1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...attactggacacagcccaataacttaggtcctagatgtatctccttttgaatgatcttttcagtttttttatgtatcctttgtcatttgttcatttacagGTTCGGATTGTCAAAGTAGAAAAACGGATTAATGAGATTGTGAACCGGCTGAATAAGACAAAAGTGGAGCGCAAGCCTGACTTAAAGG
species | Oryza sativa |
transcript | LOC_Os05g13440.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AGACTCCATCCATGGATGTGGGTCAAGTTGGTTTTCACAACTCTAAATTG GTTCGGATTGTCAAAGTAGAAAAACGGATTAATGAGATTGTGAACCGGCTGEST: gi|58663146|gb|CK051832.1|CK051832
genomic: AGACTCCATCCATGGATGTGGGTCAAGTTGGTTTTCACAACTCTAAATTGgtgagaagct ... tcatttacagGTTCGGATTGTCAAAGTAGAAAAACGGATTAATGAGATTGTGAACCGGCTG
EST: AGACTCCATCCATGGATGTGGGTCAAGTTGGTTTTCACAACTCTAAATTG GTTCGGATTGTCAAAGTAGAAAAACGGATTAATGAGATTGTGAACCGGCTGEST: gi|8858770|gb|AU096088.1|AU096088
genomic: AGACTCCATCCATGGATGTGGGTCAAGTTGGTTTTCACAACTCTAAATTGgtgagaagct ... tcatttacagGTTCGGATTGTCAAAGTAGAAAAACGGATTAATGAGATTGTGAACCGGCTG
EST: AGACTCCATCCATGGATGTGGGTCAAGTTGGTTTTCACAACTCTAAATTG GTTCGGATTGTCAAAGTAGAAAAACGGATTAATGAGATTGTGAACCGGCTGEST: gi|396941371|gb|HO188580.1|HO188580
genomic: AGACTCCATCCATGGATGTGGGTCAAGTTGGTTTTCACAACTCTAAATTGgtgagaagct ... tcatttacagGTTCGGATTGTCAAAGTAGAAAAACGGATTAATGAGATTGTGAACCGGCTG
EST: AGACTCCATCCATGGATGTGGGTCAAGTTGGTTTTCACAACTCTAAATTG GTTCGGATTGTCAAAGTAGAAAAACGGATTAATGAGATTGTGAACCGGCTG
genomic: AGACTCCATCCATGGATGTGGGTCAAGTTGGTTTTCACAACTCTAAATTGgtgagaagct ... tcatttacagGTTCGGATTGTCAAAGTAGAAAAACGGATTAATGAGATTGTGAACCGGCTG
tttgaatgatcttttcagtttttttatgtatcctttgtcatttgttcatttacagGTTCGGATTGTCAAAGTAGAAAAACGGATTAATGAGATTGTGAACCGGCTGAATAAGACAAAAGTGGAGCGCAAGCCTGACTTAAAGG
tttgttc CT-rich tract
ttttcagtttttttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attactggacacagcccaataacttaggtcctagatgtatctccttttgaatgatcttttcagtttttttatgtatcctttgtcatttgttcatttacagGTTCGGATTGTCAAAGTAGAAAAACGGATTAATGAGATTGTGAACCGGCTGAATAAGACAAAAGTGGAGCGCAAGCCTGACTTAAAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - ctggaca
- - - - - - - - caataac
- - - - - - - - - - - - - - - - - - - - - - - ttgaatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtatcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcatttg