1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...actggttgatccattctatgccatgtttatatataaaaagtttttttcactatttgtgccctatcggcatatatgcaaaatgccttgactcggttgatagACCAGAATGCCAGTGCAATTCTAAGGGCAGGAGAAGGTGGCGATCGTAAGAAAGCGGGACCAGCTCCAGCAACCAAACCTAATGTCAAACAACCTGCTGC
species | Oryza sativa |
transcript | LOC_Os05g28010.1 |
intron # | 4 |
splice site | 3' |
intron type | U12 (go to U12 genes for details) |
EST: AGAAGGATCTCATTAGTATTATGCATGGGGTATCTATCA ACCAGAATGCCAGTGCAATTCTAAGGGCAGGAGAAGGTGGCGATCGTAAGAEST: gi|88223765|gb|CI223614.1|CI223614
genomic: AGAAGGATCTCATTAGTATTATGCATGGGGTATCTATCAgtatcctttt ... cggttgatagACCAGAATGCCAGTGCAATTCTAAGGGCAGGAGAAGGTGGCGATCGTAAGA
EST: TCACCGAGTTGAGAAGGATCTCATTAGTATTATGCATGGGGTATCTATCA ACCAGAATGCCAGTGCAATTCTAAGGGCAGGAGAAGGTGGCGATCGTAAGAEST: gi|88977292|gb|CI025029.1|CI025029
genomic: TCACCGAGTTGAGAAGGATCTCATTAGTATTATGCATGGGGTATCTATCAgtatcctttt ... cggttgatagACCAGAATGCCAGTGCAATTCTAAGGGCAGGAGAAGGTGGCGATCGTAAGA
EST: TCACCGAGTTGAGAAGGATCTCATTAGTATTATGCATGGGGTATCTATCA ACCAGAATGCCAGTGCAATTCTAAGGGCAGGAGAAGGTGGCGATCGTAAGA
genomic: TCACCGAGTTGAGAAGGATCTCATTAGTATTATGCATGGGGTATCTATCAgtatcctttt ... cggttgatagACCAGAATGCCAGTGCAATTCTAAGGGCAGGAGAAGGTGGCGATCGTAAGA
ttcactatttgtgccctatcggcatatatgcaaaatgccttgactcggttgatagACCAGAATGCCAGTGCAATTCTAAGGGCAGGAGAAGGTGGCGATCGTAAGAAAGCGGGACCAGCTCCAGCAACCAAACCTAATGTCAAACAACCTGCTGC
tgccttgac putative branch site
atatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| actggttgatccattctatgccatgtttatatataaaaagtttttttcactatttgtgccctatcggcatatatgcaaaatgccttgactcggttgatagACCAGAATGCCAGTGCAATTCTAAGGGCAGGAGAAGGTGGCGATCGTAAGAAAGCGGGACCAGCTCCAGCAACCAAACCTAATGTCAAACAACCTGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
-ctggttg
- - - - - - - -ctatgcc
- - - - - - - - - - - - - - - - ataaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcccta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgccttg