1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...cttggaacgtttcttgacagtacttgcgatttagatatgctgcttgatgttatatcttctgcatgtgtaatcacttgttcatgcataaattgacaaccagGATGCTTGACATACTAGAGAAATTTCTTATACGGAAGGGTTACTGCTTTTCTCGCTTTGATGGAACGACTCCCATGAATGCACGCCAATTACTAATTGAT
species | Oryza sativa |
transcript | LOC_Os05g15890.3 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TTATGGACTCTGCAGGGTGACAAAATTCTTCTTTTCAGCTATTCAGTCAG GATGCTNGACATACTAGAGAAATTTCTTATACGGAAGGGTTACTGCTTTTCEST: gi|33794394|gb|CF323081.1|CF323081
genomic: TTATGGACTCTGCAGGGTGACAAAATTCTTCTTTTCAGCTATTCAGTCAGgtgagtggtt ... tgacaaccagGATGCTTGACATACTAGAGAAATTTCTTATACGGAAGGGTTACTGCTTTTC
EST: TTATGGACTCTGCAGGGTGACAAAATTCTTCTTTTCAGCTATTCAGTCAG GATGCTTGACATACTAGAGAAATTTCTTATACGGAAGGGTTACTGCTTTTC
genomic: TTATGGACTCTGCAGGGTGACAAAATTCTTCTTTTCAGCTATTCAGTCAGgtgagtggtt ... tgacaaccagGATGCTTGACATACTAGAGAAATTTCTTATACGGAAGGGTTACTGCTTTTC
gatgttatatcttctgcatgtgtaatcacttgttcatgcataaattgacaaccagGATGCTTGACATACTAGAGAAATTTCTTATACGGAAGGGTTACTGCTTTTCTCGCTTTGATGGAACGACTCCCATGAATGCACGCCAATTACTAATTGAT
aattgac putative branch site (score: 3)
ataaattga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttggaacgtttcttgacagtacttgcgatttagatatgctgcttgatgttatatcttctgcatgtgtaatcacttgttcatgcataaattgacaaccagGATGCTTGACATACTAGAGAAATTTCTTATACGGAAGGGTTACTGCTTTTCTCGCTTTGATGGAACGACTCCCATGAATGCACGCCAATTACTAATTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - -tttcttg
- - - - - - - - - - tacttgc
- - - - - - - - - - - - - - - - - - -tgctgct
- - - - - - - - - - - - - - - - - - - - - - tgatgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catgtgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttcatgc