1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtaacatcttcagctcatttcctctgttttcattagcatcacatttcctctagtgttttatacttttatctaagtggttgttggatctatattctgatcttattcctatgctagcagtgtaacatgcacttttctatttttgctgtcaaccagATTCACAAGGTACCTGCTACTGACATGGAGGCTCTGAAGTCCCCTTTGATGGGTCTTTTTGAGAAGCGCAGAGCAAGGAACTTCTTCATTTACGTCCAAG
species | Oryza sativa |
transcript | LOC_Os05g23860.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ATTTGTCATTCAAAGCTGTCGATGGAAGCTATGTCTTCAGCAAAGGGAAG ATTCACAAGGTACCTGCTACTGACATGGAGGCTCTGAAGTCCCCTTTGATGEST: gi|58600989|gb|CK011517.1|CK011517
genomic: ATTTGTCATTCAAAGCTGTCGATGGAAGCTATGTCTTCAGCAAAGGGAAGgtaacatctt ... tgtcaaccagATTCACAAGGTACCTGCTACTGACATGGAGGCTCTGAAGTCCCCTTTGATG
EST: ATTTGTCATTCAAAGCTGTCGATGGAAGCTATGTCTTCAGCAAAGGGAAG ATTCACAAGGTACCTGCTACTGACATGEST: gi|27577069|gb|CA999763.1|CA999763
genomic: ATTTGTCATTCAAAGCTGTCGATGGAAGCTATGTCTTCAGCAAAGGGAAGgtaacatctt ... tgtcaaccagATTCACAAGGTACCTGCTACTGACATG
EST: ATTTGTCATTCAAAGCTGTCGATGGAAGCTATGTCTTCAGCAAAGGGAAG ATTCACAAGGTACCTGCTACTGACAEST: gi|58673621|gb|CK062307.1|CK062307
genomic: ATTTGTCATTCAAAGCTGTCGATGGAAGCTATGTCTTCAGCAAAGGGAAGgtaacatctt ... tgtcaaccagATTCACAAGGTACCTGCTACTGACA
EST: ATTTGTCATTCAAAGCTGTCGATGGAAGCTATGTCTTCAGCAAAGGGAAG ATTCACAAGGTACCTGCTACTGACATGGAGEST: gi|33655650|gb|CF278264.1|CF278264
genomic: ATTTGTCATTCAAAGCTGTCGATGGAAGCTATGTCTTCAGCAAAGGGAAGgtaacatctt ... tgtcaaccagATTCACAAGGTACCTGCTACTGACATGGAG
EST: ATTTGTCATTCAAAGCTGTCGATGGAAGCTATGTCTTCAGCAAAGGGAAG ATTCACAAGGTACCTGCTACTGACATGGAGGCTCTGAAGTCCCCTTTGATGEST: gi|58687035|gb|CK075722.1|CK075722
genomic: ATTTGTCATTCAAAGCTGTCGATGGAAGCTATGTCTTCAGCAAAGGGAAGgtaacatctt ... tgtcaaccagATTCACAAGGTACCTGCTACTGACATGGAGGCTCTGAAGTCCCCTTTGATG
EST: ATTTGTCATTCAAAGCTGTCGATGGAAGCTATGTCTTCAGCAAAGGGAAG ATTCACAAGGTACCTGCTACTGACATGGAGGCTCTGAAGTCCCCTTTGATG
genomic: ATTTGTCATTCAAAGCTGTCGATGGAAGCTATGTCTTCAGCAAAGGGAAGgtaacatctt ... tgtcaaccagATTCACAAGGTACCTGCTACTGACATGGAGGCTCTGAAGTCCCCTTTGATG
cttattcctatgctagcagtgtaacatgcacttttctatttttgctgtcaaccagATTCACAAGGTACCTGCTACTGACATGGAGGCTCTGAAGTCCCCTTTGATGGGTCTTTTTGAGAAGCGCAGAGCAAGGAACTTCTTCATTTACGTCCAAG
gtgtaac putative branch site (score: 29)
cttttctatttttgct putative PPT
acttttctattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaacatcttcagctcatttcctctgttttcattagcatcacatttcctctagtgttttatacttttatctaagtggttgttggatctatattctgatcttattcctatgctagcagtgtaacatgcacttttctatttttgctgtcaaccagATTCACAAGGTACCTGCTACTGACATGGAGGCTCTGAAGTCCCCTTTGATGGGTCTTTTTGAGAAGCGCAGAGCAAGGAACTTCTTCATTTACGTCCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA