Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gcaaccatttggcctatgctttgttcttttcatatattctgctcgatcatttcttagaactgatcattgcgctgcagGTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCTCCTATGAATGCAATCGGATGCGCGATCACGCTCGTTGGCTGTACTTTTT

Basic information

species Oryza sativa
transcript LOC_Os04g59550.2
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os04g59550.2 (Oryza sativa), 3'ss of exon 4
lower sequence: GRMZM2G127591_T03 (Zea mays), 3'ss of exon 5
gcaaccatttggcctatgctttgttcttttcatatattctgctcgatcatttcttagaactgatcattgcgctgcagGTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCTCCTATGAATGCAATCGGATGCGCGATCACGCTCGTTGGCTGTACTTTTT
       |  |  |  | |  |  ||  | |     | |||||||| ||||  ||   |  |    ||    || |||| || || || || || ||||| |||| |||||||||||| || |||||| | |||||||||||||| || |  ||||| || ||||| || ||||| |
------gtaagatccctaccctactccctccgc---tgctgctcga-cattgattgacatagcatcttaaaatgtagGTCGCGGTGGCAGTGTTAGTGTCGTGGTCGATCTTCCGGAATCCAATCTCTGCAATGAATGCAATCGGGTGTGGAATCACCCTGGTTGGTTGCACTTTCT

upper sequence: LOC_Os04g59550.2 (Oryza sativa), 3'ss of exon 4
lower sequence: AT1G77610.1 (Arabidopsis thaliana), 3'ss of exon 4
-------------------gcaaccatttggcctatgctttgttcttttcatatattctgc-tcgatcatt---tcttagaactgatcattgcgctgcagGTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCTCCTATGAATGCAATCGGATGCGCGATCACGCTCGTTGGCTGTACTTTTT
                   || |   |||     ||       |  |    | | |  ||| | |  || |   ||| |    ||     ||   |||||||||| || |||||| |||| ||||||||||| ||||| ||||| || ||   |||||||||  | |||||||  || ||||| || ||||| || ||||
caaattttcgaggcacattgctatggtttttgtcatcaccaacttgtgatttgtttgttgccttggacactcactctcatgtttgtaatatgatttgcagGTTGCAGTGGCTGTAATGGTCTCATGGTTGATATTCCGTAACCCAATATCATATATGAATGCTGTTGGATGCGGAATTACGCTTGTGGGCTGCACGTTTT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|66922471|gb|CX109319.1|CX109319
EST:     TCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAAGT-                         -T-GCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
genomic: TCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAAGTAgcaaccattt ... tgcgctgcagGTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
EST: gi|88247068|gb|CI246917.1|CI246917
EST:     TCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTG-AA--A                         GTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
genomic: TCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAAGTAgcaaccattt ... tgcgctgcagGTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
EST: gi|88847767|gb|CI018458.1|CI018458
EST:     TCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTG-AA--A                         GTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
genomic: TCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAAGTAgcaaccattt ... tgcgctgcagGTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
EST: gi|33688357|gb|CF316596.1|CF316596
EST:     TCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTG-AA--A                         GTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
genomic: TCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAAGTAgcaaccattt ... tgcgctgcagGTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
EST: gi|88833625|gb|CI077106.1|CI077106
EST:     ATGTTGCTGGCAACCTG-AA--A                         GTTGCTGTTGCTGTATGGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
genomic: ATGTTGCTGGCAACCTGAAAGTAgcaaccattt ... tgcgctgcagGTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
EST: gi|87026811|gb|CI259464.1|CI259464
EST:     TCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTG-AA--A                         GTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
genomic: TCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAAGTAgcaaccattt ... tgcgctgcagGTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
EST: gi|86503733|gb|CI146366.1|CI146366
EST:     TCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTG-AA--A                         GTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCCGGAACCCTATCTC
genomic: TCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAAGTAgcaaccattt ... tgcgctgcagGTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTT-CCGGAACCCTATCTC
EST: gi|86255766|gb|CI066829.1|CI066829
EST:     TCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTG-AA--A                         GTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
genomic: TCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAAGTAgcaaccattt ... tgcgctgcagGTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
EST: gi|88218577|gb|CI218426.1|CI218426
EST:     TCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTG-AA--A                         GTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
genomic: TCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAAGTAgcaaccattt ... tgcgctgcagGTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
EST: gi|29616654|gb|CB621666.1|CB621666
EST:     TCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAAGT-                         -T-GCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
genomic: TCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAAGTAgcaaccattt ... tgcgctgcagGTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
EST: gi|86874424|gb|CI316790.1|CI316790
EST:     ACCTTCAATGTTGCT-GCAACCTG-AA--A                         G-TGCTGTTGCTGTATTGGTGTCAT-GTTGATCTTCC-GAACCCTATCTCT
genomic: ACCTTCAATGTTGCTGGCAACCTGAAAGTAgcaaccattt ... tgcgctgcagGTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
EST: gi|218492784|gb|FG960986.1|FG960986
EST:     TCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAAGT-                         -T-GCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
genomic: TCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAAGTAgcaaccattt ... tgcgctgcagGTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
EST: gi|218497812|gb|FG965091.1|FG965091
EST:     TCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAAGT-                         -T-GCTGTTGCTGTATGGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
genomic: TCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAAGTAgcaaccattt ... tgcgctgcagGTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
EST: gi|86500550|gb|CI143183.1|CI143183
EST:     TCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTG-AA--A                         GTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
genomic: TCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAAGTAgcaaccattt ... tgcgctgcagGTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
EST: gi|38476272|gb|CF960405.1|CF960405
EST:     TCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAAGT-                         -T-GCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
genomic: TCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAAGTAgcaaccattt ... tgcgctgcagGTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
EST: gi|87024709|gb|CI259424.1|CI259424
EST:     TCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAAGT-                         -T-GCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
genomic: TCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAAGTAgcaaccattt ... tgcgctgcagGTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
EST: gi|88848848|gb|CI087370.1|CI087370
EST:     TCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTG-AA--A                         GTTGCTGTTGCTGTATNGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
genomic: TCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAAGTAgcaaccattt ... tgcgctgcagGTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
EST: gi|88516692|gb|CI444346.1|CI444346
EST:     TCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTG-AA--A                         GTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
genomic: TCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAAGTAgcaaccattt ... tgcgctgcagGTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
EST: gi|88218401|gb|CI218250.1|CI218250
EST:     TCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTG-AA--A                         GTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
genomic: TCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAAGTAgcaaccattt ... tgcgctgcagGTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
EST: gi|88996515|gb|CI260019.1|CI260019
EST:     TCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTG-AA--A                         GTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
genomic: TCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAAGTAgcaaccattt ... tgcgctgcagGTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
EST: gi|86413586|gb|CI019171.1|CI019171
EST:     TCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTG-AA--A                         GTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
genomic: TCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAAGTAgcaaccattt ... tgcgctgcagGTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
EST: gi|89180075|gb|CI044354.1|CI044354
EST:     TCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTG-AA--A                         GTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
genomic: TCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAAGTAgcaaccattt ... tgcgctgcagGTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
EST: gi|86412562|gb|CI066967.1|CI066967
EST:     TCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTG-AA--A                         GTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
genomic: TCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAAGTAgcaaccattt ... tgcgctgcagGTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
EST: gi|58608598|gb|CK036631.1|CK036631
EST:     TCCATGCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTG-AA--A                         GTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
genomic: TCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAAGTAgcaaccattt ... tgcgctgcagGTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
EST: gi|86593965|gb|CI260194.1|CI260194
EST:     TCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTG-AA--A                         GTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
genomic: TCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAAGTAgcaaccattt ... tgcgctgcagGTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
EST: gi|88975965|gb|CI024216.1|CI024216
EST:     TCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTG-AA--A                         GTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
genomic: TCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAAGTAgcaaccattt ... tgcgctgcagGTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
EST: gi|88455420|gb|CI519441.1|CI519441
EST:     TCCATTCAACCACTGCAGTGACCTTCAATGTTGGTGGCAACCTG-AA--A                         GTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
genomic: TCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAAGTAgcaaccattt ... tgcgctgcagGTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
EST: gi|88513990|gb|CI441496.1|CI441496
EST:     TCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTG-AA--A                         GTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
genomic: TCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAAGTAgcaaccattt ... tgcgctgcagGTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
EST: gi|88837594|gb|CI078954.1|CI078954
EST:     TCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTG-AA--A                         GTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
genomic: TCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAAGTAgcaaccattt ... tgcgctgcagGTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
EST: gi|88834668|gb|CI077951.1|CI077951
EST:     GCAGTGACCTTCAATGTTGCTGGCAACCTG-AA--A                         GTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTTT
genomic: GCAGTGACCTTCAATGTTGCTGGCAACCTGAAAGTAgcaaccattt ... tgcgctgcagGTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
EST: gi|86413489|gb|CI067894.1|CI067894
EST:     TCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTG-AA--A                         GTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
genomic: TCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAAGTAgcaaccattt ... tgcgctgcagGTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
EST: gi|88983032|gb|CI250636.1|CI250636
EST:     TCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTG-AA--A                         GTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
genomic: TCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAAGTAgcaaccattt ... tgcgctgcagGTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
EST: gi|86535753|gb|CI175959.1|CI175959
EST:     TCCATGCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTG-AA--A                         GTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
genomic: TCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAAGTAgcaaccattt ... tgcgctgcagGTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
EST: gi|88481468|gb|CI418739.1|CI418739
EST:     TGGCAACCTG-AA--A                         GTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
genomic: TGGCAACCTGAAAGTAgcaaccattt ... tgcgctgcagGTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
EST: gi|88829015|gb|CI073885.1|CI073885
EST:     AATGTTGCTGGCAACCTG-AA--A                         GTTGCTGTTGCTGTATGGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
genomic: AATGTTGCTGGCAACCTGAAAGTAgcaaccattt ... tgcgctgcagGTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
EST: gi|88829067|gb|CI073937.1|CI073937
EST:     CTGGCAACCTG-AA--A                         GTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
genomic: CTGGCAACCTGAAAGTAgcaaccattt ... tgcgctgcagGTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
EST: gi|86603288|gb|CI112048.1|CI112048
EST:     ATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTG-AA--A                         GTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
genomic: ATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAAGTAgcaaccattt ... tgcgctgcagGTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
EST: gi|84117662|gb|CD151429.1|CD151429
EST:     TCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAAGT-                         -T-GCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
genomic: TCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAAGTAgcaaccattt ... tgcgctgcagGTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
EST: gi|86418912|gb|CI053713.1|CI053713
EST:     TCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTG-AA--A                         GTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
genomic: TCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAAGTAgcaaccattt ... tgcgctgcagGTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
EST: gi|88992423|gb|CI035561.1|CI035561
EST:     CTTCAATGTTGCTGGCAACCTG-AA--A                         GTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
genomic: CTTCAATGTTGCTGGCAACCTGAAAGTAgcaaccattt ... tgcgctgcagGTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
EST: gi|87008234|gb|CI299202.1|CI299202
EST:     TCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTG-AA--A                         GTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
genomic: TCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAAGTAgcaaccattt ... tgcgctgcagGTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
EST: gi|33690588|gb|CF318827.1|CF318827
EST:     TCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTG-AA--A                         GTTGCTGTTGCTGTATTGGTGACATGGTTGATCTTCCGGAACCCTATCTCT
genomic: TCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAAGTAgcaaccattt ... tgcgctgcagGTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
EST: gi|88289762|gb|CI525094.1|CI525094
EST:     TCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTG-AA--A                         GTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
genomic: TCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAAGTAgcaaccattt ... tgcgctgcagGTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
EST: gi|86428727|gb|CI075408.1|CI075408
EST:     TCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAAGT-                         G--GCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
genomic: TCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAAGTAgcaaccattt ... tgcgctgcagGTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
EST: gi|88835713|gb|CI370818.1|CI370818
EST:     TCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTG-AA--A                         GTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
genomic: TCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAAGTAgcaaccattt ... tgcgctgcagGTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
EST: gi|88217499|gb|CI217348.1|CI217348
EST:     TCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTG-AA--A                         GTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
genomic: TCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAAGTAgcaaccattt ... tgcgctgcagGTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
EST: gi|88264374|gb|CI368148.1|CI368148
EST:     TCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTG-AA--A                         GTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
genomic: TCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAAGTAgcaaccattt ... tgcgctgcagGTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
EST: gi|89173863|gb|CI041756.1|CI041756
EST:     GCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTG-AA--A                         GTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
genomic: TCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAAGTAgcaaccattt ... tgcgctgcagGTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
EST: gi|86522157|gb|CI162363.1|CI162363
EST:     TCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAAGTA                         GTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
genomic: TCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAAGTAgcaaccattt ... tgcgctgcagGTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
EST: gi|88992389|gb|CI035527.1|CI035527
EST:     TCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTG-AA--A                         GTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
genomic: TCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAAGTAgcaaccattt ... tgcgctgcagGTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
EST: gi|88452271|gb|CI555348.1|CI555348
EST:     TCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTG-AA--A                         GTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
genomic: TCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAAGTAgcaaccattt ... tgcgctgcagGTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
EST: gi|88997115|gb|CI389781.1|CI389781
EST:     TCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTG-AA--A                         GTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
genomic: TCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAAGTAgcaaccattt ... tgcgctgcagGTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
EST: gi|218485011|gb|FG955777.1|FG955777
EST:     TCCATTCAACCACTGCAGTGACCTTCAGTGTTGCTGGCAACCTGAAAGT-                         -T-GCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
genomic: TCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAAGTAgcaaccattt ... tgcgctgcagGTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
EST: gi|87015255|gb|CI275445.1|CI275445
EST:     TCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTG-AA--A                         GTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
genomic: TCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAAGTAgcaaccattt ... tgcgctgcagGTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
EST: gi|29660579|gb|CB656854.1|CB656854
EST:     CCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAANA--A                         GT-GCTGTTGCTGTATTGGTGTCATGGTTGATCTT
genomic: CCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAA-AGTAgcaaccattt ... tgcgctgcagGTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTT
EST: gi|29660580|gb|CB656855.1|CB656855
EST:     TCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTG-AA--A                         GTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
genomic: TCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAAGTAgcaaccattt ... tgcgctgcagGTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
EST: gi|88907523|gb|CI090317.1|CI090317
EST:     TCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTG-AA--A                         GTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
genomic: TCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAAGTAgcaaccattt ... tgcgctgcagGTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
EST: gi|86496461|gb|CI139094.1|CI139094
EST:     TCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTG-AA--A                         GTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
genomic: TCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAAGTAgcaaccattt ... tgcgctgcagGTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttcttttcatatattctgctcgatcatttcttagaactgatcattgcgctgcagGTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCTCCTATGAATGCAATCGGATGCGCGATCACGCTCGTTGGCTGTACTTTTT
                                   aactgat  putative branch site (score: 3)
     tttcatatatt  TA-rich tract