1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...cttttactatttacggaataaggtaataagtaagtcatgctagagcttaatagctttctgtagatttgtagagcataaaaaccaccatttcatgtttcagGCTGCTGCATGGATCATTCTTGGGATATTTTCACTTATCAGACTTGAAGCTGACTACCTTCTTGTTGTTGGAGTTTGCTTGACTCTAAGCCTTGCAAACA
species | Oryza sativa |
transcript | LOC_Os05g06700.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GGATGAACAAAAAGGACTCGTGGCTGTTCTGGTGGACTCTTTACTTGACT GCTGCTGCATGGATCATTCTTGGGATATTTTCACTTATCAGACTTGAAGCTEST: gi|11610325|gb|AU166001.1|AU166001
genomic: GGATGAACAAAAAGGACTCGTGGCTGTTCTGGTGGACTCTTTACTTGACTgtaagtgatc ... catgtttcagGCTGCTGCATGGATCATTCTTGGGATATTTTCACTTATCAGACTTGAAGCT
EST: GNATGACCAAAAAGGACTCGTGGCTGTTCTGGTGNACTCTTTACTTGACT GCTGCTGCATGGATCATTCTTGGGATATTTTCACTTATCAGACTTGAAGCTEST: gi|27920727|gb|CB096535.1|CB096535
genomic: GGATGAACAAAAAGGACTCGTGGCTGTTCTGGTGGACTCTTTACTTGACTgtaagtgatc ... catgtttcagGCTGCTGCATGGATCATTCTTGGGATATTTTCACTTATCAGACTTGAAGCT
EST: GGATGAACAAAAAGGACTCGTGGCTGTTCTGGTGGACTCTTTACTTGACT GCTGCTGCATGGATCATTCTTGGGATATTTTCACTTATCAGACTTGAAGCTEST: gi|88419596|gb|CI686814.1|CI686814
genomic: GGATGAACAAAAAGGACTCGTGGCTGTTCTGGTGGACTCTTTACTTGACTgtaagtgatc ... catgtttcagGCTGCTGCATGGATCATTCTTGGGATATTTTCACTTATCAGACTTGAAGCT
EST: GGATGAACAAAAAGGACTCGTGGCTGTTCTGGTGGACTCTTTACTTGACT GCTGCTGCATGGATCATTCTTGGEST: gi|88836836|gb|CI014837.1|CI014837
genomic: GGATGAACAAAAAGGACTCGTGGCTGTTCTGGTGGACTCTTTACTTGACTgtaagtgatc ... catgtttcagGCTGCTGCATGGATCATTCTTGG
EST: GGACTCTTTACTTGACT GCTGCTGCATGGATCATTCTTGGGATATTTTCACTTATCAGACTTGAAGCTEST: gi|88577787|gb|CI674397.1|CI674397
genomic: GGACTCTTTACTTGACTgtaagtgatc ... catgtttcagGCTGCTGCATGGATCATTCTTGGGATATTTTCACTTATCAGACTTGAAGCT
EST: GGATGAACAAAAAGGACTCGTGGCTGTTCTGGTGGACTCTTTACTTGACT GCTGCTGCATGGATCATTCTTGGGATATTTTCACTTATCAGACTTGAAGCTEST: gi|88402439|gb|CI596300.1|CI596300
genomic: GGATGAACAAAAAGGACTCGTGGCTGTTCTGGTGGACTCTTTACTTGACTgtaagtgatc ... catgtttcagGCTGCTGCATGGATCATTCTTGGGATATTTTCACTTATCAGACTTGAAGCT
EST: GGATGAACAAAAAGGACTCGTGGCTGTTCTGGTGGACTCTTTACTTGACT GCTGCTGCATGGATCATTCT
genomic: GGATGAACAAAAAGGACTCGTGGCTGTTCTGGTGGACTCTTTACTTGACTgtaagtgatc ... catgtttcagGCTGCTGCATGGATCATTCT
cttaatagctttctgtagatttgtagagcataaaaaccaccatttcatgtttcagGCTGCTGCATGGATCATTCTTGGGATATTTTCACTTATCAGACTTGAAGCTGACTACCTTCTTGTTGTTGGAGTTTGCTTGACTCTAAGCCTTGCAAACA
gcttaat putative branch site (score: 34)
ccatttc putative PPT
ataaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttttactatttacggaataaggtaataagtaagtcatgctagagcttaatagctttctgtagatttgtagagcataaaaaccaccatttcatgtttcagGCTGCTGCATGGATCATTCTTGGGATATTTTCACTTATCAGACTTGAAGCTGACTACCTTCTTGTTGTTGGAGTTTGCTTGACTCTAAGCCTTGCAAACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - -catgcta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ataaaaa