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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattgaatgagagtaatagagtagtaattcttctttttagcatttatgtatcatattcctaatgctgcagttcttttccctcccatctggctatttcagAAGTTCATTGAGGCAACACGCGAAACAAGCGTTACCTTTATCATCGGAAAGTTTGATGGAATTCTTGGTCTTGGCTACCCTGAAATCTCTGTTGGGAAAG

Basic information

species Oryza sativa
transcript LOC_Os05g04630.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29631562|gb|CB636571.1|CB636571
EST:     TCTTCAGTAAGGATAATGTGTTGGTTGGAGACCTTGTAGTGAAAAACCAG                         AAGTTCATTGAGGCAACACGCGAAACAAGCGTTA
genomic: TCTTCAGTAAGGATAATGTGTTGGTTGGAGACCTTGTAGTGAAAAACCAGgtaattgaat ... gctatttcagAAGTTCATTGAGGCAACACGCGAAACAAGCGTTA
EST: gi|29676557|gb|CB672832.1|CB672832
EST:     TCTTCACTAAGGATAATGTGTTGGTTGGAGACCTTGTAATGAAAAACCAG                         AAGATCATTGAGGCAACACGCGAAACAAGCGTTACCTTTATCATCTGAAAG
genomic: TCTTCAGTAAGGATAATGTGTTGGTTGGAGACCTTGTAGTGAAAAACCAGgtaattgaat ... gctatttcagAAGTTCATTGAGGCAACACGCGAAACAAGCGTTACCTTTATCATCGGAAAG
EST: gi|58695107|gb|CK083794.1|CK083794
EST:     TCTTCAGTAAGGATAATGTGTTGGTTGGAGACCTTGTAGTGAAAAACCAG                         AAGTTCATTGAGGCAACACGCGAAACAAGCGTTACCTTTATCATCGGAAAG
genomic: TCTTCAGTAAGGATAATGTGTTGGTTGGAGACCTTGTAGTGAAAAACCAGgtaattgaat ... gctatttcagAAGTTCATTGAGGCAACACGCGAAACAAGCGTTACCTTTATCATCGGAAAG
EST: gi|58662934|gb|CK051620.1|CK051620
EST:     TCTTCAGTAAGGATAATGTGTTGGTTGGAGACCTTGTAGTGAAAAACCAG                         AAGTTCATTGAGGCAACACGCGAAACAAGCGTTACCTTTATCATCGGAAAG
genomic: TCTTCAGTAAGGATAATGTGTTGGTTGGAGACCTTGTAGTGAAAAACCAGgtaattgaat ... gctatttcagAAGTTCATTGAGGCAACACGCGAAACAAGCGTTACCTTTATCATCGGAAAG
EST: gi|29615431|gb|CB620443.1|CB620443
EST:     TCTTCAGTAAGGATAATGTGTTGGTTGGAGACCTTGTAGTGAAAAACCAG                         AAGTTCATTGAGGCAACACGCGAAACAAGCGTTACCTTTATCATCGGAAAG
genomic: TCTTCAGTAAGGATAATGTGTTGGTTGGAGACCTTGTAGTGAAAAACCAGgtaattgaat ... gctatttcagAAGTTCATTGAGGCAACACGCGAAACAAGCGTTACCTTTATCATCGGAAAG
EST: gi|29678514|gb|CB674789.1|CB674789
EST:     TCTTCAGTAAGGATAATGTGTTGGTTGGAGACCTTGTAGTGAAAAACCAG                         AAGTTCATTGAGGCAACACGCGAAACAAGCGTTACCTTTATCATCGGAAAG
genomic: TCTTCAGTAAGGATAATGTGTTGGTTGGAGACCTTGTAGTGAAAAACCAGgtaattgaat ... gctatttcagAAGTTCATTGAGGCAACACGCGAAACAAGCGTTACCTTTATCATCGGAAAG
EST: gi|33677805|gb|CF306044.1|CF306044
EST:     CTTCAGTAAGGAATAATGTGTTGGTTGGAGACCTTGTAGTGAAAAACCAG                         AAGTTCATTGAGGCAACACGTGAAACAAGCGTTACCTTTATCATCGGAAAG
genomic: CTTCAGTAAGGA-TAATGTGTTGGTTGGAGACCTTGTAGTGAAAAACCAGgtaattgaat ... gctatttcagAAGTTCATTGAGGCAACACGCGAAACAAGCGTTACCTTTATCATCGGAAAG
EST: gi|29634261|gb|CB639270.1|CB639270
EST:     TCTTCAGTAAGGATAATGTGTTGGTTGGAGACCTTGTAGTGAAAAACCAG                         AAGTTCATTGAGGCAACACGCGAAACAAGCGTTACCTTTATCATCGGAAAG
genomic: TCTTCAGTAAGGATAATGTGTTGGTTGGAGACCTTGTAGTGAAAAACCAGgtaattgaat ... gctatttcagAAGTTCATTGAGGCAACACGCGAAACAAGCGTTACCTTTATCATCGGAAAG
EST: gi|29680077|gb|CB676352.1|CB676352
EST:     TCTTCAGTAAGGATAATGTGTTGGTTGGAGACCTTGTAGTGAAAAACCAG                         AAGTTCATTGAGGCAACACGCGAAACAAGCGTTACCTTTATCATCGGAAAG
genomic: TCTTCAGTAAGGATAATGTGTTGGTTGGAGACCTTGTAGTGAAAAACCAGgtaattgaat ... gctatttcagAAGTTCATTGAGGCAACACGCGAAACAAGCGTTACCTTTATCATCGGAAAG
EST: gi|117234267|gb|CT842364.1|CT842364
EST:     TCTTCAGTAAGGATAATGTGTTGGTTGGAGACCTTGTAGTGAAAAACCAG                         AAGTTCATTGAGGCAACACGCGAAACAAGCGTTACCTTTATCATCGGAAAG
genomic: TCTTCAGTAAGGATAATGTGTTGGTTGGAGACCTTGTAGTGAAAAACCAGgtaattgaat ... gctatttcagAAGTTCATTGAGGCAACACGCGAAACAAGCGTTACCTTTATCATCGGAAAG
EST: gi|29676212|gb|CB672487.1|CB672487
EST:     TCTTCAGTAAGGATAATGTGTTGGTTGGAGACCTTGTAGTGAAAAACCAG                         AAGTTCATTGAGGCAACACGCGAAACAAGCGTTACCTTTATCATCGGAAAG
genomic: TCTTCAGTAAGGATAATGTGTTGGTTGGAGACCTTGTAGTGAAAAACCAGgtaattgaat ... gctatttcagAAGTTCATTGAGGCAACACGCGAAACAAGCGTTACCTTTATCATCGGAAAG
EST: gi|4714998|gb|AU056115.1|AU056115
EST:     CTTCAGTAAGGATAATGTGTTGGTTGGAGACCTTGTAGTGAAAAAACCAG                         AAGTTCATTGANGCAACACGCGAAACAAGCGTTACCTTTATCATCGGAAA
genomic: CTTCAGTAAGGATAATGTGTTGGTTGGAGACCTTGTAGTGAAAAA-CCAGgtaattgaat ... gctatttcagAAGTTCATTGAGGCAACACGCGAAACAAGCGTTACCTTTATCATCGGAAA
EST: gi|58588210|gb|CF986518.1|CF986518
EST:     TCTTCAGTAAGGATAATGTGTTGGTTGGAGACCTTGTAGTGAAAAACCAG                         AAGTTCATTGAGGCAACACGCGAAACAAGCGTTACCTTTATCATCGGAAAG
genomic: TCTTCAGTAAGGATAATGTGTTGGTTGGAGACCTTGTAGTGAAAAACCAGgtaattgaat ... gctatttcagAAGTTCATTGAGGCAACACGCGAAACAAGCGTTACCTTTATCATCGGAAAG
EST: gi|58672443|gb|CK061129.1|CK061129
EST:     TCTTCAGTAAGGATAATGTGTTGGTTGGAGACCTTGTAGTGAAAAACCAG                         AAGTTCATTGAGGCAACACGCGAAACAAGCGTTACCTTTATCATCGGAAAG
genomic: TCTTCAGTAAGGATAATGTGTTGGTTGGAGACCTTGTAGTGAAAAACCAGgtaattgaat ... gctatttcagAAGTTCATTGAGGCAACACGCGAAACAAGCGTTACCTTTATCATCGGAAAG
EST: gi|33676712|gb|CF304951.1|CF304951
EST:     TCTTCAGTAAGGATAATGTGTTGGTTGGAGACCTTGTAGTGAAAAACCAG                         AAGTTCATTGAGGCAACACGTGAAACAAGCGTTACCTTTATCATCGGAAAG
genomic: TCTTCAGTAAGGATAATGTGTTGGTTGGAGACCTTGTAGTGAAAAACCAGgtaattgaat ... gctatttcagAAGTTCATTGAGGCAACACGCGAAACAAGCGTTACCTTTATCATCGGAAAG
EST: gi|58689178|gb|CK077865.1|CK077865
EST:     TCTTCAGTAAGGATAATGTGTTGGTTGGAGACCTTGTAGTGAAAAACCAG                         AAGTTCATTGAGGCAACACGCGAAACAAGCGTTACCTTTATCATCGGAAAG
genomic: TCTTCAGTAAGGATAATGTGTTGGTTGGAGACCTTGTAGTGAAAAACCAGgtaattgaat ... gctatttcagAAGTTCATTGAGGCAACACGCGAAACAAGCGTTACCTTTATCATCGGAAAG
EST: gi|58688874|gb|CK077561.1|CK077561
EST:     TCTTCAGTAAGGATAATGTGTTGGTTGGAGACCTTGTAGTGAAAAACCAG                         AAGTTCATTGAGGCAACACGCGAAACAAGCGTTACCTTTATCATCGGAAAG
genomic: TCTTCAGTAAGGATAATGTGTTGGTTGGAGACCTTGTAGTGAAAAACCAGgtaattgaat ... gctatttcagAAGTTCATTGAGGCAACACGCGAAACAAGCGTTACCTTTATCATCGGAAAG
EST: gi|58660269|gb|CK048949.1|CK048949
EST:     TCTTCAGTAAGGATAATGTGTTGGTTGGAGACCTTGTAGTGAAAAACCAG                         AAGTTCATTGAGGCAACACGCGAAACAAGCGTTACCTTTA
genomic: TCTTCAGTAAGGATAATGTGTTGGTTGGAGACCTTGTAGTGAAAAACCAGgtaattgaat ... gctatttcagAAGTTCATTGAGGCAACACGCGAAACAAGCGTTACCTTTA
EST: gi|58695208|gb|CK083895.1|CK083895
EST:     TCTTCAGTAAGGATAATGTGTTGGTTGGAGACCTTGTAGTGAAAAACCAG                         AAGTTCATTGAGGCAACACGCGAAACAAGCGTTACCTTTATCATCGGAAAG
genomic: TCTTCAGTAAGGATAATGTGTTGGTTGGAGACCTTGTAGTGAAAAACCAGgtaattgaat ... gctatttcagAAGTTCATTGAGGCAACACGCGAAACAAGCGTTACCTTTATCATCGGAAAG
EST: gi|29678428|gb|CB674703.1|CB674703
EST:     TCTTCAGTAAGGATAATGTGTTGGTTGGAGACCTTGTAGTGAAAAACCAG                         AAGTTCATTGAGGCAACACGCGAAACAAGCGTTACCTTTATCATCGGAAAG
genomic: TCTTCAGTAAGGATAATGTGTTGGTTGGAGACCTTGTAGTGAAAAACCAGgtaattgaat ... gctatttcagAAGTTCATTGAGGCAACACGCGAAACAAGCGTTACCTTTATCATCGGAAAG
EST: gi|58692954|gb|CK081641.1|CK081641
EST:     TCTTCAGTAAGGATAATGTGTTGGTTGGAGACCTTGTAGTGAAAAACCAG                         AAGTTCATTGAGGCAACACGCGAAACAAGCGTTACCTTTATCATCGGAAAG
genomic: TCTTCAGTAAGGATAATGTGTTGGTTGGAGACCTTGTAGTGAAAAACCAGgtaattgaat ... gctatttcagAAGTTCATTGAGGCAACACGCGAAACAAGCGTTACCTTTATCATCGGAAAG
EST: gi|29638564|gb|CB643573.1|CB643573
EST:     TCTTCAGTAAGGATAATGTGTTGGTTGGAGACCTTGTAGTGAAAAACCAG                         AAGTTCATTGAGGCAACACGCGAAACAAGCGTTACCTTTATCATCGGAAAG
genomic: TCTTCAGTAAGGATAATGTGTTGGTTGGAGACCTTGTAGTGAAAAACCAGgtaattgaat ... gctatttcagAAGTTCATTGAGGCAACACGCGAAACAAGCGTTACCTTTATCATCGGAAAG
EST: gi|29676404|gb|CB672679.1|CB672679
EST:     TCTTCAGTAAGGATAATGTGTTGGTTGGAGACCTTGTAGTGAAAAACCAG                         AAGTTCATTGAGGCAACACGCGAAACAAGCGTTACCTTTATCATCGGAAAG
genomic: TCTTCAGTAAGGATAATGTGTTGGTTGGAGACCTTGTAGTGAAAAACCAGgtaattgaat ... gctatttcagAAGTTCATTGAGGCAACACGCGAAACAAGCGTTACCTTTATCATCGGAAAG
EST: gi|27577353|gb|CB000048.1|CB000048
EST:     TCTTCAGTAAGGATAATGTGTTGGTTGGAGACCTTGTAGTGAAAAACCAG                         AAGTTCATTGAGGCAACACGCGAAACAAGCGTTACCTTTATCATCGGAAAG
genomic: TCTTCAGTAAGGATAATGTGTTGGTTGGAGACCTTGTAGTGAAAAACCAGgtaattgaat ... gctatttcagAAGTTCATTGAGGCAACACGCGAAACAAGCGTTACCTTTATCATCGGAAAG
EST: gi|33670080|gb|CF298319.1|CF298319
EST:     CTTCAGTAAGGAATAATGTGTTGGTTGGAGACCTTGTAGTGAAAAACCAG                         AAGTTCATTGAGGCAACACGTGAAACAAGCGTTACCTTTATCATCGGAAAG
genomic: CTTCAGTAAGGA-TAATGTGTTGGTTGGAGACCTTGTAGTGAAAAACCAGgtaattgaat ... gctatttcagAAGTTCATTGAGGCAACACGCGAAACAAGCGTTACCTTTATCATCGGAAAG
EST: gi|29680749|gb|CB677024.1|CB677024
EST:     TCTTCAGTAAGGATAATGTGTTGGTTGGAGACCTTGTAGTGAAAAACCAG                         AAGTTCATTGAGGCAACACGCGAAACAAGCGTTACCTTTATCATCGGAAAG
genomic: TCTTCAGTAAGGATAATGTGTTGGTTGGAGACCTTGTAGTGAAAAACCAGgtaattgaat ... gctatttcagAAGTTCATTGAGGCAACACGCGAAACAAGCGTTACCTTTATCATCGGAAAG
EST: gi|29626867|gb|CB631878.1|CB631878
EST:     TCTTCAGTAAGGATACTGTGTTGGTTGGAGACCTTGTATTGAAAAACCAG                         AAGTTCATTGAGGCAACACGCGAAACAAGCGTTACCTTTATCATCGGAAAG
genomic: TCTTCAGTAAGGATAATGTGTTGGTTGGAGACCTTGTAGTGAAAAACCAGgtaattgaat ... gctatttcagAAGTTCATTGAGGCAACACGCGAAACAAGCGTTACCTTTATCATCGGAAAG
EST: gi|25799139|gb|CA755100.1|CA755100
EST:     TCTTCAGTAAGGATAATGTGTTGGTTGGAGACCTTGTAGTGAAAAACCAG                         AAGTTCATTGAGGCAACACGCGAAACAAGCGTTACCTTTATCATCGGAAAG
genomic: TCTTCAGTAAGGATAATGTGTTGGTTGGAGACCTTGTAGTGAAAAACCAGgtaattgaat ... gctatttcagAAGTTCATTGAGGCAACACGCGAAACAAGCGTTACCTTTATCATCGGAAAG
EST: gi|29619013|gb|CB624025.1|CB624025
EST:     TCTTCAGTAAGGATAATGTGTTGGTTGGAGACCTTGTAGTGAAAAACCAG                         AAGTTCATTGAGGCAACACGCGAAACAAGCGTTACCTTTATCATCGGAAAG
genomic: TCTTCAGTAAGGATAATGTGTTGGTTGGAGACCTTGTAGTGAAAAACCAGgtaattgaat ... gctatttcagAAGTTCATTGAGGCAACACGCGAAACAAGCGTTACCTTTATCATCGGAAAG
EST: gi|29646767|gb|CB651774.1|CB651774
EST:     TCTTCAGTAAGGATAATGTGTTGGTTGGAGACCTTGTAGTGAAAAACCAG                         AAGTTCATTGAGGCAACACGCGAAACAAGCGTTACCTTTATCATCGGAAAG
genomic: TCTTCAGTAAGGATAATGTGTTGGTTGGAGACCTTGTAGTGAAAAACCAGgtaattgaat ... gctatttcagAAGTTCATTGAGGCAACACGCGAAACAAGCGTTACCTTTATCATCGGAAAG
EST: gi|700515|gb|D46806.1|D46806
EST:     TCTTCAGTAAGGATAATGTGTTGGTTGGAGACCTTGTAGTGAAAAACCAG                         AAGTTCATTGAGGCAACACGCGAAACAAGCGTTACCTTTATCATCGGAAAG
genomic: TCTTCAGTAAGGATAATGTGTTGGTTGGAGACCTTGTAGTGAAAAACCAGgtaattgaat ... gctatttcagAAGTTCATTGAGGCAACACGCGAAACAAGCGTTACCTTTATCATCGGAAAG
EST: gi|58689258|gb|CK077945.1|CK077945
EST:     TCTTCAGTAAGGATAATGTGTTGGTTGGAGACCTTGTAGTGAAAAACCAG                         AAGTTCATTGAGGCAACACGCGAAACAAGCG
genomic: TCTTCAGTAAGGATAATGTGTTGGTTGGAGACCTTGTAGTGAAAAACCAGgtaattgaat ... gctatttcagAAGTTCATTGAGGCAACACGCGAAACAAGCG
EST: gi|29615278|gb|CB620290.1|CB620290
EST:     TCTTCAGTAAGGATAATGTGTTGGTTGGAGACCTTGTAGTGAAAAACCAG                         AAGTTCATTGAGGCAACACGCGAAACAAGCGTTACCTTTATCATCGGAAAG
genomic: TCTTCAGTAAGGATAATGTGTTGGTTGGAGACCTTGTAGTGAAAAACCAGgtaattgaat ... gctatttcagAAGTTCATTGAGGCAACACGCGAAACAAGCGTTACCTTTATCATCGGAAAG
EST: gi|84117024|gb|CD150791.1|CD150791
EST:     TCTTCAGTAAGGATAATGTGTTGGTTGGAGACCTTGTAGTGAAAAACCAG                         AAGTTCATTGAGGCAACACGCGAAACAAGCGTTACCTTTATCATCGGAAAG
genomic: TCTTCAGTAAGGATAATGTGTTGGTTGGAGACCTTGTAGTGAAAAACCAGgtaattgaat ... gctatttcagAAGTTCATTGAGGCAACACGCGAAACAAGCGTTACCTTTATCATCGGAAAG
EST: gi|29667624|gb|CB663899.1|CB663899
EST:     TCTTCAGTAAGGATAATGTGTTGGTTGGAGACCTTGTAGTGAAAAACCAG                         AAGTTCATTGAGGCAACACGCGAAACAAGCGTTACCTTTATCATCGGAAAG
genomic: TCTTCAGTAAGGATAATGTGTTGGTTGGAGACCTTGTAGTGAAAAACCAGgtaattgaat ... gctatttcagAAGTTCATTGAGGCAACACGCGAAACAAGCGTTACCTTTATCATCGGAAAG
EST: gi|29632395|gb|CB637404.1|CB637404
EST:     TCTTCAGTAAGGATAATGTGTTGGTTGGAGACCTTGTAGTGAAAAACCAG                         AAGTTCATTGAGGCAACACGCGAAACAAGCGTTACCTTTATCATCGGAAAG
genomic: TCTTCAGTAAGGATAATGTGTTGGTTGGAGACCTTGTAGTGAAAAACCAGgtaattgaat ... gctatttcagAAGTTCATTGAGGCAACACGCGAAACAAGCGTTACCTTTATCATCGGAAAG
EST: gi|58687763|gb|CK076450.1|CK076450
EST:     TCTTCAGTAAGGATAATGTGTTGGTTGGAGACCTTGTAGTGAAAAACCAG                         AAGTTCATTGAGGCAACACGCGAAACAAGCGTTACCTTTATCATCGGAAAG
genomic: TCTTCAGTAAGGATAATGTGTTGGTTGGAGACCTTGTAGTGAAAAACCAGgtaattgaat ... gctatttcagAAGTTCATTGAGGCAACACGCGAAACAAGCGTTACCTTTATCATCGGAAAG
EST: gi|29645305|gb|CB650312.1|CB650312
EST:     TCTTCAGTAAGGATAATGTGTTGGTTGGAGACCTTGTAGTGAAAAACCAG                         AAGTTCATTGAGGCAACACGCGAAACAAGCGTTACCTTTATCATCGGAAAG
genomic: TCTTCAGTAAGGATAATGTGTTGGTTGGAGACCTTGTAGTGAAAAACCAGgtaattgaat ... gctatttcagAAGTTCATTGAGGCAACACGCGAAACAAGCGTTACCTTTATCATCGGAAAG
EST: gi|29616093|gb|CB621105.1|CB621105
EST:     TCTTCAGTAAGGATAATGTGTTGGTTGGAGACCTTGTAGTGAAAAACCAG                         AAGTTCATTGAGGCAACACGCGAAACAAGCGTTACCTTTATCATCGGAAAG
genomic: TCTTCAGTAAGGATAATGTGTTGGTTGGAGACCTTGTAGTGAAAAACCAGgtaattgaat ... gctatttcagAAGTTCATTGAGGCAACACGCGAAACAAGCGTTACCTTTATCATCGGAAAG
EST: gi|29638609|gb|CB643618.1|CB643618
EST:     TCTTCAGTAAGGATAATGTGTTGGTTGGAGACCTTGTAGTGAAAAACCAG                         AAGTTCATTGAGGCAACACGCGAAACAAGCGTTACCTTTATCATCGGAAAG
genomic: TCTTCAGTAAGGATAATGTGTTGGTTGGAGACCTTGTAGTGAAAAACCAGgtaattgaat ... gctatttcagAAGTTCATTGAGGCAACACGCGAAACAAGCGTTACCTTTATCATCGGAAAG
EST: gi|58692931|gb|CK081618.1|CK081618
EST:     TCTTCAGTAAGGATAATGTGTTGGTTGGAGACCTTGTAGTGAAAAACCAG                         AAGTTCATTGAGGCAACACGCGAAACAAGCGTTACCTTTATCATCGGAAAG
genomic: TCTTCAGTAAGGATAATGTGTTGGTTGGAGACCTTGTAGTGAAAAACCAGgtaattgaat ... gctatttcagAAGTTCATTGAGGCAACACGCGAAACAAGCGTTACCTTTATCATCGGAAAG
EST: gi|2312447|gb|C28602.1|C28602
EST:     CTTCAGTAAGGATAATTGTGTTGGTTGGAGGCCTTGTAGTGAAAAACCAG                         AAGTTCATTTNGGGCAACACGCGGAACAAGCGTTACCTTTATCATCGGNAA
genomic: CTTCAGTAAGGATAAT-GTGTTGGTTGGAGACCTTGTAGTGAAAAACCAGgtaattgaat ... gctatttcagAAGTTCATTGAGG-CAACACGCGAAACAAGCGTTACCTTTATCATCGGAAA
EST: gi|29642216|gb|CB647223.1|CB647223
EST:     TCTTCAGTAAGGATAATGTGTTGGTTGGAGACCTTGTAGTGAAAAACCAG                         AAGTTCATTGAGGCAACACGCGAAACAAGCGTTACCTTTATCATCGGAAAG
genomic: TCTTCAGTAAGGATAATGTGTTGGTTGGAGACCTTGTAGTGAAAAACCAGgtaattgaat ... gctatttcagAAGTTCATTGAGGCAACACGCGAAACAAGCGTTACCTTTATCATCGGAAAG
EST: gi|27577332|gb|CB000027.1|CB000027
EST:     TCTTCAGTAAGGATAATGTGTTGGTTGGAGACCTTGTAGTGAAAAACCAG                         AAGTTCATTGAGGCAACACGCGAAACAAGCGTTACCTTTTTTATCGGAAAG
genomic: TCTTCAGTAAGGATAATGTGTTGGTTGGAGACCTTGTAGTGAAAAACCAGgtaattgaat ... gctatttcagAAGTTCATTGAGGCAACACGCGAAACAAGCGTTACCTTTATCATCGGAAAG
EST: gi|58591597|gb|CF989905.1|CF989905
EST:     TCTTCAGTAAGGATAATGTGTCGGTTGGAGACCTTGTAGTGAAAAACCAG                         AAGTTCATTGAGGCAACACGCGAAACAAGCGTTACCTTTATCATCGGAAAG
genomic: TCTTCAGTAAGGATAATGTGTTGGTTGGAGACCTTGTAGTGAAAAACCAGgtaattgaat ... gctatttcagAAGTTCATTGAGGCAACACGCGAAACAAGCGTTACCTTTATCATCGGAAAG
EST: gi|33666702|gb|CF297669.1|CF297669
EST:     CTTCAGTAAGGATTAATGTGTTGGTTGGAGACCTTGTAGTGAAAAACCAG                         AAGTTCATTGAGGCAACACGTGAAACAAGCGTTACCTTTATCATCGGAAAG
genomic: CTTCAGTAAGGAT-AATGTGTTGGTTGGAGACCTTGTAGTGAAAAACCAGgtaattgaat ... gctatttcagAAGTTCATTGAGGCAACACGCGAAACAAGCGTTACCTTTATCATCGGAAAG
EST: gi|58691118|gb|CK079805.1|CK079805
EST:     TCTTCAGTAAGGATAATGTGTTGGTTGGAGACCTTGTAGTGAAAAACCAG                         AAAGTTCATTGAGGCAACACGCGA
genomic: TCTTCAGTAAGGATAATGTGTTGGTTGGAGACCTTGTAGTGAAAAACCAGgtaattgaat ... gctatttcagAA-GTTCATTGAGGCAACACGCGA
EST: gi|29675833|gb|CB672108.1|CB672108
EST:     TCTTCAGTAAGGATAATGTGTTGGTTGGAGACCTTGTAGTGAAAAACCAG                         AAGTTCATTGAGGCAACACGCGAAACAAGCGTTACCTTTATCATCGGAAAG
genomic: TCTTCAGTAAGGATAATGTGTTGGTTGGAGACCTTGTAGTGAAAAACCAGgtaattgaat ... gctatttcagAAGTTCATTGAGGCAACACGCGAAACAAGCGTTACCTTTATCATCGGAAAG
EST: gi|29643726|gb|CB648733.1|CB648733
EST:     TCTTCAGTAAGGATAATGTGTTGGTTGGAGACCTTGTAGTGAAAAACCAG                         AAGTTCATTGAGGCAACACGCGAAACAAGCGTTACCTTTATCATCGGAAAG
genomic: TCTTCAGTAAGGATAATGTGTTGGTTGGAGACCTTGTAGTGAAAAACCAGgtaattgaat ... gctatttcagAAGTTCATTGAGGCAACACGCGAAACAAGCGTTACCTTTATCATCGGAAAG
EST: gi|29616174|gb|CB621186.1|CB621186
EST:     TCTTCAGTAAGGATAATGTGTTGGTTGGAGACCTTGTAGTGAAAAACCAG                         AAGTTCATTGAGGCAACACGCGAAACAAGCGTTACCTTTATCATCGGAAAG
genomic: TCTTCAGTAAGGATAATGTGTTGGTTGGAGACCTTGTAGTGAAAAACCAGgtaattgaat ... gctatttcagAAGTTCATTGAGGCAACACGCGAAACAAGCGTTACCTTTATCATCGGAAAG
EST: gi|218488300|gb|FG946413.1|FG946413
EST:     TCTTCANTAAGGATAATGTGTTGGTTGGAGACCTTGTAGTGAAAAACCAG                         AAGTTCATTGAGGCAACACGCGAAACAAGCGTTACCTTTATCATCGGAAAG
genomic: TCTTCAGTAAGGATAATGTGTTGGTTGGAGACCTTGTAGTGAAAAACCAGgtaattgaat ... gctatttcagAAGTTCATTGAGGCAACACGCGAAACAAGCGTTACCTTTATCATCGGAAAG
EST: gi|86596757|gb|CI286670.1|CI286670
EST:     TCTTCAGTAAGGATAATGTGTTGGTTGGAGACCTTGTAGTGAAAAACCAG                         AAGTTCATTGAGGCAACACGCGAAACAAGCGTTACCTTTATCATCGGAAAG
genomic: TCTTCAGTAAGGATAATGTGTTGGTTGGAGACCTTGTAGTGAAAAACCAGgtaattgaat ... gctatttcagAAGTTCATTGAGGCAACACGCGAAACAAGCGTTACCTTTATCATCGGAAAG
EST: gi|58693676|gb|CK082363.1|CK082363
EST:     TCTTCAGTAAGGATAATGTGTTGGTTGGAGACCTTGTAGTGAAAAACCAG                         AAGTTCATTGAGGCAACACGCGAAACAAGCGTTACCTTTATCATCGGAAAG
genomic: TCTTCAGTAAGGATAATGTGTTGGTTGGAGACCTTGTAGTGAAAAACCAGgtaattgaat ... gctatttcagAAGTTCATTGAGGCAACACGCGAAACAAGCGTTACCTTTATCATCGGAAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatgtatcatattcctaatgctgcagttcttttccctcccatctggctatttcagAAGTTCATTGAGGCAACACGCGAAACAAGCGTTACCTTTATCATCGGAAAGTTTGATGGAATTCTTGGTCTTGGCTACCCTGAAATCTCTGTTGGGAAAG
            tcctaat  putative branch site (score: 2)
                          ttcttttccctcccat  putative PPT
     atcatatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaattgaatgagagtaatagagtagtaattcttctttttagcatttatgtatcatattcctaatgctgcagttcttttccctcccatctggctatttcagAAGTTCATTGAGGCAACACGCGAAACAAGCGTTACCTTTATCATCGGAAAGTTTGATGGAATTCTTGGTCTTGGCTACCCTGAAATCTCTGTTGGGAAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GATGGA