Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagtgctttagcttgtcggtatgcgagtaaatgaatatcattttcaattttcttgtacataatcattgcaccatttggtgatgcagGATAATCTTGCACTGGTGTACCTGTCAAGCATCACAAGGACACAGATTAGCATAGCCGAGAAGTTGAACACCGCCGCCCAAATCCTGTAATTTCCATGTA

Basic information

species Oryza sativa
transcript LOC_Os05g01450.2
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os05g01450.1 (Oryza sativa), 3'ss of exon 5
lower sequence: GRMZM2G025214_T01 (Zea mays), 3'ss of exon 9
----gttagtgctttagct-tgtcggtatgcgagtaaatgaatatcattttcaattttcttgtacataatcattgcaccatttggtgatgcagGATAATCTTGCACTGGTGTACCTGTCAAGCATCACAAGGACACAGATTAGCATAGCCGAGAAGTTGAACACCGCCGCCCAAATCCTGTAATTTCCATGTA
     ||| |  |  | |  | | | |    | ||  |||  || | ||    ||  |||  |  ||||||| ||  ||           |||||||| ||||| ||||| |||||||||||||||||||||||||| || ||||| ||||||||||||||||| || || ||| | |||||  ||    |  
gtaaattacttgtgcaccccttttgatgccagtgtggatgg-taaccttgctgatgatctaattaataatcactgaccc---------cacagGATAACCTTGCGCTGGTATACCTGTCAAGCATCACAAGGACACAAATCAGCATCGCCGAGAAGTTGAACACTGCTGCTCAAGTGCTGTAGGTTTGGCGGT

upper sequence: LOC_Os05g01450.1 (Oryza sativa), 3'ss of exon 5
lower sequence: GRMZM2G025214_T03 (Zea mays), 3'ss of exon 10
---------gttagtgctttagcttgtcggt-atgcgagtaaatgaatatcattttcaatttt---cttgtacataatcattgcaccatttggtgat---gcagGATAATCTTGCACTGGTGTACCTGTCAAGCATCACAAGGACACAGATTAGCATAGCCGAGAAGTTGAACACCGCCGCCCAAATCCTGTAATTTCCATGTA
         |  |    |   |    |   |  |||       |  ||  || | |  ||  |   ||||   || |||     |  | |   |||     |||||||| ||||| ||||| |||||||||||||||||||||||||| || ||||| ||||||||||||||||| || || ||| | |||||  ||       
cttttcaatgacaagattcaggtaaattacttgtgcaccccttttgatgccagtgtggatggtaaccttgctgatgatctaattaataatcactgaccccACAGGATAACCTTGCGCTGGTATACCTGTCAAGCATCACAAGGACACAAATCAGCATCGCCGAGAAGTTGAACACTGCTGCTCAAGTGCTGTAGGTTTGG----

upper sequence: LOC_Os05g01450.1 (Oryza sativa), 3'ss of exon 5
lower sequence: GRMZM2G098153_T03 (Zea mays), 3'ss of exon 1
----gttagtgctttagcttgtcggtatgcgagtaaatgaatatcattttcaattttcttgtacataatcattgcaccatttggtgatgcagGATAATCTTGCACTGGTGTACCTGTCAAGCATCACAAGGACACAGATTAGCATAGCCGAGAAGTTGAACACCGCCGCCCAAATCCTGTAATTTCCAT-GTA
     ||| |  ||| |||  |    |||  |||  | ||    ||   |   ||||||||   ||     |  ||  |   |      |||||||| ||||| ||||| |||||||||||||||||||||||||| || ||||| ||||||||||||||||| || || ||    |||| | ||   | || 
gtaaattatttttttggctcttg---atggcagtgtaggatagccaccgtgctttttcttgctgatggat-taacaataaccgaccccacagGATAACCTTGCGCTGGTATACCTGTCAAGCATCACAAGGACACAAATCAGCATCGCCGAGAAGTTGAACACTGCTGCTCAGGCGCTGTGACTTTGGTTGT-

upper sequence: LOC_Os05g01450.1 (Oryza sativa), 3'ss of exon 5
lower sequence: Vv13s0019g03470.t01 (Vitis vinifera), 3'ss of exon 5
gttagtgctttagcttgtcggtatgcgag-taaatgaatatc----attttca-attttcttgtac----ataatcattgcaccatttggtgat--gcagGATAATCTTGCACTGGTGTACCTGTCAAGCATCACAAGGACACAGATTAGCATAGCCGAGAAGTTGAACACCGCCGCCCAAATCCTGTAATTTCCATGTA
  |  |||||  |    | | | ||   | | | |||| | |    |||| ||   ||| |   ||    | ||| |||      |   ||  |  | ||||  |  |    ||  ||||| ||||||||||||||||||||||| | ||| |||| || ||||||||||| || || ||||||| ||||     ||  |
tctgttgcttctgtccattgttgtgtttgatcattgaaaacccacaatttgcatggtttatctcaccgtaaaaatgattttcttttcctgttttttgtagGACCACTTACTCCTACTGTACTTGTCAAGCATCACAAGGACACAGCTGAGCTTAGCGGAAAAGTTGAACACAGCTGCTCAAATCCCGTAACCCATATCCA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58598359|gb|CK008887.1|CK008887
EST:     CAAAATTGTCACCAGCTGCTTTTGACAAGCTTTTCAATGACAGGATTCAG                         GATAATCTTGCACTGGTGTACCTGTCAAGCGTCACAAGGACACAGATTAGC
genomic: CAAAATTGTCACCAGCTGCTTTTGACAAGCTTTTCAATGACAGGATTCAGgttagtgctt ... ggtgatgcagGATAATCTTGCACTGGTGTACCTGTCAAGCATCACAAGGACACAGATTAGC
EST: gi|88472377|gb|CI409648.1|CI409648
EST:     CAAAATTGTCACCAGCTGCTTTTGACAAGCTTTTCAATGACAGGATTCAG                         GATAATCTTGCACTGGTGTACCTGTCAAGCATCACAAGGACACAGATTAGC
genomic: CAAAATTGTCACCAGCTGCTTTTGACAAGCTTTTCAATGACAGGATTCAGgttagtgctt ... ggtgatgcagGATAATCTTGCACTGGTGTACCTGTCAAGCATCACAAGGACACAGATTAGC
EST: gi|88958697|gb|CI381500.1|CI381500
EST:     CAAAATTGTCACCAGCTGCTCTTGACAAGCTTTTCAATGACAGGATTCAG                         GATAATCTTGCACTGGTGTACCTGTCAAGCATCACAAGGACACAGATTAGC
genomic: CAAAATTGTCACCAGCTGCTTTTGACAAGCTTTTCAATGACAGGATTCAGgttagtgctt ... ggtgatgcagGATAATCTTGCACTGGTGTACCTGTCAAGCATCACAAGGACACAGATTAGC
EST: gi|88475801|gb|CI413072.1|CI413072
EST:     CAAAATTGTCACCAGCTGCTTTTGACAAGCTTTTCAATGACAGGATTCAG                         GATAATCTTGCACTGGTGTACCTGTCAAGCATCACAAGGACACAGATTAGC
genomic: CAAAATTGTCACCAGCTGCTTTTGACAAGCTTTTCAATGACAGGATTCAGgttagtgctt ... ggtgatgcagGATAATCTTGCACTGGTGTACCTGTCAAGCATCACAAGGACACAGATTAGC
EST: gi|87013558|gb|CI267259.1|CI267259
EST:     CAAAATTGTCACCAGCTGCTTTTGACAAGCTTTTCAATGACAGGATTCAG                         GATAATCTTGCACTGGTGTACCTGTCAAGCATCACAAGGACACAGATTAGC
genomic: CAAAATTGTCACCAGCTGCTTTTGACAAGCTTTTCAATGACAGGATTCAGgttagtgctt ... ggtgatgcagGATAATCTTGCACTGGTGTACCTGTCAAGCATCACAAGGACACAGATTAGC
EST: gi|88843246|gb|CI372146.1|CI372146
EST:     CAAAATTGTCACCAGCTGCTTTTGACAAGCTTTTCAATGACAGGATTCAG                         GATAATCTTGCACTGGTGTACCTGTCAAGCATCACAAGGACACAGATTAGC
genomic: CAAAATTGTCACCAGCTGCTTTTGACAAGCTTTTCAATGACAGGATTCAGgttagtgctt ... ggtgatgcagGATAATCTTGCACTGGTGTACCTGTCAAGCATCACAAGGACACAGATTAGC
EST: gi|25807581|gb|CA763542.1|CA763542
EST:     CAAAATTGTCACCAGCTGCTTTTGACAAGCTTTTCAATGACAGGATTCAG                         GATAATCTTGCACTGGTGAACCTGTCAAGCATCACAAGGACACAGATTAGC
genomic: CAAAATTGTCACCAGCTGCTTTTGACAAGCTTTTCAATGACAGGATTCAGgttagtgctt ... ggtgatgcagGATAATCTTGCACTGGTGTACCTGTCAAGCATCACAAGGACACAGATTAGC
EST: gi|58595951|gb|CK006479.1|CK006479
EST:     CAAAATTGTCACCAGCTGCTTTTGACAAGCTTTTCAATGACAGGATTCAG                         GATAATCTTGCACTGGTGTACCTGTCAAGCGTCACAAGGACACAGATTAGC
genomic: CAAAATTGTCACCAGCTGCTTTTGACAAGCTTTTCAATGACAGGATTCAGgttagtgctt ... ggtgatgcagGATAATCTTGCACTGGTGTACCTGTCAAGCATCACAAGGACACAGATTAGC
EST: gi|88279070|gb|CI400070.1|CI400070
EST:     CAGAATTGTCACCAGCTGCTTTTGACAAGCTTTTCAATGACAGGATTCAG                         GATAATCTTGCACTGGTGTACCTGTCAAGCATCACAAGGACACAGATTAGC
genomic: CAAAATTGTCACCAGCTGCTTTTGACAAGCTTTTCAATGACAGGATTCAGgttagtgctt ... ggtgatgcagGATAATCTTGCACTGGTGTACCTGTCAAGCATCACAAGGACACAGATTAGC
EST: gi|2431154|gb|C73574.1|C73574
EST:     AAAATTGTCACCAGCTGCTTTTTGACAAGCTTTTCAATGACAGGATTCAG                         GATAATCTTGCA
genomic: AAAATTGTCACCAGCTGCTTTT-GACAAGCTTTTCAATGACAGGATTCAGgttagtgctt ... ggtgatgcagGATAATCTTGCA
EST: gi|88483829|gb|CI421100.1|CI421100
EST:     CAAAATTGTCACCAGCTGCTTTTGACAAGCTTTTCAATGACAGGATTCAG                         GATAATCTTGCACTGGTGTACCTGTCAAGCATCACAAGGACACAGATTAGC
genomic: CAAAATTGTCACCAGCTGCTTTTGACAAGCTTTTCAATGACAGGATTCAGgttagtgctt ... ggtgatgcagGATAATCTTGCACTGGTGTACCTGTCAAGCATCACAAGGACACAGATTAGC
EST: gi|88846943|gb|CI005922.1|CI005922
EST:     CAAAATTGTCACCAGCTGCTTTTGACAAGCTTTTCAATGACAGGATTCAG                         GATAATCTTGCACTGGTGTACCTGTCAAGCATCACAAGGACACAGATTAGC
genomic: CAAAATTGTCACCAGCTGCTTTTGACAAGCTTTTCAATGACAGGATTCAGgttagtgctt ... ggtgatgcagGATAATCTTGCACTGGTGTACCTGTCAAGCATCACAAGGACACAGATTAGC
EST: gi|3760827|gb|C98081.1|C98081
EST:     CAAAATTGTCACCAGCTGCTTTTGACAAGCTTTTCAATGACAGGATTCAG                         GATAATCTTGCACTGGTGTACCTGTCAAGCATCACAAGGACACAGATTAGC
genomic: CAAAATTGTCACCAGCTGCTTTTGACAAGCTTTTCAATGACAGGATTCAGgttagtgctt ... ggtgatgcagGATAATCTTGCACTGGTGTACCTGTCAAGCATCACAAGGACACAGATTAGC
EST: gi|88254568|gb|CI353392.1|CI353392
EST:     CAAAATTGTCACCAGCTGCTTTTGACAAGCTTTTCAATGACAGGATTCAG                         GATAATCTTGCACTGGTGTACCTGTCAAGCATCACAAGGACACAGATTAGC
genomic: CAAAATTGTCACCAGCTGCTTTTGACAAGCTTTTCAATGACAGGATTCAGgttagtgctt ... ggtgatgcagGATAATCTTGCACTGGTGTACCTGTCAAGCATCACAAGGACACAGATTAGC
EST: gi|88417790|gb|CI535949.1|CI535949
EST:     CAAAATTGTCACCAGCTGCTTTTGACAAGCTTTTCAATGACAGGATTCAG                         GATAATCTTGCACTGGTGTACCTGTCAAGCATCACAAGGACACAGATTAGC
genomic: CAAAATTGTCACCAGCTGCTTTTGACAAGCTTTTCAATGACAGGATTCAGgttagtgctt ... ggtgatgcagGATAATCTTGCACTGGTGTACCTGTCAAGCATCACAAGGACACAGATTAGC
EST: gi|88223674|gb|CI223523.1|CI223523
EST:     CAAAATTGTCACCAGCTGCTTTTGACAAGCTTTTCAATGACAGGATTCAG                         GATAATCTTGCACTGGTGTACCTGTCAAGCATCACAAGGACACAGATTAGC
genomic: CAAAATTGTCACCAGCTGCTTTTGACAAGCTTTTCAATGACAGGATTCAGgttagtgctt ... ggtgatgcagGATAATCTTGCACTGGTGTACCTGTCAAGCATCACAAGGACACAGATTAGC
EST: gi|86596215|gb|CI268515.1|CI268515
EST:     CAAAATTGTCACCAGCTGCTTTTGACAAGCTTTTCAATGACAGGATTCAG                         GATAATCTTGCACTGGTGTACCTGTCAAGCATCACAAGGACACAGATTAGC
genomic: CAAAATTGTCACCAGCTGCTTTTGACAAGCTTTTCAATGACAGGATTCAGgttagtgctt ... ggtgatgcagGATAATCTTGCACTGGTGTACCTGTCAAGCATCACAAGGACACAGATTAGC
EST: gi|88517976|gb|CI445529.1|CI445529
EST:     CAAAATTGTCACCAGCTGCTTTTGACAAGCTTTTCAATGACAGGATTCAG                         GATAATCTTNCACTGGTGTACCTGTCAAGCATCACAAGGACACAGATTAGC
genomic: CAAAATTGTCACCAGCTGCTTTTGACAAGCTTTTCAATGACAGGATTCAGgttagtgctt ... ggtgatgcagGATAATCTTGCACTGGTGTACCTGTCAAGCATCACAAGGACACAGATTAGC
EST: gi|88239784|gb|CI238946.1|CI238946
EST:     CAAAATTGTCACCAGCTGCTTTTGACAAGCTTTTCAATGACAGGATTCAG                         GATAATCTTGCACTGGTGTACCTGTCAAGCATCACAAGGACACAGATTAGC
genomic: CAAAATTGTCACCAGCTGCTTTTGACAAGCTTTTCAATGACAGGATTCAGgttagtgctt ... ggtgatgcagGATAATCTTGCACTGGTGTACCTGTCAAGCATCACAAGGACACAGATTAGC
EST: gi|33803402|gb|CF327575.1|CF327575
EST:     CAAAATTGTCACCAGCTGCTTTTGACAAGCTTTTCAATGACAGGATTCAG                         GATAATCTTGCACTGGTGTACCTGTCAAGCATCACAAGGACACAGATTAGC
genomic: CAAAATTGTCACCAGCTGCTTTTGACAAGCTTTTCAATGACAGGATTCAGgttagtgctt ... ggtgatgcagGATAATCTTGCACTGGTGTACCTGTCAAGCATCACAAGGACACAGATTAGC
EST: gi|88210483|gb|CI210332.1|CI210332
EST:     CAAAATTGTCACCAGCTGCTTTTGACAAGCTTTTCAATGACAGGATTCAG                         GATAATCTTGCACTGGTGTACCTGTCAAGCATCACAAGGACACAGATTAGC
genomic: CAAAATTGTCACCAGCTGCTTTTGACAAGCTTTTCAATGACAGGATTCAGgttagtgctt ... ggtgatgcagGATAATCTTGCACTGGTGTACCTGTCAAGCATCACAAGGACACAGATTAGC
EST: gi|86495486|gb|CI138119.1|CI138119
EST:     CAAAATTGTCACCAGCTGCTTTTGACAAGCTTTTCAATGACAGGATTCAG                         GATAATCTTGCACTGGTGTACCTGTCAAGCATCACAAGGACACAGATTAGC
genomic: CAAAATTGTCACCAGCTGCTTTTGACAAGCTTTTCAATGACAGGATTCAGgttagtgctt ... ggtgatgcagGATAATCTTGCACTGGTGTACCTGTCAAGCATCACAAGGACACAGATTAGC
EST: gi|88217851|gb|CI217700.1|CI217700
EST:     CAAAATTGTCACCAGCTGCTTTTGACAAGCTTTTCAATGACAGGATTCAG                         GATAATCTTGCACTGGTGTACCTGTCAAGCATCACAAGGACACAGATTAGC
genomic: CAAAATTGTCACCAGCTGCTTTTGACAAGCTTTTCAATGACAGGATTCAGgttagtgctt ... ggtgatgcagGATAATCTTGCACTGGTGTACCTGTCAAGCATCACAAGGACACAGATTAGC
EST: gi|88507869|gb|CI435375.1|CI435375
EST:     CAAAATTGTCACCAGCTGCTTTTGACAAGCTTTTCAATGACAGGATTCAG                         GATAATCTTGCACTGGTGTACCTGTCAAGCATCACAAGGACACAGATTAGC
genomic: CAAAATTGTCACCAGCTGCTTTTGACAAGCTTTTCAATGACAGGATTCAGgttagtgctt ... ggtgatgcagGATAATCTTGCACTGGTGTACCTGTCAAGCATCACAAGGACACAGATTAGC
EST: gi|88201915|gb|CI202270.1|CI202270
EST:     CAAAATTGTCACCAGCTGCTTTTGACAAGCTTTTCAATGACAGGATTCAG                         GATAATCTTGCACTGGTGTACCTGTCAAGCATCACAAGGACACAGATTAGC
genomic: CAAAATTGTCACCAGCTGCTTTTGACAAGCTTTTCAATGACAGGATTCAGgttagtgctt ... ggtgatgcagGATAATCTTGCACTGGTGTACCTGTCAAGCATCACAAGGACACAGATTAGC
EST: gi|88295641|gb|CI530204.1|CI530204
EST:     CAAAATTGTCACCAGCTGCTTTTGACAAGCTTTTCAATGACAGGATTCAG                         GATAATCTTGCACTGGTGTACCTGTCAAGCATCACAAGGACACAGATTAGC
genomic: CAAAATTGTCACCAGCTGCTTTTGACAAGCTTTTCAATGACAGGATTCAGgttagtgctt ... ggtgatgcagGATAATCTTGCACTGGTGTACCTGTCAAGCATCACAAGGACACAGATTAGC
EST: gi|218486117|gb|FG963040.1|FG963040
EST:     CAAAATTGTCACCAGCTGCTTTTGACAAGCTTTTCAATGACAGGATTCAG                         GATAATCTTGCACTGGTGTACCTGTCAAGCGTCACAAGGACACAGATTAGC
genomic: CAAAATTGTCACCAGCTGCTTTTGACAAGCTTTTCAATGACAGGATTCAGgttagtgctt ... ggtgatgcagGATAATCTTGCACTGGTGTACCTGTCAAGCATCACAAGGACACAGATTAGC
EST: gi|86845759|gb|CI347044.1|CI347044
EST:     CAAAATTGTCACCAGCTGCTTTTGACAAGCTTTTCAATGACAGGATTCAG                         GATAATCTTGCACTGGTGTACCTGTCAAGCATCACAAGGACACAGATTAGC
genomic: CAAAATTGTCACCAGCTGCTTTTGACAAGCTTTTCAATGACAGGATTCAGgttagtgctt ... ggtgatgcagGATAATCTTGCACTGGTGTACCTGTCAAGCATCACAAGGACACAGATTAGC
EST: gi|88996578|gb|CI389244.1|CI389244
EST:     CCAAATTGTCACCAGCTGCTTTTGACAAGCTTTTCAATGACAGGATTCAG                         GATAATCTTGCACTGGTGTACCTGTCCAGCATCACAAGGACACAGATTAGC
genomic: CAAAATTGTCACCAGCTGCTTTTGACAAGCTTTTCAATGACAGGATTCAGgttagtgctt ... ggtgatgcagGATAATCTTGCACTGGTGTACCTGTCAAGCATCACAAGGACACAGATTAGC
EST: gi|88985008|gb|CI011864.1|CI011864
EST:     CAAAATTGTCACCAGCTGCTTTTGACAAGCTTTTCAATGACAGGATTCAG                         GATAATCTTGCACTGGTGTACCTGTCAAGCATCACAAGGACACAGATTAGC
genomic: CAAAATTGTCACCAGCTGCTTTTGACAAGCTTTTCAATGACAGGATTCAGgttagtgctt ... ggtgatgcagGATAATCTTGCACTGGTGTACCTGTCAAGCATCACAAGGACACAGATTAGC
EST: gi|33689596|gb|CF317835.1|CF317835
EST:     CAAAATTGTCACCAGCTGCTTTTGACAAGCTTTTCAATGACAGGATTCAG                         GATAATCTTGCACTGGTGTACCTGTCAAGCATCACAAGGACACAGATTAGC
genomic: CAAAATTGTCACCAGCTGCTTTTGACAAGCTTTTCAATGACAGGATTCAGgttagtgctt ... ggtgatgcagGATAATCTTGCACTGGTGTACCTGTCAAGCATCACAAGGACACAGATTAGC
EST: gi|88213076|gb|CI212740.1|CI212740
EST:     CAAAATTGTCACCAGCTGCTTTTGACAAGCTTTTCAATGACAGGATTCAG                         GATAATCTTGCACTGGTGTACCTGTCAAGCATCACAAGGACACAGATTAGC
genomic: CAAAATTGTCACCAGCTGCTTTTGACAAGCTTTTCAATGACAGGATTCAGgttagtgctt ... ggtgatgcagGATAATCTTGCACTGGTGTACCTGTCAAGCATCACAAGGACACAGATTAGC
EST: gi|88262599|gb|CI366373.1|CI366373
EST:     CAAAATTGTCGCCAGCTGCTTTTGACAAGCTTTTCAATGACAGGATTCAG                         GATAATCTTGCACTGGTGTACCTGTCAAGCATCACAAGGACACAGATTAGC
genomic: CAAAATTGTCACCAGCTGCTTTTGACAAGCTTTTCAATGACAGGATTCAGgttagtgctt ... ggtgatgcagGATAATCTTGCACTGGTGTACCTGTCAAGCATCACAAGGACACAGATTAGC
EST: gi|88458985|gb|CI555666.1|CI555666
EST:     CAAAATTGTCACCAGCTGCTTGTGACAAGCTTTTCAATGACAGGATTCAG                         GATAATCTTGCAGTGGTTTACCTGTCAAGCATCACAAGGACACAGATTAGC
genomic: CAAAATTGTCACCAGCTGCTTTTGACAAGCTTTTCAATGACAGGATTCAGgttagtgctt ... ggtgatgcagGATAATCTTGCACTGGTGTACCTGTCAAGCATCACAAGGACACAGATTAGC
EST: gi|86259276|gb|CI007953.1|CI007953
EST:     CAAAATTGTCACCAGCTGCTTTTGACAAGCTTTTCAATGACAGGATTCAG                         GATAATCTTGCACTGGTGTACCTGTCAAGCATCACAAGGACACAGATTAGC
genomic: CAAAATTGTCACCAGCTGCTTTTGACAAGCTTTTCAATGACAGGATTCAGgttagtgctt ... ggtgatgcagGATAATCTTGCACTGGTGTACCTGTCAAGCATCACAAGGACACAGATTAGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgaatatcattttcaattttcttgtacataatcattgcaccatttggtgatgcagGATAATCTTGCACTGGTGTACCTGTCAAGCATCACAAGGACACAGATTAGCATAGCCGAGAAGTTGAACACCGCCGCCCAAATCCTGTAATTTCCATGTA
     atcattttcaatttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gttagtgctttagcttgtcggtatgcgagtaaatgaatatcattttcaattttcttgtacataatcattgcaccatttggtgatgcagGATAATCTTGCACTGGTGTACCTGTCAAGCATCACAAGGACACAGATTAGCATAGCCGAGAAGTTGAACACCGCCGCCCAAATCCTGTAATTTCCATGTA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT