
EST: TGGAAAGGATTGTATTCTGGATTAGCTGGAAATATTGCTGGTGTTCTCCC GGCTTCTGCTGTATTTGTGGGAATATACGAACCGACAAAAAGAAAACTACTEST: gi|88693111|gb|CI736686.1|CI736686
genomic: TGGAAAGGATTGTATTCTGGATTAGCTGGAAATATTGCTGGTGTTCTCCCgtaagtacaa ... ttgcttgtagGGCTTCTGCTGTATTTGTGGGAATATACGAACCGACAAAAAGAAAACTACT
EST: TGGAAAGGATTGTATTCTGGATTAGCTGGAAATATNGCTGGTGTCCTCCC GGCTTCTGCTGTATTTGTGGGAATATAAGAACCGACAAEST: gi|88595180|gb|CI715336.1|CI715336
genomic: TGGAAAGGATTGTATTCTGGATTAGCTGGAAATATTGCTGGTGTTCTCCCgtaagtacaa ... ttgcttgtagGGCTTCTGCTGTATTTGTGGGAATATACGAACCGACAA
EST: TGGAAAGGATTGTATTCTGGATTAGCTGGAAATATTGCTGGTGTTCTCCC GGCTTCTGCTGTATTTGTGGGEST: gi|88410825|gb|CI578631.1|CI578631
genomic: TGGAAAGGATTGTATTCTGGATTAGCTGGAAATATTGCTGGTGTTCTCCCgtaagtacaa ... ttgcttgtagGGCTTCTGCTGTATTTGTGGG
EST: TGGAAAGGATTGTATTCTGGATTAGCTGGAAATATTGCTGGTGTTCTCCC GGCTTCTGCTGTATTTGTGGGAATATACGAACCGACAAAAAGAAAACTAAT
genomic: TGGAAAGGATTGTATTCTGGATTAGCTGGAAATATTGCTGGTGTTCTCCCgtaagtacaa ... ttgcttgtagGGCTTCTGCTGTATTTGTGGGAATATACGAACCGACAAAAAGAAAACTACT
tgggaatcattgcattctctttccatcatattgtttcttctctatttgcttgtagGGCTTCTGCTGTATTTGTGGGAATATACGAACCGACAAAAAGAAAACTACTGGAGACTTTTCCTGAAAATTTGAGTGCTGTTGCCCATTTT
ttgtttcttctctatt CT-rich tract
atattgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctcaggtaataatccttagcttcactttttcaggctccataacatgggaatcattgcattctctttccatcatattgtttcttctctatttgcttgtagGGCTTCTGCTGTATTTGTGGGAATATACGAACCGACAAAAAGAAAACTACTGGAGACTTTTCCTGAAAATTTGAGTGCTGTTGCCCATTTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - -gcttcac
- - - - - - - - - - - - - - - - - gctccat
- - - - - - - - - - - - - - - - - - - - - - - - - - cattgca