1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaaaacaaggcgattcaattgattcatcattttttttagtgaaaccatatttttccagtgactctaaaatgttttgtacatcatttggttgtatgcacatgtaaagGTGGACCGTGTGCTCTATTCATCAGTTGTGTACCCTCACAACTATGGATTCATTCCTCGCACGCTGTGTGAAGACAGTGATCCGTTGGATGTGCTGGTTA
species | Oryza sativa |
transcript | LOC_Os05g02310.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GGGGCAGCAAGGTTAAATATGAACTTGACAAGAAAACTGGACTGATAGTG GTGGACCGTGTGCTCTATTCATCAGTTGTGTACCCTCACAACTATGGATTCEST: gi|88720264|gb|CI743563.1|CI743563
genomic: GGGGCAGCAAGGTTAAATATGAACTTGACAAGAAAACTGGACTGATAGTGgtaaaacaag ... acatgtaaagGTGGACCGTGTGCTCTATTCATCAGTTGTGTACCCTCACAACTATGGATTC
EST: GGGGCAGCAAGGTTAAATATGAACTTGACAAGAAAACTGGACTGATAGTG GTGGACCGTGTGCTCTATTCATCAGTTGTGTACCEST: gi|4878573|gb|AU062872.1|AU062872
genomic: GGGGCAGCAAGGTTAAATATGAACTTGACAAGAAAACTGGACTGATAGTGgtaaaacaag ... acatgtaaagGTGGACCGTGTGCTCTATTCATCAGTTGTGTACC
EST: GGGGCAGCAAGGTTAAATATGAACTTGACAAGAAAACTGGACTGATAGTG GTGGACCGTGTGCTCTATTCATCAGTTGTGTACCCTCACAACTATGGGANTEST: gi|88396360|gb|CI598472.1|CI598472
genomic: GGGGCAGCAAGGTTAAATATGAACTTGACAAGAAAACTGGACTGATAGTGgtaaaacaag ... acatgtaaagGTGGACCGTGTGCTCTATTCATCAGTTGTGTACCCTCACAACTATGG-ATT
EST: GGGGCAGCAAGGTTAAATATGAACTTGACAAGAAAACTGGACTGATAGTG GTGGACCGTGTGCTCTATTCATCAGTTGTGTACCCTCACAACTATGGATTCEST: gi|33663512|gb|CF294479.1|CF294479
genomic: GGGGCAGCAAGGTTAAATATGAACTTGACAAGAAAACTGGACTGATAGTGgtaaaacaag ... acatgtaaagGTGGACCGTGTGCTCTATTCATCAGTTGTGTACCCTCACAACTATGGATTC
EST: GGGGCAGCAAGGTTAAATATGAACTTGACAAGAAAACTGGACTGATAGTG GTGGACCGTGTGCTCTATTCATCAGTTGTGTACCCTCACAACTATGGATTCEST: gi|699797|gb|D46088.1|D46088
genomic: GGGGCAGCAAGGTTAAATATGAACTTGACAAGAAAACTGGACTGATAGTGgtaaaacaag ... acatgtaaagGTGGACCGTGTGCTCTATTCATCAGTTGTGTACCCTCACAACTATGGATTC
EST: GGGGCAGCAAGGTTAAATATGAACTTGACAAGAAAACTGGACTGATAGTG GTGGACCGTGTGCTCTATTCATCAGTTGTGTACCCTCACAACTATGGATTCEST: gi|88400835|gb|CI616840.1|CI616840
genomic: GGGGCAGCAAGGTTAAATATGAACTTGACAAGAAAACTGGACTGATAGTGgtaaaacaag ... acatgtaaagGTGGACCGTGTGCTCTATTCATCAGTTGTGTACCCTCACAACTATGGATTC
EST: GGGGCAGCAAGGTTAAATATGAACTTGACAAGAAAACTGGACTGATAGTG GTGGACCGTGTGCTCTATTCATCAGTTGTGTACCCTCACAACTATGGAEST: gi|88425227|gb|CI564744.1|CI564744
genomic: GGGGCAGCAAGGTTAAATATGAACTTGACAAGAAAACTGGACTGATAGTGgtaaaacaag ... acatgtaaagGTGGACCGTGTGCTCTATTCATCAGTTGTGTACCCTCACAACTATGGA
EST: GGGGCAGCAAGGTTAAATATGAACTTGACAAGAAAACTGGACTGATAGTG GTGGACCGTGTGCTCTATTCATCAGCTTGTGTACCCTCACAACTATGGATTEST: gi|88300279|gb|CI584698.1|CI584698
genomic: GGGGCAGCAAGGTTAAATATGAACTTGACAAGAAAACTGGACTGATAGTGgtaaaacaag ... acatgtaaagGTGGACCGTGTGCTCTATTCATCAG-TTGTGTACCCTCACAACTATGGATT
EST: GGGGCAGCAAGGTTAAATATGAACTTGACAAGAAAACTGGACTGATAGTG GTGGACCGTGTGCTCTATTCATCAGTTGTGTACCCTCACAACTATGGATTCEST: gi|117243396|gb|CT843443.1|CT843443
genomic: GGGGCAGCAAGGTTAAATATGAACTTGACAAGAAAACTGGACTGATAGTGgtaaaacaag ... acatgtaaagGTGGACCGTGTGCTCTATTCATCAGTTGTGTACCCTCACAACTATGGATTC
EST: GGGGCAGCAAGGTTAAATATGAACTTGACAAGAAAACTGGACTGATAGTG GTGGACCGTGTGCTCTATTCATCAGTTGTGTACCCTCACAACTATGGATTCEST: gi|163918065|gb|EG713993.1|EG713993
genomic: GGGGCAGCAAGGTTAAATATGAACTTGACAAGAAAACTGGACTGATAGTGgtaaaacaag ... acatgtaaagGTGGACCGTGTGCTCTATTCATCAGTTGTGTACCCTCACAACTATGGATTC
EST: ATATGAACTTGACAAGAAAACTGGACTGATAGTG GTGGACCGTGTGCTCTATTCATCAGTTGTGTACCCTCACAACTATGGATTCEST: gi|3759881|gb|C97139.1|C97139
genomic: ATATGAACTTGACAAGAAAACTGGACTGATAGTGgtaaaacaag ... acatgtaaagGTGGACCGTGTGCTCTATTCATCAGTTGTGTACCCTCACAACTATGGATTC
EST: GGGGCAGCAAGGGTAAATATGAACTTGACAAGAAAACTGGACTGATAGTG GTGGACCGTGTGCTCTATTCATCAGTTGTGTACCCTCACAA-TATGGGAT-EST: gi|88578597|gb|CI687538.1|CI687538
genomic: GGGGCAGCAAGGTTAAATATGAACTTGACAAGAAAACTGGACTGATAGTGgtaaaacaag ... acatgtaaagGTGGACCGTGTGCTCTATTCATCAGTTGTGTACCCTCACAACTATGG-ATT
EST: GGGGCAGCAAGGTTAAATATGAACTTGACAAGAAAACTGGACTGATAGTG GTGGACCGTGTGCTCTATTCATCAGTTGTGTACCCTCACAANTATGEST: gi|88325992|gb|CI651039.1|CI651039
genomic: GGGGCAGCAAGGTTAAATATGAACTTGACAAGAAAACTGGACTGATAGTGgtaaaacaag ... acatgtaaagGTGGACCGTGTGCTCTATTCATCAGTTGTGTACCCTCACAACTATG
EST: GGGGCAGCAAGGTTAAATATGAACTTGACAAGAAAACTGGACTGATAGTG GTGGACCGTGTGCTCTATTCATCAGTTGTGTACC
genomic: GGGGCAGCAAGGTTAAATATGAACTTGACAAGAAAACTGGACTGATAGTGgtaaaacaag ... acatgtaaagGTGGACCGTGTGCTCTATTCATCAGTTGTGTACC
tttccagtgactctaaaatgttttgtacatcatttggttgtatgcacatgtaaagGTGGACCGTGTGCTCTATTCATCAGTTGTGTACCCTCACAACTATGGATTCATTCCTCGCACGCTGTGTGAAGACAGTGATCCGTTGGATGTGCTGGTTA
ctctaaa putative branch site (score: 63)
taaaatgttttgta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaaacaaggcgattcaattgattcatcattttttttagtgaaaccatatttttccagtgactctaaaatgttttgtacatcatttggttgtatgcacatgtaaagGTGGACCGTGTGCTCTATTCATCAGTTGTGTACCCTCACAACTATGGATTCATTCCTCGCACGCTGTGTGAAGACAGTGATCCGTTGGATGTGCTGGTTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA