Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattatattttttgtagttcagttttgtatttagctatcttataatcattgtatttaagatattgaattgaacaatttttcaatagGTTTGGGTTGTCCTGAAGCCAGGATTCTTAGCTTTACTCAAAGATCCTTTTGATCCAAAGCTTTTAGATGTCCTTATCTTTGATGCACTGCCACATATGG

Basic information

species Oryza sativa
transcript LOC_Os05g29050.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os05g29050.1 (Oryza sativa), 3'ss of exon 4
lower sequence: GRMZM2G066485_T01 (Zea mays), 3'ss of exon 4
gtattatattttttgtagttcagttttgtatttagctatcttataatcattgtatttaagatattgaattgaacaatttttcaatagGTTTGGGTTGTCCTGAAGCCAGGATTCTTAGCTTTACTCAAAGATCCTTTTGATCCAAAGCTTTTAGATGTCCTTATCTTTGATGCACTGCCACATATGG
||||||    ||||| ||||  | ||||| |  || |||    |     |||||| | || | || |||||   | ||  | || ||   |||| ||||||||||||||||||||| ||||| ||  |||| ||||||||||||||||||||||| ||| |||| ||||||||| ||||||||||||
gtattaagccttttgcagttttgctttgtttacagatatt---tggctgttgtatctgagttgttcaattggtta-ttccttaacagACCTGGGCTGTCCTGAAGCCAGGATTCTTGGCTTTGCTTGAAGACCCTTTTGATCCAAAGCTTTTAGACGTCATTATTTTTGATGCATTGCCACATATGG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|66923876|gb|CX110724.1|CX110724
EST:     GCAAAAGCAGCTGGCAAAAG                         GTTTGGGTTGTCCTGAAGCCAGGATTCTTAGCTTTACTCAAAGATCCTTTT
genomic: GCAAAAGCAGCTGGCAAAAGgtattatatt ... ttttcaatagGTTTGGGTTGTCCTGAAGCCAGGATTCTTAGCTTTACTCAAAGATCCTTTT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tagctatcttataatcattgtatttaagatattgaattgaacaatttttcaatagGTTTGGGTTGTCCTGAAGCCAGGATTCTTAGCTTTACTCAAAGATCCTTTTGATCCAAAGCTTTTAGATGTCCTTATCTTTGATGCACTGCCACATATGG
                                            tttttc  CT-rich tract
                    tatttaagatattgaa  TA-rich tract