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...tacaaacatgatttgttcaaagtctcaaaccttgcatcctcaaactttgatatgttgctctggccgctaagattttccttttttctaatggacatatcagGTGCCATGACATTGTTCAAAAAACTTGATGTTGGTCCACTCCAGCTTGGGGACTATCTTG
species | Oryza sativa |
transcript | LOC_Os05g05590.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TTTATTTGGTGCTGTGGGGACATTGATATCCTTTGTGATAATCTCTCTAG GTGCCATGACATTGTTCAAAAAACTTGATGTTGGTCCACTCCAGCTTGGGGEST: gi|29628630|gb|CB633641.1|CB633641
genomic: TTTATTTGGTGCTGTGGGGACATTGATATCCTTTGTGATAATCTCTCTAGgtaagttgct ... gacatatcagGTGCCATGACATTGTTCAAAAAACTTGATGTTGGTCCACTCCAGCTTGGGG
EST: TTTATTTGGTGCTGTGGGGACATTGATATCCTTTGTGATAATCTCTCTAG GTGCCATGACATTGTTCAAAAAACTTGATGTTGGTCCACTCCAGCTTGGGGEST: gi|58663671|gb|CK052357.1|CK052357
genomic: TTTATTTGGTGCTGTGGGGACATTGATATCCTTTGTGATAATCTCTCTAGgtaagttgct ... gacatatcagGTGCCATGACATTGTTCAAAAAACTTGATGTTGGTCCACTCCAGCTTGGGG
EST: TTTATTTGGTGCTGTGGGGACATTGATATCCTTTGTGATAATCTCTCTAG GTGCCATGACATTGTTCAAAAAACTTGATGTTGGTCCACTCCAGCTTGGGGEST: gi|29633364|gb|CB638373.1|CB638373
genomic: TTTATTTGGTGCTGTGGGGACATTGATATCCTTTGTGATAATCTCTCTAGgtaagttgct ... gacatatcagGTGCCATGACATTGTTCAAAAAACTTGATGTTGGTCCACTCCAGCTTGGGG
EST: TTTATTTGGTGCTGTGGGGACATTGATATCCTTTGTGATAATCTCTCTAG GTGCCATGACATTGTTCAAAAAACTTGATGTTGGTCCACTCCAGCTTGGGG
genomic: TTTATTTGGTGCTGTGGGGACATTGATATCCTTTGTGATAATCTCTCTAGgtaagttgct ... gacatatcagGTGCCATGACATTGTTCAAAAAACTTGATGTTGGTCCACTCCAGCTTGGGG
tttgatatgttgctctggccgctaagattttccttttttctaatggacatatcagGTGCCATGACATTGTTCAAAAAACTTGATGTTGGTCCACTCCAGCTTGGGGACTATCTTG
ttctaat putative branch site (score: 15)
ttttttctaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tacaaacatgatttgttcaaagtctcaaaccttgcatcctcaaactttgatatgttgctctggccgctaagattttccttttttctaatggacatatcagGTGCCATGACATTGTTCAAAAAACTTGATGTTGGTCCACTCCAGCTTGGGGACTATCTTG
- - -acatgat
- - - - - - - - - - - - - - - - tgcatcc
- - - - - - - - - - - - - - - - - - - - - - - - - - tgttgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gccgcta