1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' |
...tattttgcacatactatagttggctgataaatcaatagtccttcaaatgcccattttcagctcactgttgtttaagggcctgcgtttttttcccctgcagGGGTGGTTGTTTCAACTGAAGAGATTCAGTCAATGGTCACTGATATCCTGAAGGAAAACATGGAAGCCATAGTTGAACAGCGATATCATATAAATG
species | Oryza sativa |
transcript | LOC_Os05g08990.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GGGTCCTGATCCATTGGACACAGCAAAGTTTGAAGAGACATGTGGAGTGG GGGTGGTTGTTTCAACTGAAGAGATTCAGTCAATGGTCACTGATATCCTGAEST: gi|29674312|gb|CB670587.1|CB670587
genomic: GGGTCCTGATCCATTGGACACAGCAAAGTTTGAAGAGACATGTGGAGTGGgtacgttctg ... tcccctgcagGGGTGGTTGTTTCAACTGAAGAGATTCAGTCAATGGTCACTGATATCCTGA
EST: ATTGGACACAGCAAAGCTTT-AAGAGACATGTGGAGTGG GGGTGGTTGTTTCAACTGAAGAGATTCAGTCAATGGTCACTGATATTCTGA
genomic: ATTGGACACAGCAAAG-TTTGAAGAGACATGTGGAGTGGgtacgttctg ... tcccctgcagGGGTGGTTGTTTCAACTGAAGAGATTCAGTCAATGGTCACTGATATCCTGA
aatgcccattttcagctcactgttgtttaagggcctgcgtttttttcccctgcagGGGTGGTTGTTTCAACTGAAGAGATTCAGTCAATGGTCACTGATATCCTGAAGGAAAACATGGAAGCCATAGTTGAACAGCGATATCATATAAATG
agctcac putative branch site (score: 18)
cctgcgtttttttccc putative PPT
ttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tattttgcacatactatagttggctgataaatcaatagtccttcaaatgcccattttcagctcactgttgtttaagggcctgcgtttttttcccctgcagGGGTGGTTGTTTCAACTGAAGAGATTCAGTCAATGGTCACTGATATCCTGAAGGAAAACATGGAAGCCATAGTTGAACAGCGATATCATATAAATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- ttttgca
- - - - - - - - - - -ggctgat
- - - - - - - - - - - - - - aaatcaa
- - - - - - - - - - - - - - - - - - - tccttca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgttgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggcctgc