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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaggaaatgttccaccaccttcaatctgtcaatggcatttcttcagacattgttgtaatcttcagacaaatgttttctctctgaattctgcagGCTTCATCAGATTTGAGCATCTTAGACTTTGACATCCCGTTTGCAATGACTTTCGTGATCTCCGGCTCGATCGAAATAGCAACAACCATAGCTATCATGA

Basic information

species Oryza sativa
transcript LOC_Os05g10730.2
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os05g10730.2 (Oryza sativa), 3'ss of exon 4
lower sequence: GLYMA08G20780.1 (Glycine max), 3'ss of exon 6
gtaaaggaaatgttccaccaccttcaatctgtcaatggcatttcttcagacattgttgtaatcttcagacaaatgttttctctctgaattctgcagGCTTCATCAGATTTGAGCATCTTAGACTTTGACATCCCGTTTGCAATGACTTTCGTGATCTCCGGCTCGATCGAAATAGCAACAACCATAGCTATCATGA
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------gtaaggttct--tactgtgtattgaaagactg-atctctattcttgtaactgt--tctttgacccaatat---gtctctaact--tacagGCTTCATCAGATTTGAGTATTTTAGATTTTGATATCCCTTTTACCACCATCTTTGTAACATCTGAAATAGCTGAACTTCTGACAATGATTGGGATAATGG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|87006712|gb|CI285746.1|CI285746
EST:     CACCCATGGTGTTCTTTGATTCCACTCCCACAGGGAGAATCATGACCAGG                         GCTTCATCAGATTTGAGCATCTTAGACTTTGACATCCCGTTTGCAATGACT
genomic: CACCCATGGTGTTCTTTGATTCCACTCCCACAGGGAGAATCATGACCAGGgtaaaggaaa ... aattctgcagGCTTCATCAGATTTGAGCATCTTAGACTTTGACATCCCGTTTGCAATGACT
EST: gi|29679769|gb|CB676044.1|CB676044
EST:     CACCCATGGTGTTCTTTGATTCCACTCCCACAGGGAGAATCATGACCAGG                         GCTTCATCAGATTTGAGCATCTTAGACTTTGACATCCCGTTTGCAATGACT
genomic: CACCCATGGTGTTCTTTGATTCCACTCCCACAGGGAGAATCATGACCAGGgtaaaggaaa ... aattctgcagGCTTCATCAGATTTGAGCATCTTAGACTTTGACATCCCGTTTGCAATGACT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcttcagacattgttgtaatcttcagacaaatgttttctctctgaattctgcagGCTTCATCAGATTTGAGCATCTTAGACTTTGACATCCCGTTTGCAATGACTTTCGTGATCTCCGGCTCGATCGAAATAGCAACAACCATAGCTATCATGA
                             aaatgtttt  TA-rich tract