1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...tttcattatttgttgaacagttggctattggcaaaccaacatgctatattagctttcaaagtcccaacactgttgtaaatctttctgccttgtctttcagCCACCAATGTAAAGATAGCTGCAGTTCCTTCTAGTGTCGTGGTTCTTACCCCAGAGACCTTCGACTCTGTTGTCCTTGATGAAACCAAAGATGTCCTTGT
species | Oryza sativa |
transcript | LOC_Os05g06430.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AGGTCAACGTACCGCGGAAGCCCTTGCAGAATATGTTAACTCTGAAGCAG CCACCAATGTAAAGATAGCTGCAGTTCCTTCTAGTGTCGTGGTTCTTACEST: gi|58662435|gb|CK051121.1|CK051121
genomic: AGGTCAACGTACCGCGGAAGCCCTTGCAGAATATGTTAACTCTGAAGCAGgtagacgaac ... tgtctttcagCCACCAATGTAAAGATAGCTGCAGTTCCTTCTAGTGTCGTGGTTCTTAC
EST: AGGTCAACGTACCGCGGAAGCCCTTGCAGAATATGTTAACTCTGAAGCAG CCACCAATGTAAAGATAGCTGCAGTTCCTTCTAGTGTCGTGGTTCTTACCCEST: gi|58608597|gb|CK036630.1|CK036630
genomic: AGGTCAACGTACCGCGGAAGCCCTTGCAGAATATGTTAACTCTGAAGCAGgtagacgaac ... tgtctttcagCCACCAATGTAAAGATAGCTGCAGTTCCTTCTAGTGTCGTGGTTCTTACCC
EST: AGGTCAACGTACCGCGGAAGCCCTTGCAGAATATGTTAACTCTGAAGCAG GCACCAATGTAAAGATAGCTGCAGTTCCTTCTAGTGTCGTGGTTCTTACCCEST: gi|58684543|gb|CK073230.1|CK073230
genomic: AGGTCAACGTACCGCGGAAGCCCTTGCAGAATATGTTAACTCTGAAGCAGgtagacgaac ... tgtctttcagCCACCAATGTAAAGATAGCTGCAGTTCCTTCTAGTGTCGTGGTTCTTACCC
EST: AGGTCAACGTACCGCGGAAGCCCTTGCAGAATATGTTAACTCTGAAGCAG CCACCAATGTAAAGATAGCTGCAGTTCCTTCTAGTGTCGTGGTTCTTACCCEST: gi|58657295|gb|CK045975.1|CK045975
genomic: AGGTCAACGTACCGCGGAAGCCCTTGCAGAATATGTTAACTCTGAAGCAGgtagacgaac ... tgtctttcagCCACCAATGTAAAGATAGCTGCAGTTCCTTCTAGTGTCGTGGTTCTTACCC
EST: AGGTCAACGTACCGCGGAAGCCCTTGCAGAATATGTTAACTCTGAAGCAG CCACCAATGTAAAGATAGCTGCAGTTCCTTCTAGTGTCGTGEST: gi|27577315|gb|CB000010.1|CB000010
genomic: AGGTCAACGTACCGCGGAAGCCCTTGCAGAATATGTTAACTCTGAAGCAGgtagacgaac ... tgtctttcagCCACCAATGTAAAGATAGCTGCAGTTCCTTCTAGTGTCGTG
EST: AGGTCAACGTACCGCGGAAGCCCTTGCAGAATATGTTAACTCTGAAGCAG CCACCAATGTAAAGATAGCTGCAGTTCCTTCTAGTGTCGTGGTTCTTACCCEST: gi|27577494|gb|CB000189.1|CB000189
genomic: AGGTCAACGTACCGCGGAAGCCCTTGCAGAATATGTTAACTCTGAAGCAGgtagacgaac ... tgtctttcagCCACCAATGTAAAGATAGCTGCAGTTCCTTCTAGTGTCGTGGTTCTTACCC
EST: AGGTCAACGTACCGCGGAAGCCCTTGCAGAATATGTTAACTCTGAAGCAG CCACCAATGTAAAGATAGCTGCAGTTCCTTCTAGTGTCGTGGTTCTTACCCEST: gi|58653719|gb|CK042399.1|CK042399
genomic: AGGTCAACGTACCGCGGAAGCCCTTGCAGAATATGTTAACTCTGAAGCAGgtagacgaac ... tgtctttcagCCACCAATGTAAAGATAGCTGCAGTTCCTTCTAGTGTCGTGGTTCTTACCC
EST: AGGTCAACGTACCGCGGAAGCCCTTGCAGAATATGTTAACTCTGAAGCAG CCACCAATGTAAAGATAGCTGCAGTTCCTTCTAGTGTCGTGGTTCTTACCCEST: gi|27576419|gb|CA999113.1|CA999113
genomic: AGGTCAACGTACCGCGGAAGCCCTTGCAGAATATGTTAACTCTGAAGCAGgtagacgaac ... tgtctttcagCCACCAATGTAAAGATAGCTGCAGTTCCTTCTAGTGTCGTGGTTCTTACCC
EST: AGGTCAACGTACCGCGGAAGCCCTTGCAAAATATGTTAACTCTGAAGCAG CCACCAATGTAAAGATAGCTGCAGTTCCTTCTAGTGTCGNGGTTCTTACCCEST: gi|58653948|gb|CK042628.1|CK042628
genomic: AGGTCAACGTACCGCGGAAGCCCTTGCAGAATATGTTAACTCTGAAGCAGgtagacgaac ... tgtctttcagCCACCAATGTAAAGATAGCTGCAGTTCCTTCTAGTGTCGTGGTTCTTACCC
EST: AGGTCAACGTACCGCGGAAGCCCTTGCAGAATATGTTAACTCTGAAGCAG GCAGCAATGTAAAGATAGCTGCAGTTCCTTCTAGTGTCGTGGTTCTTACCCEST: gi|58659841|gb|CK048521.1|CK048521
genomic: AGGTCAACGTACCGCGGAAGCCCTTGCAGAATATGTTAACTCTGAAGCAGgtagacgaac ... tgtctttcagCCACCAATGTAAAGATAGCTGCAGTTCCTTCTAGTGTCGTGGTTCTTACCC
EST: AGGTCAACGTACCGCGGAAGCCCTTGCAGAATATGTTAACTCTGAAGCAG CCACCAATGTAAAGATAGCTGCAGTTCCTTCTAGTGTCGTGGTTCTTACCCEST: gi|58690891|gb|CK079578.1|CK079578
genomic: AGGTCAACGTACCGCGGAAGCCCTTGCAGAATATGTTAACTCTGAAGCAGgtagacgaac ... tgtctttcagCCACCAATGTAAAGATAGCTGCAGTTCCTTCTAGTGTCGTGGTTCTTACCC
EST: AGGTCAACGTACCGCGGAAGCCCTTGCAGAATATGTTAACTCTGAAGCAG CCACCAATGTAAAGATAGCTGCAGTTCCTTCTAGTGTCGTGGTTCTTACCCEST: gi|12622813|gb|AU173026.1|AU173026
genomic: AGGTCAACGTACCGCGGAAGCCCTTGCAGAATATGTTAACTCTGAAGCAGgtagacgaac ... tgtctttcagCCACCAATGTAAAGATAGCTGCAGTTCCTTCTAGTGTCGTGGTTCTTACCC
EST: AGGTCAACGTACCGCGGAAGCCCTTGCAGAATATGTTAACTCTGAAGCAG CCACCAATGTAAAGATAGCTGCAGTTCCTTCTAGTGTCGTGGTTCTTACCC
genomic: AGGTCAACGTACCGCGGAAGCCCTTGCAGAATATGTTAACTCTGAAGCAGgtagacgaac ... tgtctttcagCCACCAATGTAAAGATAGCTGCAGTTCCTTCTAGTGTCGTGGTTCTTACCC
atattagctttcaaagtcccaacactgttgtaaatctttctgccttgtctttcagCCACCAATGTAAAGATAGCTGCAGTTCCTTCTAGTGTCGTGGTTCTTACCCCAGAGACCTTCGACTCTGTTGTCCTTGATGAAACCAAAGATGTCCTTGT
tctttctgccttgtct CT-rich tract
taaatcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttcattatttgttgaacagttggctattggcaaaccaacatgctatattagctttcaaagtcccaacactgttgtaaatctttctgccttgtctttcagCCACCAATGTAAAGATAGCTGCAGTTCCTTCTAGTGTCGTGGTTCTTACCCCAGAGACCTTCGACTCTGTTGTCCTTGATGAAACCAAAGATGTCCTTGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
tttcatt
- - - - - tgttgaa
- - - - - - - - - - - - - - - - aaaccaa
- - - - - - - - - - - - - - - - - - - -catgcta
- - - - - - - - - - - - - - - - - - - - - - - - - -gctttca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgttgt