1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tattatgttagaaatccttcagagtcaattttgatcaaaatatgtgtagtagtttaatgttgctttctattgtagttctaaaatggtccttcttttccagCCTATAGGAAGCTTGCTAGGAGCTACCATCCTGATGTGAACAA
species | Oryza sativa |
transcript | LOC_Os05g26914.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TTCCACACTTGGTGTTTCAAGAAATGCTAGTAAATCTGAAATCAAGAGTG CCTATCGGAAGCTTGCTAGGAGCTACCATCCTGATGTGAACAEST: gi|58608089|gb|CK036122.1|CK036122
genomic: TTCCACACTTGGTGTTTCAAGAAATGCTAGTAAATCTGAAATCAAGAGTGgtaggtgtgg ... tcttttccagCCTATAGGAAGCTTGCTAGGAGCTACCATCCTGATGTGAACA
EST: TTCCACACTTGGTGTTTCAAGAAATGCTAGTAAATCTGGAATCAAGAGTG CCTATCGGAAGCTTGCTAGGAGCTACCATCCTGATGTGAACAAEST: gi|29685207|gb|CB681482.1|CB681482
genomic: TTCCACACTTGGTGTTTCAAGAAATGCTAGTAAATCTGAAATCAAGAGTGgtaggtgtgg ... tcttttccagCCTATAGGAAGCTTGCTAGGAGCTACCATCCTGATGTGAACAA
EST: TTCCACACTTGGTGTTTCAAGAAATGCTAGTAAATCTGAAATCAAGAGTG CCTATAGGAAGCTTGCTAGGAGCTACCATCCTGATGTGAACAAEST: gi|29620923|gb|CB625934.1|CB625934
genomic: TTCCACACTTGGTGTTTCAAGAAATGCTAGTAAATCTGAAATCAAGAGTGgtaggtgtgg ... tcttttccagCCTATAGGAAGCTTGCTAGGAGCTACCATCCTGATGTGAACAA
EST: TTCCACACTTGGTGTTTCAAGAAATGCTAGTAAATCTGAAATCAAGAGTG CCTATCGGAAGCTTGCTAAGAGCTACCATCCTGATGTGAACAAEST: gi|29680449|gb|CB676724.1|CB676724
genomic: TTCCACACTTGGTGTTTCAAGAAATGCTAGTAAATCTGAAATCAAGAGTGgtaggtgtgg ... tcttttccagCCTATAGGAAGCTTGCTAGGAGCTACCATCCTGATGTGAACAA
EST: TTCCACACTTGGTGTTTCAAGAAATGCTAGTAAATCTGAAATCAAGAGTG CCTATAGGAAGCTTGCTAGGAGCTACCATCCTGATGTGAACAAEST: gi|29681007|gb|CB677282.1|CB677282
genomic: TTCCACACTTGGTGTTTCAAGAAATGCTAGTAAATCTGAAATCAAGAGTGgtaggtgtgg ... tcttttccagCCTATAGGAAGCTTGCTAGGAGCTACCATCCTGATGTGAACAA
EST: TTCCACACTTGGTGTTTCAAGAAATGCTAGTAAATCTGAAATCAAGAGTG CCTATAGGAAGCTTGCTAGGAGCTACCATCCTGATGTGAACAAEST: gi|58660788|gb|CK049468.1|CK049468
genomic: TTCCACACTTGGTGTTTCAAGAAATGCTAGTAAATCTGAAATCAAGAGTGgtaggtgtgg ... tcttttccagCCTATAGGAAGCTTGCTAGGAGCTACCATCCTGATGTGAACAA
EST: TTCCACACTTGGTGTTTCAAGAAATGCTAGTAAATCTGAAATCAAGAGTG CCTATCGGAGGCTTGCTAGGAGCTACCATCCTGATGTGAACAAEST: gi|29680374|gb|CB676649.1|CB676649
genomic: TTCCACACTTGGTGTTTCAAGAAATGCTAGTAAATCTGAAATCAAGAGTGgtaggtgtgg ... tcttttccagCCTATAGGAAGCTTGCTAGGAGCTACCATCCTGATGTGAACAA
EST: TTCCACACTTGGTGTTTCAAGAAATGCTAGTAAATCTGAAATCAAGAGTG CCTATAGGAAGCTTGCTAGGAGCTACCATCCTGATGTGAACAA
genomic: TTCCACACTTGGTGTTTCAAGAAATGCTAGTAAATCTGAAATCAAGAGTGgtaggtgtgg ... tcttttccagCCTATAGGAAGCTTGCTAGGAGCTACCATCCTGATGTGAACAA
gtagtagtttaatgttgctttctattgtagttctaaaatggtccttcttttccagCCTATAGGAAGCTTGCTAGGAGCTACCATCCTGATGTGAACAA
ttctaaa putative branch site (score: 27)
tggtccttcttttcc CT-rich tract
tttaatgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tattatgttagaaatccttcagagtcaattttgatcaaaatatgtgtagtagtttaatgttgctttctattgtagttctaaaatggtccttcttttccagCCTATAGGAAGCTTGCTAGGAGCTACCATCCTGATGTGAACAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- ttatgtt
- - - - - - - -ccttcag
- - - - - - - - - - - - - - - - gatcaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tggtcct