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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgttcaataacagagagatccatctattatgtccgtcctcttcctatattctaaaggccaaatattttggtgtgctttcagGAGGGCATCAGATAATGAATTCACAGGGAAAATACCTGATTATTTGGGGAGTTTGACTAATTTGATAGATCT

Basic information

species Oryza sativa
transcript LOC_Os05g16430.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os05g16430.1 (Oryza sativa), 3'ss of exon 4
lower sequence: Vv12s0055g00590.t01 (Vitis vinifera), 3'ss of exon 32
------------------gtacgttcaataacagagagatccatctattatgtcc---------------gtcctcttcctatattctaaaggccaaatattttggtgtgctttcagGAGGGCATCAGATAATGAATTCACAGGGAAAATACCTGATTATTTGGGGAGTTTGACTAATTTGATAGATCT
                   |  ||      |    | |||   | || ||| ||                |||||| |   || ||||||| |   ||| ||| ||   ||| ||||| |||| |||||||||||| ||||||| || ||||||||||   | |||| || | | ||  | |  |   |
gtaagagttttcttggccttctgtctgcacattttgggattgttgtactatatcttgatgagaaaaaggtgtcctcatataattttctaaaag---aatttttggg---gctctcagGTGGGCGTCAGATAATGAACTCACAGGAAACATACCTGATTTCATTGGGAATTGGTCAAAGCTCACTGTCTT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttatgtccgtcctcttcctatattctaaaggccaaatattttggtgtgctttcagGAGGGCATCAGATAATGAATTCACAGGGAAAATACCTGATTATTTGGGGAGTTTGACTAATTTGATAGATCT
                      ttctaaa  putative branch site (score: 2)
                                              tgctttc  putative PPT
                  tatattctaaa  TA-rich tract