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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcttccccaaatcatcaacttgtactgcttcagtcagactccagtgttaaacaatttactcatttagtgttctcagtgactgataatggatcctgttaatgtgttttaccttttctctaaagctaatcagTGGGGAGCATGTGGGGGCATTGGCGATGAGCGAACCCAACT

Basic information

species Oryza sativa
transcript LOC_Os05g03480.4
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os05g03480.4 (Oryza sativa), 3'ss of exon 4
lower sequence: GRMZM2G052630_T02 (Zea mays), 3'ss of exon 3
----------------gtgcttccccaaatc-atcaacttgtactgcttcagtcagactccagtgttaaacaatttactcatttagtgttctca-gtgactgataatggatcctgttaatgtgtttt-accttttctctaaagctaatcagTGGGGAGCATGTGGGGGCATTGGCGATGAGCGAACCCAACT
                |   || |     || ||||   |||   ||    | || | |    |    ||| ||  |     | | || |   |  || |||    |   |  |  | |||  ||||  |||| ||| | ||||| ||||||||||||||| | |||||| |||| ||||| ||||||||||
gtgctgtgctctcctcggatttgctttgttctatcattatgtttcgccagggccatagttttcttaagaacgatgaagatgctcactgctagtatatgtctggcggt--tttatactcatgcatttttgccttctctatgaagctcatcagTGGGGAGCATATCGGGGCACTGGCAATGAGTGAACCCAACT

upper sequence: LOC_Os05g03480.4 (Oryza sativa), 3'ss of exon 4
lower sequence: GRMZM2G381051_T01 (Zea mays), 3'ss of exon 3
----------------gtgcttccccaaatcatca--acttgtactgcttcagtcagactccagtgtt--------aaacaatttactcatttagtgttctcagtgactg-----ataatggatcctgttaatgtgtttt--------accttttctctaaagctaatcagTGGGGAGCATGTGGGGGCATTGGCGATGAGCGAACCCAACT
                |   | |  || |||| ||  |  | |  || ||||    |||   ||| ||        |||  ||  ||     |||  ||   | ||  |      || | || |  | || | | |||||         |||| ||||  ||||| ||||||||||||||| | |||||| |||||||||| ||||||||||
gtgctgtgcttttccggatttgcttcacatcaccatgatgtttgatgtttcacaaggaccgtagttttctcaaggaaaaagatgcacatcgctaggatttcgaatgttttctgtcatgacgggttatattcacgcgtttttcatttttgccttctctccgaagCTGATCAGTGGGGAGCATATCGGGGCACTGGCGATGAGTGAACCCAACT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29665694|gb|CB661969.1|CB661969
EST:     GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG                         C
genomic: GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAGgtgcttcccc ... agctaatcag-
EST: gi|29665694|gb|CB661969.1|CB661969
EST:     GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG                         C
genomic: GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAGgtgcttcccc ... agctaatcag-
EST: gi|58675201|gb|CK063888.1|CK063888
EST:     GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG                         C
genomic: GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAGgtgcttcccc ... agctaatcag-
EST: gi|58675201|gb|CK063888.1|CK063888
EST:     GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG                         C
genomic: GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAGgtgcttcccc ... agctaatcag-
EST: gi|29661037|gb|CB657312.1|CB657312
EST:     GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG                         C
genomic: GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAGgtgcttcccc ... agctaatcag-
EST: gi|29661037|gb|CB657312.1|CB657312
EST:     GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG                         C
genomic: GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAGgtgcttcccc ... agctaatcag-
EST: gi|29678947|gb|CB675222.1|CB675222
EST:     GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG                         C
genomic: GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAGgtgcttcccc ... agctaatcag-
EST: gi|29678947|gb|CB675222.1|CB675222
EST:     GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG                         C
genomic: GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAGgtgcttcccc ... agctaatcag-
EST: gi|29637530|gb|CB642539.1|CB642539
EST:     GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG                         C
genomic: GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAGgtgcttcccc ... agctaatcag-
EST: gi|29637530|gb|CB642539.1|CB642539
EST:     GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG                         C
genomic: GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAGgtgcttcccc ... agctaatcag-
EST: gi|29661524|gb|CB657799.1|CB657799
EST:     GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG                         C
genomic: GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAGgtgcttcccc ... agctaatcag-
EST: gi|29661524|gb|CB657799.1|CB657799
EST:     GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG                         C
genomic: GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAGgtgcttcccc ... agctaatcag-
EST: gi|29668355|gb|CB664630.1|CB664630
EST:     GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG                         TGGGGAGCATGTGGGGGCATTGGCGATGAGCGAACCCAACT
genomic: GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAGgtgcttcccc ... agctaatcagTGGGGAGCATGTGGGGGCATTGGCGATGAGCGAACCCAACT
EST: gi|29642007|gb|CB647014.1|CB647014
EST:     GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG                         C
genomic: GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAGgtgcttcccc ... agctaatcag-
EST: gi|29642007|gb|CB647014.1|CB647014
EST:     GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG                         C
genomic: GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAGgtgcttcccc ... agctaatcag-
EST: gi|58588211|gb|CF986519.1|CF986519
EST:     GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAGCTAATCAG                  
genomic: GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTA-C----C-AA--AGgtgcttcccc ... agc
EST: gi|29664861|gb|CB661136.1|CB661136
EST:     GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG                         TGGGGAGCATGTGGGGGCATTGGCGATGAGCGAACCCAACT
genomic: GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAGgtgcttcccc ... agctaatcagTGGGGAGCATGTGGGGGCATTGGCGATGAGCGAACCCAACT
EST: gi|29661039|gb|CB657314.1|CB657314
EST:     GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG                         C
genomic: GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAGgtgcttcccc ... agctaatcag-
EST: gi|29661039|gb|CB657314.1|CB657314
EST:     GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG                         C
genomic: GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAGgtgcttcccc ... agctaatcag-
EST: gi|29669233|gb|CB665508.1|CB665508
EST:     GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG                         C
genomic: GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAGgtgcttcccc ... agctaatcag-
EST: gi|29669233|gb|CB665508.1|CB665508
EST:     GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG                         C
genomic: GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAGgtgcttcccc ... agctaatcag-
EST: gi|29662792|gb|CB659067.1|CB659067
EST:     GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG                         TGGGGAGCATGTGGGGGCATTGGCGATGAGCGAACCCAACT
genomic: GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAGgtgcttcccc ... agctaatcagTGGGGAGCATGTGGGGGCATTGGCGATGAGCGAACCCAACT
EST: gi|29663795|gb|CB660070.1|CB660070
EST:     GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG                         C
genomic: GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAGgtgcttcccc ... agctaatcag-
EST: gi|29663795|gb|CB660070.1|CB660070
EST:     GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG                         C
genomic: GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAGgtgcttcccc ... agctaatcag-
EST: gi|29637231|gb|CB642240.1|CB642240
EST:     GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG                         C
genomic: GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAGgtgcttcccc ... agctaatcag-
EST: gi|29637231|gb|CB642240.1|CB642240
EST:     GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG                         C
genomic: GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAGgtgcttcccc ... agctaatcag-
EST: gi|29642660|gb|CB647667.1|CB647667
EST:     GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG                         TGGGGAGCATGTGGGGGCATTGGCGATGAGCGAACCCAACT
genomic: GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAGgtgcttcccc ... agctaatcagTGGGGAGCATGTGGGGGCATTGGCGATGAGCGAACCCAACT
EST: gi|29663209|gb|CB659484.1|CB659484
EST:     GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAGCTAATCAG                  
genomic: GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTA-C----C-AA--AGgtgcttcccc ... agc
EST: gi|29642658|gb|CB647665.1|CB647665
EST:     GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG                         TGGGGAGCATGTGGGGGCATTGGCGATGAGCGAACCCAACT
genomic: GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAGgtgcttcccc ... agctaatcagTGGGGAGCATGTGGGGGCATTGGCGATGAGCGAACCCAACT
EST: gi|29671620|gb|CB667895.1|CB667895
EST:     GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG                         C
genomic: GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAGgtgcttcccc ... agctaatcag-
EST: gi|29671620|gb|CB667895.1|CB667895
EST:     GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG                         C
genomic: GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAGgtgcttcccc ... agctaatcag-
EST: gi|29670746|gb|CB667021.1|CB667021
EST:     GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG                         C
genomic: GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAGgtgcttcccc ... agctaatcag-
EST: gi|29670746|gb|CB667021.1|CB667021
EST:     GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG                         C
genomic: GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAGgtgcttcccc ... agctaatcag-
EST: gi|29664640|gb|CB660915.1|CB660915
EST:     GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG                         C
genomic: GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAGgtgcttcccc ... agctaatcag-
EST: gi|29664640|gb|CB660915.1|CB660915
EST:     GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG                         C
genomic: GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAGgtgcttcccc ... agctaatcag-
EST: gi|58595349|gb|CF993657.1|CF993657
EST:     GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAGCTAATCAG                  
genomic: GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTA-C----C-AA--AGgtgcttcccc ... agc
EST: gi|58655315|gb|CK043995.1|CK043995
EST:     GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG                         C
genomic: GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAGgtgcttcccc ... agctaatcag-
EST: gi|58655315|gb|CK043995.1|CK043995
EST:     GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG                         C
genomic: GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAGgtgcttcccc ... agctaatcag-
EST: gi|29659705|gb|CB655980.1|CB655980
EST:     GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG                         TGGGGAGCATGTGGGGGCATTGGCGATGAGCGAACCCAACT
genomic: GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAGgtgcttcccc ... agctaatcagTGGGGAGCATGTGGGGGCATTGGCGATGAGCGAACCCAACT
EST: gi|29681462|gb|CB677737.1|CB677737
EST:     GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG                         C
genomic: GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAGgtgcttcccc ... agctaatcag-
EST: gi|29681462|gb|CB677737.1|CB677737
EST:     GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG                         C
genomic: GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAGgtgcttcccc ... agctaatcag-
EST: gi|58666277|gb|CK054963.1|CK054963
EST:     GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG                         C
genomic: GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAGgtgcttcccc ... agctaatcag-
EST: gi|58666277|gb|CK054963.1|CK054963
EST:     GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG                         C
genomic: GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAGgtgcttcccc ... agctaatcag-
EST: gi|29674356|gb|CB670631.1|CB670631
EST:     GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAGCTAATCAG                  
genomic: GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTA-C----C-AA--AGgtgcttcccc ... agc
EST: gi|29682069|gb|CB678344.1|CB678344
EST:     GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG                         C
genomic: GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAGgtgcttcccc ... agctaatcag-
EST: gi|29682069|gb|CB678344.1|CB678344
EST:     GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG                         C
genomic: GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAGgtgcttcccc ... agctaatcag-
EST: gi|29666865|gb|CB663140.1|CB663140
EST:     GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG                         C
genomic: GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAGgtgcttcccc ... agctaatcag-
EST: gi|29666865|gb|CB663140.1|CB663140
EST:     GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG                         C
genomic: GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAGgtgcttcccc ... agctaatcag-
EST: gi|29623029|gb|CB628040.1|CB628040
EST:     GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG                         C
genomic: GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAGgtgcttcccc ... agctaatcag-
EST: gi|29623029|gb|CB628040.1|CB628040
EST:     GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG                         C
genomic: GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAGgtgcttcccc ... agctaatcag-
EST: gi|29680931|gb|CB677206.1|CB677206
EST:     GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG                         C
genomic: GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAGgtgcttcccc ... agctaatcag-
EST: gi|29680931|gb|CB677206.1|CB677206
EST:     GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG                         C
genomic: GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAGgtgcttcccc ... agctaatcag-
EST: gi|29657680|gb|CB653955.1|CB653955
EST:     GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG                         C
genomic: GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAGgtgcttcccc ... agctaatcag-
EST: gi|29657680|gb|CB653955.1|CB653955
EST:     GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG                         C
genomic: GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAGgtgcttcccc ... agctaatcag-
EST: gi|29664203|gb|CB660478.1|CB660478
EST:     GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG                         C
genomic: GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAGgtgcttcccc ... agctaatcag-
EST: gi|29664203|gb|CB660478.1|CB660478
EST:     GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG                         C
genomic: GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAGgtgcttcccc ... agctaatcag-
EST: gi|29674433|gb|CB670708.1|CB670708
EST:     GTCCGGCATGGCAGCCCTGCCCAAAAGCTCCAGTACTTACCAGAG                         TGGGGAGCATGTGGGGGCATTGGCGATGAGCGAACCCAACT
genomic: GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAGgtgcttcccc ... agctaatcagTGGGGAGCATGTGGGGGCATTGGCGATGAGCGAACCCAACT
EST: gi|29661262|gb|CB657537.1|CB657537
EST:     GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG                         C
genomic: GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAGgtgcttcccc ... agctaatcag-
EST: gi|29661262|gb|CB657537.1|CB657537
EST:     GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG                         C
genomic: GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAGgtgcttcccc ... agctaatcag-
EST: gi|29614820|gb|CB619833.1|CB619833
EST:     GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG                         C
genomic: GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAGgtgcttcccc ... agctaatcag-
EST: gi|29614820|gb|CB619833.1|CB619833
EST:     GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG                         C
genomic: GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAGgtgcttcccc ... agctaatcag-
EST: gi|29643545|gb|CB648552.1|CB648552
EST:     GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG                         C
genomic: GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAGgtgcttcccc ... agctaatcag-
EST: gi|29643545|gb|CB648552.1|CB648552
EST:     GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG                         C
genomic: GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAGgtgcttcccc ... agctaatcag-
EST: gi|58689911|gb|CK078598.1|CK078598
EST:     GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG                         C
genomic: GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAGgtgcttcccc ... agctaatcag-
EST: gi|58689911|gb|CK078598.1|CK078598
EST:     GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG                         C
genomic: GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAGgtgcttcccc ... agctaatcag-
EST: gi|29658881|gb|CB655156.1|CB655156
EST:     GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG                         C
genomic: GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAGgtgcttcccc ... agctaatcag-
EST: gi|29658881|gb|CB655156.1|CB655156
EST:     GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG                         C
genomic: GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAGgtgcttcccc ... agctaatcag-
EST: gi|29657355|gb|CB653630.1|CB653630
EST:     GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG                         C
genomic: GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAGgtgcttcccc ... agctaatcag-
EST: gi|29657355|gb|CB653630.1|CB653630
EST:     GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG                         C
genomic: GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAGgtgcttcccc ... agctaatcag-
EST: gi|33683556|gb|CF311795.1|CF311795
EST:     CGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAGCTAATCAG                  
genomic: CGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTA-C----C-AA--AGgtgcttcccc ... agc
EST: gi|29675356|gb|CB671631.1|CB671631
EST:     GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG                         C
genomic: GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAGgtgcttcccc ... agctaatcag-
EST: gi|29675356|gb|CB671631.1|CB671631
EST:     GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG                         C
genomic: GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAGgtgcttcccc ... agctaatcag-
EST: gi|29672429|gb|CB668704.1|CB668704
EST:     GTCCGGCATGGCAGCCCTGCCCAAAAGCTCGAGTACTTACCAAAG                         C
genomic: GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAGgtgcttcccc ... agctaatcag-
EST: gi|29672429|gb|CB668704.1|CB668704
EST:     GTCCGGCATGGCAGCCCTGCCCAAAAGCTCGAGTACTTACCAAAG                         C
genomic: GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAGgtgcttcccc ... agctaatcag-
EST: gi|29664256|gb|CB660531.1|CB660531
EST:     GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG                         C
genomic: GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAGgtgcttcccc ... agctaatcag-
EST: gi|29664256|gb|CB660531.1|CB660531
EST:     GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG                         C
genomic: GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAGgtgcttcccc ... agctaatcag-
EST: gi|29661229|gb|CB657504.1|CB657504
EST:     GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG                         C
genomic: GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAGgtgcttcccc ... agctaatcag-
EST: gi|29661229|gb|CB657504.1|CB657504
EST:     GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG                         C
genomic: GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAGgtgcttcccc ... agctaatcag-
EST: gi|29641738|gb|CB646745.1|CB646745
EST:     GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG                         C
genomic: GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAGgtgcttcccc ... agctaatcag-
EST: gi|29641738|gb|CB646745.1|CB646745
EST:     GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG                         C
genomic: GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAGgtgcttcccc ... agctaatcag-
EST: gi|29658317|gb|CB654592.1|CB654592
EST:     GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG                         C
genomic: GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAGgtgcttcccc ... agctaatcag-
EST: gi|29658317|gb|CB654592.1|CB654592
EST:     GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG                         C
genomic: GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAGgtgcttcccc ... agctaatcag-
EST: gi|29668395|gb|CB664670.1|CB664670
EST:     GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG                         TGGGGAGCATGTGGGGGCATTGGCGATGAGCGAACCCAACT
genomic: GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAGgtgcttcccc ... agctaatcagTGGGGAGCATGTGGGGGCATTGGCGATGAGCGAACCCAACT
EST: gi|25800055|gb|CA756016.1|CA756016
EST:     CGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCANAGCTNATCAG                         TGGGGAGCATGTGGGGGCATTGGCGA
genomic: CGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCA-A----A---Ggtgcttcccc ... agctaatcagTGGGGAGCATGTGGGGGCATTGGCGA
EST: gi|29680249|gb|CB676524.1|CB676524
EST:     GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG                         C
genomic: GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAGgtgcttcccc ... agctaatcag-
EST: gi|29680249|gb|CB676524.1|CB676524
EST:     GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG                         C
genomic: GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAGgtgcttcccc ... agctaatcag-
EST: gi|29637190|gb|CB642199.1|CB642199
EST:     GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG                         C
genomic: GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAGgtgcttcccc ... agctaatcag-
EST: gi|29637190|gb|CB642199.1|CB642199
EST:     GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG                         C
genomic: GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAGgtgcttcccc ... agctaatcag-
EST: gi|33654177|gb|CF276791.1|CF276791
EST:     GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG                         C
genomic: GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAGgtgcttcccc ... agctaatcag-
EST: gi|33654177|gb|CF276791.1|CF276791
EST:     GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG                         C
genomic: GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAGgtgcttcccc ... agctaatcag-
EST: gi|29680494|gb|CB676769.1|CB676769
EST:     GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG                         C
genomic: GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAGgtgcttcccc ... agctaatcag-
EST: gi|29680494|gb|CB676769.1|CB676769
EST:     GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG                         C
genomic: GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAGgtgcttcccc ... agctaatcag-
EST: gi|29641375|gb|CB646382.1|CB646382
EST:     GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG                         TGGGGAGCATGTGGGGGCATTGGCGATGAGCGAACCCAACT
genomic: GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAGgtgcttcccc ... agctaatcagTGGGGAGCATGTGGGGGCATTGGCGATGAGCGAACCCAACT
EST: gi|29661171|gb|CB657446.1|CB657446
EST:     GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG                         C
genomic: GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAGgtgcttcccc ... agctaatcag-
EST: gi|29661171|gb|CB657446.1|CB657446
EST:     GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG                         C
genomic: GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAGgtgcttcccc ... agctaatcag-

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 41 (upstream exon), 70 (downstream exon)
Score: 70

GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAGgtgcttcccc ... agctaatcagTGGGGAGCATGTGGGGGCATTGGCGATGAGCGAACCCAACT




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgactgataatggatcctgttaatgtgttttaccttttctctaaagctaatcagTGGGGAGCATGTGGGGGCATTGGCGATGAGCGAACCCAACT
                                       ctctaaa  putative branch site (score: 70)
     tgataat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgcttccccaaatcatcaacttgtactgcttcagtcagactccagtgttaaacaatttactcatttagtgttctcagtgactgataatggatcctgttaatgtgttttaccttttctctaaagctaatcagTGGGGAGCATGTGGGGGCATTGGCGATGAGCGAACCCAACT

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