1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' |
...tcatatgataactttattttggttgactcaattgtaattttttggttaaacagaagcagtactgaatataaccatgatgtgccaatttggttctttgtagGATAATGTGGCCTTGCCATCAGATTCTTTCAAGAAGTTACAAGTTTCTGGAATTGTAGAGTCAAAATCAGTTGACACCTTAACAACACTGCAAAAGCAAG
species | Oryza sativa |
transcript | LOC_Os05g07130.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GTCCAAGTAGCGCCACTGCAGATTTTGAAGATCACAATAACTGTAACAAG GATAATGTGGCCTTGCCATCAGATTCTTTCAAGAAGTTACAAGTTTCTGGAEST: gi|29615976|gb|CB620988.1|CB620988
genomic: GTCCAAGTAGCGCCACTGCAGATTTTGAAGATCACAATAACTGTAACAAGgtaagcacta ... ttctttgtagGATAATGTGGCCTTGCCATCAGATTCTTTCAAGAAGTTACAAGTTTCTGGA
EST: GTCCAAGTAGCGCCACTGCAGATTTTGAAGATCACAATAACTGTAACAAG GATAATGTGGCCTTGCCATCAGATTCTTTCAAGAAGTTACAAGTTTCTGGAEST: gi|29616011|gb|CB621023.1|CB621023
genomic: GTCCAAGTAGCGCCACTGCAGATTTTGAAGATCACAATAACTGTAACAAGgtaagcacta ... ttctttgtagGATAATGTGGCCTTGCCATCAGATTCTTTCAAGAAGTTACAAGTTTCTGGA
EST: GTCCAAGTAGCGCCACTGCAGATTTTGAAGATCACAATAACTGTAACAAG GATAATGTGGCCTTGCCATCAGATTCTTTCAAGAAGTTACAAGTTTCTGGAEST: gi|29615974|gb|CB620986.1|CB620986
genomic: GTCCAAGTAGCGCCACTGCAGATTTTGAAGATCACAATAACTGTAACAAGgtaagcacta ... ttctttgtagGATAATGTGGCCTTGCCATCAGATTCTTTCAAGAAGTTACAAGTTTCTGGA
EST: GTCCAAGTAGCGCCACTGCAGATTTTGAAGATCACAATAACTGTAACAAG GATAATGTGGCCTTGCCATCAGATTCTTTCAAGAAGTTACAAGTTTCTGGAEST: gi|58688458|gb|CK077145.1|CK077145
genomic: GTCCAAGTAGCGCCACTGCAGATTTTGAAGATCACAATAACTGTAACAAGgtaagcacta ... ttctttgtagGATAATGTGGCCTTGCCATCAGATTCTTTCAAGAAGTTACAAGTTTCTGGA
EST: GTCCAAGTAGCGCCACTGCAGATTTTGAAGATCACAATAACTGTAACAAG GATAATGTGGCCTTGCCATCAGATTCTTTCAAGAAGTTACAAGTTTCTGGAEST: gi|29612781|gb|CB617794.1|CB617794
genomic: GTCCAAGTAGCGCCACTGCAGATTTTGAAGATCACAATAACTGTAACAAGgtaagcacta ... ttctttgtagGATAATGTGGCCTTGCCATCAGATTCTTTCAAGAAGTTACAAGTTTCTGGA
EST: GTCCAAGTAGCGCCACTGCAGATTTTGAAGATCACAATAACTGTAACAAG GATAATGTGGCCTTGCCATCAGATTCTTTCAAGAAGTTACAAGTTTCTGGA
genomic: GTCCAAGTAGCGCCACTGCAGATTTTGAAGATCACAATAACTGTAACAAGgtaagcacta ... ttctttgtagGATAATGTGGCCTTGCCATCAGATTCTTTCAAGAAGTTACAAGTTTCTGGA
ttaaacagaagcagtactgaatataaccatgatgtgccaatttggttctttgtagGATAATGTGGCCTTGCCATCAGATTCTTTCAAGAAGTTACAAGTTTCTGGAATTGTAGAGTCAAAATCAGTTGACACCTTAACAACACTGCAAAAGCAAG
atataac putative branch site (score: 3)
ttctttgt putative PPT
tgaatataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcatatgataactttattttggttgactcaattgtaattttttggttaaacagaagcagtactgaatataaccatgatgtgccaatttggttctttgtagGATAATGTGGCCTTGCCATCAGATTCTTTCAAGAAGTTACAAGTTTCTGGAATTGTAGAGTCAAAATCAGTTGACACCTTAACAACACTGCAAAAGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - cagaagc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tactgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catgatg