Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatcaattggtttgtttactttattctgcttttgtttattctcttcatttcattttatgacctgacctctgatgtcttgtgtagGGTGGTGTAATTACGGAGCGGTGCTACGGCTGTGGACGATGCTTGTCGGTTTGCCCTTATGACAGAATAA

Basic information

species Oryza sativa
transcript LOC_Os05g06510.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os05g06510.1 (Oryza sativa), 3'ss of exon 4
lower sequence: GRMZM5G864166_T01 (Zea mays), 3'ss of exon 4
gtatcaattggtttg----tttacttt----attctgcttttgtttattctcttcatttcattttatgacctgacctctgatgtcttgtgtagGGTGGTGTAATTACGGAGCGGTGCTACGGCTGTGGACGATGCTTGTCGGTTTGCCCTTATGACAGAATAA
|||||| ||| ||||    |||| ||     ||||||||  ||||   |   |     ||||||| |           |  ||  || ||||||||||||||||||| ||||||||||| || ||||| || |||||| | |||||||| |||||||||||||
gtatcagttgctttggctctttagttctttaattctgctcctgttatcttcatgagcctcattttctttataagatgattctgctttttgtagGGTGGTGTAATTACTGAGCGGTGCTATGGATGTGGTCGGTGCTTGCCAGTTTGCCCGTATGACAGAATAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29661372|gb|CB657647.1|CB657647
EST:     TGATTGAGGAAGAGCACTCTCAGTCTGATCCTTCATGTGGAAAACTTGAG                         GGTGGTGTAATTACGGAGCGGTGCTACGGCTGTGGACGATGCTTGTCGGTT
genomic: TGATTGAGGAAGAGCACTCTCAGTCTGATCCTTCATGTGGAAAACTTGAGgtatcaattg ... tcttgtgtagGGTGGTGTAATTACGGAGCGGTGCTACGGCTGTGGACGATGCTTGTCGGTT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttgtttattctcttcatttcattttatgacctgacctctgatgtcttgtgtagGGTGGTGTAATTACGGAGCGGTGCTACGGCTGTGGACGATGCTTGTCGGTTTGCCCTTATGACAGAATAA
              ttcatttcattttat  TA-rich tract