1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
gtaatgtgcagtgcatccctgtattaacttcttgctttatttgattttcacttatgatttgcgcattgccatgccatatatatcttcagtccgaaagtttttttgccagcagttgatccaatccgaaacgtctgttcttgtagGTCAAAGCAGTTGGAGAGGAAATGGGGATTGGATTTCTCGGAATTGGTTTTCAGCCAAAGTGGGCACTGAGTGACATACCAATAATGCCCAAG
species | Oryza sativa |
transcript | LOC_Os05g03820.3 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TTGAAACATTACATCAAACTTGTGCTGAGGTCAATTCACATCTTTACCAG GTCAAAGCAGTTGGAGAGGAAATGGGGATTGGATTTCTCGGAATTGGTTTTEST: gi|33796283|gb|CF324008.1|CF324008
genomic: TTGAAACATTACATCAAACTTGTGCTGAGGTCAATTCACATCTTTACCAGgtaatgtgca ... gttcttgtagGTCAAAGCAGTTGGAGAGGAAATGGGGATTGGATTTCTCGGAATTGGTTTT
EST: TTGAAACATTACATCAAACTTGTGCTGAGGTCAATTCACATCTTTACCAG GTCAAAGCAGTTGGAGAGGAAATGGGGATTGGATTTCTCGGAATTGGTTTTEST: gi|88347509|gb|CI637449.1|CI637449
genomic: TTGAAACATTACATCAAACTTGTGCTGAGGTCAATTCACATCTTTACCAGgtaatgtgca ... gttcttgtagGTCAAAGCAGTTGGAGAGGAAATGGGGATTGGATTTCTCGGAATTGGTTTT
EST: TTGAAACATTACATCAAACTTGTGCTGAGGTCAATTCACATCTTTACCAG GTCAAAGCAGTTGGEST: gi|88573359|gb|CI664930.1|CI664930
genomic: TTGAAACATTACATCAAACTTGTGCTGAGGTCAATTCACATCTTTACCAGgtaatgtgca ... gttcttgtagGTCAAAGCAGTTGG
EST: TTGAAACATTACATCAAACTTGTGCTGAGGTCAATTCACATCTTTACCAG GTCAAAGCAGTTGGAGAGGAAATGGGGATTGEST: gi|58658531|gb|CK047211.1|CK047211
genomic: TTGAAACATTACATCAAACTTGTGCTGAGGTCAATTCACATCTTTACCAGgtaatgtgca ... gttcttgtagGTCAAAGCAGTTGGAGAGGAAATGGGGATTG
EST: TTGAAACATTACATCAAACTTGTGCTGAGGTCAATTCACATCTTTACCAG GTCAAAGCAGTTGGAGAGGAAATGGGGATTGGATTTCTCGGAATTGGTTTTEST: gi|29679436|gb|CB675711.1|CB675711
genomic: TTGAAACATTACATCAAACTTGTGCTGAGGTCAATTCACATCTTTACCAGgtaatgtgca ... gttcttgtagGTCAAAGCAGTTGGAGAGGAAATGGGGATTGGATTTCTCGGAATTGGTTTT
EST: TTGAAACATTACATCAAACTTGTGCTGAGGTCAATTCACATCTTTACCAG GTCAAAGCAGTTGGAGAGGAAATGGGGATTGGATTTCTCGGAATTGGTTTTEST: gi|88336064|gb|CI647258.1|CI647258
genomic: TTGAAACATTACATCAAACTTGTGCTGAGGTCAATTCACATCTTTACCAGgtaatgtgca ... gttcttgtagGTCAAAGCAGTTGGAGAGGAAATGGGGATTGGATTTCTCGGAATTGGTTTT
EST: TTGAAACATTACATCAAACTTGTGCTGAGGTCAATTCACATCTTTACCAG GTCAAAGCAGTTGGAGAGGAAEST: gi|29677970|gb|CB674245.1|CB674245
genomic: TTGAAACATTACATCAAACTTGTGCTGAGGTCAATTCACATCTTTACCAGgtaatgtgca ... gttcttgtagGTCAAAGCAGTTGGAGAGGAA
EST: TTGAAACATTACATCAAACTTGTGCTGAGGTCAATTCACATCTTTACCAG GTCAAAGCAGTTGGAGAGGAAATGGGGATTGGATTTCTCGGAATTGGTTTT
genomic: TTGAAACATTACATCAAACTTGTGCTGAGGTCAATTCACATCTTTACCAGgtaatgtgca ... gttcttgtagGTCAAAGCAGTTGGAGAGGAAATGGGGATTGGATTTCTCGGAATTGGTTTT
gtccgaaagtttttttgccagcagttgatccaatccgaaacgtctgttcttgtagGTCAAAGCAGTTGGAGAGGAAATGGGGATTGGATTTCTCGGAATTGGTTTTCAGCCAAAGTGGGCACTGAGTGACATACCAATAATGCCCAAG
agttgat putative branch site (score: 192)
tctgttctt putative PPT
aaagttttttt TA-rich tract